HEADER TRANSCRIPTION 06-MAR-06 2DFY TITLE CRYSTAL STRUCTURE OF A CYCLIZED PROTEIN FUSION OF LMO4 LIM DOMAINS 1 TITLE 2 AND 2 WITH THE LIM INTERACTING DOMAIN OF LDB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN OF LIM DOMAIN TRANSCRIPTION FACTOR LMO4 AND COMPND 3 LIM DOMAIN-BINDING PROTEIN 1; COMPND 4 CHAIN: X, C; COMPND 5 FRAGMENT: LMO4; COMPND 6 SYNONYM: CZ-FLINC4; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CYCLISED FUSION OF LMO4 RESIDUES 18-152 TO LDB1 LID COMPND 10 RESIDUES 300-339 VIA TWO FLEXIBLE LINKERS WITH SEQUENCE GGSGGSGGSGG COMPND 11 AND TRESGSIEF SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RECA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNW1120, PCY76 KEYWDS ZINC FINGER, LIM ONLY PROTEIN, LIM DOMAIN, CIRCULAR PROTEIN, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.M.J.JEFFRIES,S.C.GRAHAM,C.A.COLLYER,J.M.GUSS,J.M.MATTHEWS REVDAT 7 25-OCT-23 2DFY 1 REMARK REVDAT 6 10-NOV-21 2DFY 1 REMARK SEQADV LINK REVDAT 5 23-AUG-17 2DFY 1 SOURCE REVDAT 4 13-JUL-11 2DFY 1 VERSN REVDAT 3 24-FEB-09 2DFY 1 VERSN REVDAT 2 21-NOV-06 2DFY 1 JRNL REVDAT 1 31-OCT-06 2DFY 0 JRNL AUTH C.M.J.JEFFRIES,S.C.GRAHAM,P.H.STOKES,C.A.COLLYER,J.M.GUSS, JRNL AUTH 2 J.M.MATTHEWS JRNL TITL STABILIZATION OF A BINARY PROTEIN COMPLEX BY INTEIN-MEDIATED JRNL TITL 2 CYCLIZATION JRNL REF PROTEIN SCI. V. 15 2612 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 17001033 JRNL DOI 10.1110/PS.062377006 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 44295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2368 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3207 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.970 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2503 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2229 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3360 ; 1.398 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5172 ; 0.794 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 5.977 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;28.087 ;22.414 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;12.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.105 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2827 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 555 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 476 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2248 ; 0.191 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1241 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1521 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.013 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 16 ; 0.207 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 81 ; 0.159 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.147 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1998 ; 1.755 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 667 ; 0.627 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2475 ; 1.989 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1101 ; 2.831 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 884 ; 3.769 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5731 ; 2.204 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 252 ; 9.039 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4688 ; 3.594 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : C X REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 C 19 C 327 3 REMARK 3 1 X 19 X 327 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 C (A): 923 ; 0.010 ; 0.050 REMARK 3 LOOSE POSITIONAL 1 C (A): 1403 ; 0.080 ; 5.000 REMARK 3 TIGHT THERMAL 1 C (A**2): 923 ; 0.090 ; 0.500 REMARK 3 LOOSE THERMAL 1 C (A**2): 1403 ; 0.650 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44295 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1RUT WITH MULTIPLE CONFORMERS, SOLVENT REMARK 200 AND ZINC ATOMS REMOVED REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M AMMONIUM SULPHATE, 0.1M TRIS, 15% REMARK 280 GLYCEROL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 THAT CONSISTS OF 2 CHAINS. BIOLOGICAL ASSEMBLY CONSISTS OF ONE REMARK 300 PROTEIN CHAIN, ONE HALF OF THE ASYMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU X 18 REMARK 465 ASN X 147 REMARK 465 GLY X 148 REMARK 465 HIS X 149 REMARK 465 LEU X 150 REMARK 465 ASN X 151 REMARK 465 SER X 152 REMARK 465 GLY X 289 REMARK 465 GLY X 290 REMARK 465 SER X 291 REMARK 465 GLY X 292 REMARK 465 GLY X 293 REMARK 465 SER X 294 REMARK 465 GLY X 295 REMARK 465 GLY X 296 REMARK 465 SER X 297 REMARK 465 THR X 328 REMARK 465 GLN X 329 REMARK 465 PHE X 330 REMARK 465 ASP X 331 REMARK 465 ALA X 332 REMARK 465 ALA X 333 REMARK 465 ASN X 334 REMARK 465 GLY X 335 REMARK 465 ILE X 336 REMARK 465 ASP X 337 REMARK 465 ASP X 338 REMARK 465 GLU X 339 REMARK 465 THR X 340 REMARK 465 ARG X 341 REMARK 465 GLU X 342 REMARK 465 SER X 343 REMARK 465 GLY X 344 REMARK 465 SER X 345 REMARK 465 ILE X 346 REMARK 465 GLU X 347 REMARK 465 PHE X 348 REMARK 465 LEU C 18 REMARK 465 ASN C 147 REMARK 465 GLY C 148 REMARK 465 HIS C 149 REMARK 465 LEU C 150 REMARK 465 ASN C 151 REMARK 465 SER C 152 REMARK 465 GLY C 289 REMARK 465 GLY C 290 REMARK 465 SER C 291 REMARK 465 GLY C 292 REMARK 465 GLY C 293 REMARK 465 SER C 294 REMARK 465 GLY C 295 REMARK 465 GLY C 296 REMARK 465 SER C 297 REMARK 465 THR C 328 REMARK 465 GLN C 329 REMARK 465 PHE C 330 REMARK 465 ASP C 331 REMARK 465 ALA C 332 REMARK 465 ALA C 333 REMARK 465 ASN C 334 REMARK 465 GLY C 335 REMARK 465 ILE C 336 REMARK 465 ASP C 337 REMARK 465 ASP C 338 REMARK 465 GLU C 339 REMARK 465 THR C 340 REMARK 465 ARG C 341 REMARK 465 GLU C 342 REMARK 465 SER C 343 REMARK 465 GLY C 344 REMARK 465 SER C 345 REMARK 465 ILE C 346 REMARK 465 GLU C 347 REMARK 465 PHE C 348 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 119 1.61 80.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 23 SG REMARK 620 2 CYS X 26 SG 111.5 REMARK 620 3 HIS X 44 ND1 104.3 99.1 REMARK 620 4 CYS X 47 SG 110.5 115.9 114.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 50 SG REMARK 620 2 CYS X 53 SG 110.7 REMARK 620 3 CYS X 73 SG 114.7 117.3 REMARK 620 4 ASP X 76 OD2 107.6 101.8 103.