data_2DGC # _entry.id 2DGC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGC pdb_00002dgc 10.2210/pdb2dgc/pdb RCSB PDT029 ? ? WWPDB D_1000177993 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-03-08 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGC _pdbx_database_status.recvd_initial_deposition_date 1995-09-28 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1DGC _pdbx_database_related.details '2DGC IS A HIGH RESOLUTION, FULLY REFINED VERSION OF 1DGC THAT INCLUDES 46 WATER MOLECULES.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keller, W.' 1 'Koenig, P.' 2 'Richmond, T.J.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition.' J.Mol.Biol. 254 657 667 1995 JMOBAK UK 0022-2836 0070 ? 7500340 10.1006/jmbi.1995.0645 1 'The X-Ray Structure of the GCN4-bZIP Bound to ATF/CREB Site DNA Shows the Complex Depends on DNA Flexibility' J.Mol.Biol. 233 139 ? 1993 JMOBAK UK 0022-2836 0070 ? ? ? 2 ;The GCN4 Basic Region Leucine Zipper Binds DNA as a Dimer of Uninterrupted Alpha Helices: Crystal Structure of the Protein-DNA Complex ; 'Cell(Cambridge,Mass.)' 71 1223 ? 1992 CELLB5 US 0092-8674 0998 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keller, W.' 1 ? primary 'Konig, P.' 2 ? primary 'Richmond, T.J.' 3 ? 1 'Koenig, P.' 4 ? 1 'Richmond, T.J.' 5 ? 2 'Ellenberger, T.E.' 6 ? 2 'Brandl, C.J.' 7 ? 2 'Struhl, K.' 8 ? 2 'Harrison, S.C.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') ; 5820.771 1 ? ? ? ? 2 polymer nat 'PROTEIN (GCN4)' 7375.564 1 ? ? ? ? 3 water nat water 18.015 46 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DG)(DA)(DG)(DA)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC)' TGGAGATGACGTCATCTCC B ? 2 'polypeptide(L)' no no MIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER MIVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER A ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DG n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DT n 1 13 DC n 1 14 DA n 1 15 DT n 1 16 DC n 1 17 DT n 1 18 DC n 1 19 DC n 2 1 MET n 2 2 ILE n 2 3 VAL n 2 4 PRO n 2 5 GLU n 2 6 SER n 2 7 SER n 2 8 ASP n 2 9 PRO n 2 10 ALA n 2 11 ALA n 2 12 LEU n 2 13 LYS n 2 14 ARG n 2 15 ALA n 2 16 ARG n 2 17 ASN n 2 18 THR n 2 19 GLU n 2 20 ALA n 2 21 ALA n 2 22 ARG n 2 23 ARG n 2 24 SER n 2 25 ARG n 2 26 ALA n 2 27 ARG n 2 28 LYS n 2 29 LEU n 2 30 GLN n 2 31 ARG n 2 32 MET n 2 33 LYS n 2 34 GLN n 2 35 LEU n 2 36 GLU n 2 37 ASP n 2 38 LYS n 2 39 VAL n 2 40 GLU n 2 41 GLU n 2 42 LEU n 2 43 LEU n 2 44 SER n 2 45 LYS n 2 46 ASN n 2 47 TYR n 2 48 HIS n 2 49 LEU n 2 50 GLU n 2 51 ASN n 2 52 GLU n 2 53 VAL n 2 54 ALA n 2 55 ARG n 2 56 LEU n 2 57 LYS n 2 58 LYS n 2 59 LEU n 2 60 VAL n 2 61 GLY n 2 62 GLU n 2 63 ARG n # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ;baker's yeast ; _entity_src_nat.pdbx_organism_scientific 'Saccharomyces cerevisiae' _entity_src_nat.pdbx_ncbi_taxonomy_id 4932 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -10 -10 DT T B . n A 1 2 DG 2 -9 -9 DG G B . n A 1 3 DG 3 -8 -8 DG G B . n