HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-FEB-06 2DEV TITLE CRYSTAL STRUCTURE OF TT0972 PROTEIN FROM THERMUS THERMOPHILUS WITH TITLE 2 CS(+) IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TT0972 PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS DODECAMER, FLAVIN, CESIUM ION, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR E.INAGAKI,N.NAKANO,A.SHINKAI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2DEV 1 REMARK LINK REVDAT 3 13-JUL-11 2DEV 1 VERSN REVDAT 2 24-FEB-09 2DEV 1 VERSN REVDAT 1 01-MAY-07 2DEV 0 JRNL AUTH E.INAGAKI,N.NAKANO,A.SHINKAI,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF TT0972 PROTEIN FROM THERMUS JRNL TITL 2 THERMOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 133174.020 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 16631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 805 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2365 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 118 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.88000 REMARK 3 B22 (A**2) : 2.88000 REMARK 3 B33 (A**2) : -5.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM SIGMAA (A) : 0.47 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.670 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 35.86 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DEV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000025334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BSS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17151 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2DEH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG 4000, 60MM SODIUM ACETATE, 60MM REMARK 280 LITHIUM CHLORIDE, 100MM CESIUM CHLORIDE, 0.5MM NICKEL CHLORIDE, REMARK 280 30MM TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.14250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.88200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.88200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.07125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.88200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.88200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.21375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.88200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.88200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.07125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.88200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.88200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.21375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.14250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DODECAMER GENERATED FROM THE REMARK 300 TWO TRIMERS IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -X, -Y, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 102.14250 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 102.14250 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 102.14250 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 THR C 69 REMARK 465 MET D 1 REMARK 465 THR D 69 REMARK 465 MET E 1 REMARK 465 THR E 69 REMARK 465 MET F 1 REMARK 465 THR F 69 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 14 144.70 -172.04 REMARK 500 GLU A 68 -74.19 -39.21 REMARK 500 SER B 14 145.41 -174.83 REMARK 500 SER C 14 145.09 -179.41 REMARK 500 HIS C 35 44.23 72.50 REMARK 500 ARG C 45 -158.44 -142.51 REMARK 500 SER D 14 148.41 -176.07 REMARK 500 HIS D 35 38.50 71.31 REMARK 500 SER F 14 147.94 -170.78 REMARK 500 HIS F 35 37.49 70.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A1003 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE1 REMARK 620 2 GLU A 19 OE2 45.3 REMARK 620 3 GLU B 19 OE1 100.7 127.1 REMARK 620 4 GLU B 19 OE2 59.8 100.1 44.1 REMARK 620 5 GLU C 19 OE2 117.6 98.7 57.3 92.5 REMARK 620 6 GLU C 19 OE1 100.3 60.6 102.0 122.3 46.3 REMARK 620 7 GLU D 68 OE2 101.9 116.3 108.9 100.3 139.5 137.4 REMARK 620 8 GLU D 68 OE1 136.2 116.6 114.8 136.6 103.3 96.7 43.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 19 OE1 REMARK 620 2 GLU E 19 OE1 121.4 REMARK 620 3 GLU E 19 OE2 84.3 46.0 REMARK 620 4 GLU F 19 OE1 107.5 113.8 158.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CZ8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH PHOSPHATE IONS, POTASSIUM IONS AND REMARK 900 FLAVIN COMPAUNDS. REMARK 900 RELATED ID: 2DEG RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH MANGANESE IONS. REMARK 900 RELATED ID: 2DEH RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH CHROLIDE IONS. REMARK 900 RELATED ID: TTK003000972.4 RELATED DB: TARGETDB DBREF 2DEV A 1 69 GB 55772813 BAD71254 1 69 DBREF 2DEV B 1 69 GB 55772813 BAD71254 1 69 DBREF 2DEV C 1 69 GB 55772813 BAD71254 1 69 DBREF 2DEV D 1 69 GB 55772813 BAD71254 1 69 DBREF 2DEV E 1 69 GB 55772813 BAD71254 1 69 DBREF 2DEV F 1 69 GB 55772813 BAD71254 1 69 SEQRES 1 A 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 A 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 A 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 A 