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 87 SG REMARK 620 2 CYS X 90 SG 108.2 REMARK 620 3 HIS X 109 ND1 102.2 99.8 REMARK 620 4 CYS X 112 SG 111.2 120.1 113.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS X 115 SG REMARK 620 2 CYS X 118 SG 110.9 REMARK 620 3 CYS X 137 SG 115.4 117.7 REMARK 620 4 ASP X 140 OD2 103.2 101.9 105.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 23 SG REMARK 620 2 CYS C 26 SG 112.1 REMARK 620 3 HIS C 44 ND1 104.3 99.7 REMARK 620 4 CYS C 47 SG 110.0 115.6 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 50 SG REMARK 620 2 CYS C 53 SG 109.7 REMARK 620 3 CYS C 73 SG 115.7 117.6 REMARK 620 4 ASP C 76 OD2 107.7 101.4 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 87 SG REMARK 620 2 CYS C 90 SG 108.1 REMARK 620 3 HIS C 109 ND1 102.0 97.8 REMARK 620 4 CYS C 112 SG 112.5 119.1 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 115 SG REMARK 620 2 CYS C 118 SG 110.2 REMARK 620 3 CYS C 137 SG 115.8 119.4 REMARK 620 4 ASP C 140 OD2 98.0 99.3 110.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL X 502 DBREF 2DFY X 18 152 UNP P61969 LMO4_MOUSE 18 152 DBREF 2DFY X 300 339 UNP P61969 LMO4_MOUSE 300 339 DBREF 2DFY C 18 152 UNP P61969 LMO4_MOUSE 18 152 DBREF 2DFY C 300 339 UNP P61969 LMO4_MOUSE 300 339 SEQADV 2DFY SER X 52 UNP P61969 CYS 52 ENGINEERED MUTATION SEQADV 2DFY SER X 64 UNP P61969 CYS 64 ENGINEERED MUTATION SEQADV 2DFY GLY X 289 UNP P61969 LINKER SEQADV 2DFY GLY X 290 UNP P61969 LINKER SEQADV 2DFY SER X 291 UNP P61969 LINKER SEQADV 2DFY GLY X 292 UNP P61969 LINKER SEQADV 2DFY GLY X 293 UNP P61969 LINKER SEQADV 2DFY SER X 294 UNP P61969 LINKER SEQADV 2DFY GLY X 295 UNP P61969 LINKER SEQADV 2DFY GLY X 296 UNP P61969 LINKER SEQADV 2DFY SER X 297 UNP P61969 LINKER SEQADV 2DFY GLY X 298 UNP P61969 LINKER SEQADV 2DFY GLY X 299 UNP P61969 LINKER SEQADV 2DFY THR X 340 UNP P61969 LINKER SEQADV 2DFY ARG X 341 UNP P61969 LINKER SEQADV 2DFY GLU X 342 UNP P61969 LINKER SEQADV 2DFY SER X 343 UNP P61969 LINKER SEQADV 2DFY GLY X 344 UNP P61969 LINKER SEQADV 2DFY SER X 345 UNP P61969 LINKER SEQADV 2DFY ILE X 346 UNP P61969 LINKER SEQADV 2DFY GLU X 347 UNP P61969 LINKER SEQADV 2DFY PHE X 348 UNP P61969 LINKER SEQADV 2DFY SER C 52 UNP P61969 CYS 52 ENGINEERED MUTATION SEQADV 2DFY SER C 64 UNP P61969 CYS 64 ENGINEERED MUTATION SEQADV 2DFY GLY C 289 UNP P61969 LINKER SEQADV 2DFY GLY C 290 UNP P61969 LINKER SEQADV 2DFY SER C 291 UNP P61969 LINKER SEQADV 2DFY GLY C 292 UNP P61969 LINKER SEQADV 2DFY GLY C 293 UNP P61969 LINKER SEQADV 2DFY SER C 294 UNP P61969 LINKER SEQADV 2DFY GLY C 295 UNP P61969 LINKER SEQADV 2DFY GLY C 296 UNP P61969 LINKER SEQADV 2DFY SER C 297 UNP P61969 LINKER SEQADV 2DFY GLY C 298 UNP P61969 LINKER SEQADV 2DFY GLY C 299 UNP P61969 LINKER SEQADV 2DFY THR C 340 UNP P61969 LINKER SEQADV 2DFY ARG C 341 UNP P61969 LINKER SEQADV 2DFY GLU C 342 UNP P61969 LINKER SEQADV 2DFY SER C 343 UNP P61969 LINKER SEQADV 2DFY GLY C 344 UNP P61969 LINKER SEQADV 2DFY SER C 345 UNP P61969 LINKER SEQADV 2DFY ILE C 346 UNP P61969 LINKER SEQADV 2DFY GLU C 347 UNP P61969 LINKER SEQADV 2DFY PHE C 348 UNP P61969 LINKER SEQRES 1 X 195 LEU SER TRP LYS ARG CYS ALA GLY CYS GLY GLY LYS ILE SEQRES 2 X 195 ALA ASP ARG PHE LEU LEU TYR ALA MET ASP SER TYR TRP SEQRES 3 X 195 HIS SER ARG CYS LEU LYS CYS SER SER CYS GLN ALA GLN SEQRES 4 X 195 LEU GLY ASP ILE GLY THR SER SER TYR THR LYS SER GLY SEQRES 5 X 195 MET ILE LEU CYS ARG ASN ASP TYR ILE ARG LEU PHE GLY SEQRES 6 X 195 ASN SER GLY ALA CYS SER ALA CYS GLY GLN SER ILE PRO SEQRES 7 X 195 ALA SER GLU LEU VAL MET ARG ALA GLN GLY ASN VAL TYR SEQRES 8 X 195 HIS LEU LYS CYS PHE THR CYS SER THR CYS ARG ASN ARG SEQRES 9 X 195 LEU VAL PRO GLY ASP ARG PHE HIS TYR ILE ASN GLY SER SEQRES 10 X 195 LEU PHE CYS GLU HIS ASP ARG PRO THR ALA LEU ILE ASN SEQRES 11 X 195 GLY HIS LEU ASN SER GLY GLY SER GLY GLY SER GLY GLY SEQRES 12 X 195 SER GLY GLY ASP VAL MET VAL VAL GLY GLU PRO THR LEU SEQRES 13 X 195 MET GLY GLY GLU PHE GLY ASP GLU ASP GLU ARG LEU ILE SEQRES 14 X 195 THR ARG LEU GLU ASN THR GLN PHE ASP ALA ALA ASN GLY SEQRES 15 X 195 ILE ASP ASP GLU THR ARG GLU SER GLY SER ILE GLU PHE SEQRES 1 C 195 LEU SER TRP LYS ARG CYS ALA GLY CYS GLY GLY LYS ILE SEQRES 2 C 195 ALA ASP ARG PHE LEU LEU TYR ALA MET ASP SER TYR TRP SEQRES 3 C 195 HIS SER ARG CYS LEU LYS CYS SER SER CYS GLN ALA GLN SEQRES 4 C 195 LEU GLY ASP ILE GLY THR SER SER TYR THR LYS SER GLY SEQRES 5 C 195 MET ILE LEU CYS ARG ASN ASP TYR ILE ARG LEU PHE GLY SEQRES 6 C 195 ASN SER GLY ALA CYS SER ALA CYS GLY GLN SER ILE PRO SEQRES 7 C 195 ALA SER GLU LEU VAL MET ARG ALA GLN GLY ASN VAL TYR SEQRES 8 C 195 HIS LEU LYS CYS PHE THR CYS SER THR CYS ARG ASN ARG SEQRES 9 C 195 LEU VAL PRO GLY ASP ARG PHE HIS TYR ILE ASN GLY SER SEQRES 10 C 195 LEU PHE CYS GLU HIS ASP ARG PRO THR ALA LEU ILE ASN SEQRES 11 C 195 GLY HIS LEU ASN SER GLY GLY SER GLY GLY SER GLY GLY SEQRES 12 C 195 SER GLY GLY ASP VAL MET VAL VAL GLY GLU PRO THR LEU SEQRES 13 C 195 MET GLY GLY GLU PHE GLY ASP GLU ASP GLU ARG LEU ILE SEQRES 14 C 195 THR ARG LEU GLU ASN THR GLN PHE ASP ALA ALA ASN GLY SEQRES 15 C 195 ILE ASP ASP GLU THR ARG GLU SER GLY SER ILE GLU PHE HET ZN X 601 1 HET ZN X 602 1 HET ZN X 603 1 HET ZN X 604 1 HET GOL X 502 6 HET ZN C 601 1 HET ZN C 602 1 HET ZN C 603 1 HET ZN C 604 1 HET GOL C 501 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 8(ZN 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *244(H2 O) HELIX 1 1 HIS X 44 LEU X 48 5 5 HELIX 2 2 GLN X 56 GLY X 61 1 6 HELIX 3 3 CYS X 73 GLY X 82 1 10 HELIX 4 4 LYS X 111 PHE X 113 5 3 HELIX 5 5 HIS X 139 ARG X 141 5 3 HELIX 6 6 HIS C 44 LEU C 48 5 5 HELIX 7 7 GLN C 56 GLY C 61 1 6 HELIX 8 8 CYS C 73 GLY C 82 1 10 HELIX 9 9 LYS C 111 PHE C 113 5 3 HELIX 10 10 HIS C 139 ARG C 141 5 3 SHEET 1 A 3 SER X 41 TRP X 43 0 SHEET 2 A 3 PHE X 34 ALA X 38 -1 N ALA X 38 O SER X 41 SHEET 3 A 3 THR X 323 GLU X 326 -1 O THR X 323 N TYR X 37 SHEET 1 B 3 MET X 70 LEU X 72 0 SHEET 2 B 3 SER X 63 LYS X 67 -1 N TYR X 65 O LEU X 72 SHEET 3 B 3 GLU X 319 LEU X 321 -1 O ARG X 320 N SER X 64 SHEET 1 C 2 GLY X 85 ALA X 86 0 SHEET 2 C 2 SER X 93 ILE X 94 -1 O ILE X 94 N GLY X 85 SHEET 1 D 3 ASN X 106 HIS X 109 0 SHEET 2 D 3 LEU X 99 ALA X 103 -1 N MET X 101 