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 A 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 A 69 LEU GLU GLU THR SEQRES 1 B 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 B 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 B 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 B 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 B 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 B 69 LEU GLU GLU THR SEQRES 1 C 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 C 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 C 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 C 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 C 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 C 69 LEU GLU GLU THR SEQRES 1 D 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 D 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 D 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 D 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 D 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 D 69 LEU GLU GLU THR SEQRES 1 E 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 E 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 E 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 E 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 E 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 E 69 LEU GLU GLU THR SEQRES 1 F 69 MET GLY LYS VAL TYR LYS LYS VAL GLU LEU VAL GLY THR SEQRES 2 F 69 SER GLU GLU GLY LEU GLU ALA ALA ILE GLN ALA ALA LEU SEQRES 3 F 69 ALA ARG ALA ARG LYS THR LEU ARG HIS LEU ASP TRP PHE SEQRES 4 F 69 GLU VAL LYS GLU ILE ARG GLY THR ILE GLY GLU ALA GLY SEQRES 5 F 69 VAL LYS GLU TYR GLN VAL VAL LEU GLU VAL GLY PHE ARG SEQRES 6 F 69 LEU GLU GLU THR HET CL A1001 1 HET CS A1003 1 HET CL B1002 1 HET NA D1004 1 HETNAM CL CHLORIDE ION HETNAM CS CESIUM ION HETNAM NA SODIUM ION FORMUL 7 CL 2(CL 1-) FORMUL 8 CS CS 1+ FORMUL 10 NA NA 1+ FORMUL 11 HOH *46(H2 O) HELIX 1 1 GLY A 17 LEU A 33 1 17 HELIX 2 2 GLY B 17 LEU B 33 1 17 HELIX 3 3 GLY C 17 LEU C 33 1 17 HELIX 4 4 GLY D 17 LEU D 33 1 17 HELIX 5 5 GLY E 17 LYS E 31 1 15 HELIX 6 6 GLY F 17 LYS F 31 1 15 SHEET 1 A18 LEU A 36 GLY A 49 0 SHEET 2 A18 GLY A 52 ARG A 65 -1 O GLY A 52 N GLY A 49 SHEET 3 A18 TYR A 5 SER A 14 -1 N SER A 14 O TYR A 56 SHEET 4 A18 VAL F 4 SER F 14 -1 O TYR F 5 N VAL A 11 SHEET 5 A18 GLY F 52 ARG F 65 -1 O TYR F 56 N SER F 14 SHEET 6 A18 LEU F 36 GLY F 49 -1 N GLY F 49 O GLY F 52 SHEET 7 A18 LEU E 36 GLY E 49 -1 N ILE E 48 O ASP F 37 SHEET 8 A18 GLY E 52 ARG E 65 -1 O GLY E 52 N GLY E 49 SHEET 9 A18 TYR E 5 SER E 14 -1 N SER E 14 O TYR E 56 SHEET 10 A18 VAL B 4 SER B 14 -1 N LYS B 7 O GLU E 9 SHEET 11 A18 GLY B 52 ARG B 65 -1 O TYR B 56 N SER B 14 SHEET 12 A18 LEU B 36 GLY B 49 -1 N GLY B 49 O GLY B 52 SHEET 13 A18 LEU C 36 GLY C 49 -1 O ASP C 37 N ILE B 48 SHEET 14 A18 LEU A 36 GLY A 49 -1 N VAL A 41 O ILE C 44 SHEET 15 A18 LEU B 36 GLY B 49 -1 O VAL B 41 N ILE A 44 SHEET 16 A18 LEU C 36 GLY C 49 -1 O ASP C 37 N ILE B 48 SHEET 17 A18 GLY C 52 ARG C 65 -1 O GLY C 52 N GLY C 49 SHEET 18 A18 TYR C 5 SER C 14 -1 N SER C 14 O TYR C 56 SHEET 1 B 6 LEU A 36 GLY A 49 0 SHEET 2 B 6 GLY A 52 ARG A 65 -1 O GLY A 52 N GLY A 49 SHEET 3 B 6 TYR A 5 SER A 14 -1 N SER A 14 O TYR A 56 SHEET 4 B 6 VAL F 4 SER F 14 -1 O TYR F 5 N VAL A 11 SHEET 5 B 6 GLY F 52 ARG F 65 -1 O TYR F 56 N SER F 14 SHEET 6 B 6 LEU D 36 GLY D 49 0 SHEET 1 C15 TYR D 5 SER D 14 0 SHEET 2 C15 GLY D 52 ARG D 65 -1 O TYR D 56 N SER D 14 SHEET 3 C15 LEU D 36 GLY D 49 -1 N GLY D 49 O GLY D 52 SHEET 4 C15 LEU E 36 GLY E 49 -1 O VAL E 41 N ILE D 44 SHEET 5 C15 GLY E 52 ARG E 65 -1 O GLY E 52 N GLY E 49 SHEET 6 C15 TYR E 5 SER E 14 -1 N SER E 14 O TYR E 56 SHEET 7 C15 VAL B 4 SER B 14 -1 N LYS B 7 O GLU E 9 SHEET 8 C15 GLY B 52 ARG B 65 -1 O TYR B 56 N SER B 14 SHEET 9 C15 LEU B 36 GLY B 49 -1 N GLY B 49 O GLY B 52 SHEET 10 C15 LEU C 36 GLY C 49 -1 O ASP C 37 N ILE B 48 SHEET 11 C15 LEU A 36 GLY A 49 -1 N VAL A 41 O ILE C 44 SHEET 12 C15 LEU B 36 GLY B 49 -1 O VAL B 41 N ILE A 44 SHEET 13 C15 LEU C 36 GLY C 49 -1 O ASP C 37 N ILE B 48 SHEET 14 C15 GLY C 52 ARG C 65 -1 O GLY C 52 N GLY C 49 SHEET 15 C15 TYR C 5 SER C 14 -1 N SER C 14 O TYR C 56 LINK OE1 GLU A 19 CS CS A1003 1555 1555 2.93 LINK OE2 GLU A 19 CS CS A1003 1555 1555 2.76 LINK CS CS A1003 OE1 GLU B 19 1555 1555 2.97 LINK CS CS A1003 OE2 GLU B 19 1555 1555 2.74 LINK CS CS A1003 OE2 GLU C 19 1555 1555 2.78 LINK CS CS A1003 OE1 GLU C 19 1555 1555 2.82 LINK CS CS A1003 OE2 GLU D 68 1555 1655 3.02 LINK CS CS A1003 OE1 GLU D 68 1555 1655 2.88 LINK OE1 GLU D 19 NA NA D1004 1555 1555 2.77 LINK NA NA D1004 OE1 GLU E 19 1555 1555 2.74 LINK NA NA D1004 OE2 GLU E 19 1555 1555 2.90 LINK NA NA D1004 OE1 GLU F 19 1555 1555 2.89 SITE 1 AC1 3 LYS A 6 LYS D 6 LYS F 6 SITE 1 AC2 3 LYS B 6 LYS C 6 LYS E 6 SITE 1 AC3 4 GLU A 19 GLU B 19 GLU C 19 GLU D 68 SITE 1 AC4 3 GLU D 19 GLU E 19 GLU F 19 CRYST1 65.764 65.764 204.285 90.00 90.00 90.00 P 41 21 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004895 0.00000