O TYR X 108 SHEET 3 D 3 THR X 308 LEU X 309 -1 O THR X 308 N VAL X 100 SHEET 1 E 3 SER X 134 CYS X 137 0 SHEET 2 E 3 ARG X 127 ILE X 131 -1 N ILE X 131 O SER X 134 SHEET 3 E 3 MET X 302 VAL X 303 -1 O MET X 302 N PHE X 128 SHEET 1 F 3 SER C 41 TRP C 43 0 SHEET 2 F 3 PHE C 34 ALA C 38 -1 N ALA C 38 O SER C 41 SHEET 3 F 3 THR C 323 GLU C 326 -1 O THR C 323 N TYR C 37 SHEET 1 G 3 MET C 70 LEU C 72 0 SHEET 2 G 3 SER C 63 LYS C 67 -1 N TYR C 65 O LEU C 72 SHEET 3 G 3 GLU C 319 LEU C 321 -1 O ARG C 320 N SER C 64 SHEET 1 H 2 GLY C 85 ALA C 86 0 SHEET 2 H 2 SER C 93 ILE C 94 -1 O ILE C 94 N GLY C 85 SHEET 1 I 3 ASN C 106 HIS C 109 0 SHEET 2 I 3 LEU C 99 ALA C 103 -1 N MET C 101 O TYR C 108 SHEET 3 I 3 THR C 308 LEU C 309 -1 O THR C 308 N VAL C 100 SHEET 1 J 3 SER C 134 CYS C 137 0 SHEET 2 J 3 ARG C 127 ILE C 131 -1 N ILE C 131 O SER C 134 SHEET 3 J 3 MET C 302 VAL C 303 -1 O MET C 302 N PHE C 128 LINK SG CYS X 23 ZN ZN X 601 1555 1555 2.35 LINK SG CYS X 26 ZN ZN X 601 1555 1555 2.33 LINK ND1 HIS X 44 ZN ZN X 601 1555 1555 2.12 LINK SG CYS X 47 ZN ZN X 601 1555 1555 2.29 LINK SG CYS X 50 ZN ZN X 602 1555 1555 2.34 LINK SG CYS X 53 ZN ZN X 602 1555 1555 2.30 LINK SG CYS X 73 ZN ZN X 602 1555 1555 2.33 LINK OD2 ASP X 76 ZN ZN X 602 1555 1555 2.07 LINK SG CYS X 87 ZN ZN X 604 1555 1555 2.47 LINK SG CYS X 90 ZN ZN X 604 1555 1555 2.29 LINK ND1 HIS X 109 ZN ZN X 604 1555 1555 2.13 LINK SG CYS X 112 ZN ZN X 604 1555 1555 2.34 LINK SG CYS X 115 ZN ZN X 603 1555 1555 2.32 LINK SG CYS X 118 ZN ZN X 603 1555 1555 2.33 LINK SG CYS X 137 ZN ZN X 603 1555 1555 2.30 LINK OD2 ASP X 140 ZN ZN X 603 1555 1555 2.00 LINK SG CYS C 23 ZN ZN C 601 1555 1555 2.33 LINK SG CYS C 26 ZN ZN C 601 1555 1555 2.32 LINK ND1 HIS C 44 ZN ZN C 601 1555 1555 2.15 LINK SG CYS C 47 ZN ZN C 601 1555 1555 2.31 LINK SG CYS C 50 ZN ZN C 602 1555 1555 2.34 LINK SG CYS C 53 ZN ZN C 602 1555 1555 2.32 LINK SG CYS C 73 ZN ZN C 602 1555 1555 2.33 LINK OD2 ASP C 76 ZN ZN C 602 1555 1555 2.06 LINK SG CYS C 87 ZN ZN C 604 1555 1555 2.39 LINK SG CYS C 90 ZN ZN C 604 1555 1555 2.34 LINK ND1 HIS C 109 ZN ZN C 604 1555 1555 2.18 LINK SG CYS C 112 ZN ZN C 604 1555 1555 2.34 LINK SG CYS C 115 ZN ZN C 603 1555 1555 2.34 LINK SG CYS C 118 ZN ZN C 603 1555 1555 2.32 LINK SG CYS C 137 ZN ZN C 603 1555 1555 2.32 LINK OD2 ASP C 140 ZN ZN C 603 1555 1555 2.02 SITE 1 AC1 4 CYS X 23 CYS X 26 HIS X 44 CYS X 47 SITE 1 AC2 4 CYS X 50 CYS X 53 CYS X 73 ASP X 76 SITE 1 AC3 4 CYS X 115 CYS X 118 CYS X 137 ASP X 140 SITE 1 AC4 4 CYS X 87 CYS X 90 HIS X 109 CYS X 112 SITE 1 AC5 4 CYS C 23 CYS C 26 HIS C 44 CYS C 47 SITE 1 AC6 4 CYS C 50 CYS C 53 CYS C 73 ASP C 76 SITE 1 AC7 4 CYS C 115 CYS C 118 CYS C 137 ASP C 140 SITE 1 AC8 4 CYS C 87 CYS C 90 HIS C 109 CYS C 112 SITE 1 AC9 5 ARG C 22 GLY C 28 LYS C 29 ARG X 79 SITE 2 AC9 5 HOH X 697 SITE 1 BC1 5 ARG C 79 HOH C 696 ARG X 22 GLY X 28 SITE 2 BC1 5 LYS X 29 CRYST1 61.333 61.333 93.019 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016300 0.009410 0.000000 0.00000 SCALE2 0.000000 0.018830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010750 0.00000