A 1 4 DA 4 -7 -7 DA A B . n A 1 5 DG 5 -6 -6 DG G B . n A 1 6 DA 6 -5 -5 DA A B . n A 1 7 DT 7 -4 -4 DT T B . n A 1 8 DG 8 -3 -3 DG G B . n A 1 9 DA 9 -2 -2 DA A B . n A 1 10 DC 10 -1 -1 DC C B . n A 1 11 DG 11 1 1 DG G B . n A 1 12 DT 12 2 2 DT T B . n A 1 13 DC 13 3 3 DC C B . n A 1 14 DA 14 4 4 DA A B . n A 1 15 DT 15 5 5 DT T B . n A 1 16 DC 16 6 6 DC C B . n A 1 17 DT 17 7 7 DT T B . n A 1 18 DC 18 8 8 DC C B . n A 1 19 DC 19 9 9 DC C B . n B 2 1 MET 1 219 ? ? ? A . n B 2 2 ILE 2 220 ? ? ? A . n B 2 3 VAL 3 221 ? ? ? A . n B 2 4 PRO 4 222 ? ? ? A . n B 2 5 GLU 5 223 ? ? ? A . n B 2 6 SER 6 224 ? ? ? A . n B 2 7 SER 7 225 ? ? ? A . n B 2 8 ASP 8 226 ? ? ? A . n B 2 9 PRO 9 227 ? ? ? A . n B 2 10 ALA 10 228 ? ? ? A . n B 2 11 ALA 11 229 229 ALA ALA A . n B 2 12 LEU 12 230 230 LEU LEU A . n B 2 13 LYS 13 231 231 LYS LYS A . n B 2 14 ARG 14 232 232 ARG ARG A . n B 2 15 ALA 15 233 233 ALA ALA A . n B 2 16 ARG 16 234 234 ARG ARG A . n B 2 17 ASN 17 235 235 ASN ASN A . n B 2 18 THR 18 236 236 THR THR A . n B 2 19 GLU 19 237 237 GLU GLU A . n B 2 20 ALA 20 238 238 ALA ALA A . n B 2 21 ALA 21 239 239 ALA ALA A . n B 2 22 ARG 22 240 240 ARG ARG A . n B 2 23 ARG 23 241 241 ARG ARG A . n B 2 24 SER 24 242 242 SER SER A . n B 2 25 ARG 25 243 243 ARG ARG A . n B 2 26 ALA 26 244 244 ALA ALA A . n B 2 27 ARG 27 245 245 ARG ARG A . n B 2 28 LYS 28 246 246 LYS LYS A . n B 2 29 LEU 29 247 247 LEU LEU A . n B 2 30 GLN 30 248 248 GLN GLN A . n B 2 31 ARG 31 249 249 ARG ARG A . n B 2 32 MET 32 250 250 MET MET A . n B 2 33 LYS 33 251 251 LYS LYS A . n B 2 34 GLN 34 252 252 GLN GLN A . n B 2 35 LEU 35 253 253 LEU LEU A . n B 2 36 GLU 36 254 254 GLU GLU A . n B 2 37 ASP 37 255 255 ASP ASP A . n B 2 38 LYS 38 256 256 LYS LYS A . n B 2 39 VAL 39 257 257 VAL VAL A . n B 2 40 GLU 40 258 258 GLU GLU A . n B 2 41 GLU 41 259 259 GLU GLU A . n B 2 42 LEU 42 260 260 LEU LEU A . n B 2 43 LEU 43 261 261 LEU LEU A . n B 2 44 SER 44 262 262 SER SER A . n B 2 45 LYS 45 263 263 LYS LYS A . n B 2 46 ASN 46 264 264 ASN ASN A . n B 2 47 TYR 47 265 265 TYR TYR A . n B 2 48 HIS 48 266 266 HIS HIS A . n B 2 49 LEU 49 267 267 LEU LEU A . n B 2 50 GLU 50 268 268 GLU GLU A . n B 2 51 ASN 51 269 269 ASN ASN A . n B 2 52 GLU 52 270 270 GLU GLU A . n B 2 53 VAL 53 271 271 VAL VAL A . n B 2 54 ALA 54 272 272 ALA ALA A . n B 2 55 ARG 55 273 273 ARG ARG A . n B 2 56 LEU 56 274 274 LEU LEU A . n B 2 57 LYS 57 275 275 LYS LYS A . n B 2 58 LYS 58 276 276 LYS LYS A . n B 2 59 LEU 59 277 277 LEU LEU A . n B 2 60 VAL 60 278 ? ? ? A . n B 2 61 GLY 61 279 ? ? ? A . n B 2 62 GLU 62 280 ? ? ? A . n B 2 63 ARG 63 281 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 10 1 HOH HOH B . C 3 HOH 2 11 2 HOH HOH B . C 3 HOH 3 12 3 HOH HOH B . C 3 HOH 4 13 4 HOH HOH B . C 3 HOH 5 14 6 HOH HOH B . C 3 HOH 6 15 7 HOH HOH B . C 3 HOH 7 16 8 HOH HOH B . C 3 HOH 8 17 10 HOH HOH B . C 3 HOH 9 18 11 HOH HOH B . C 3 HOH 10 19 12 HOH HOH B . C 3 HOH 11 20 13 HOH HOH B . C 3 HOH 12 21 15 HOH HOH B . C 3 HOH 13 22 17 HOH HOH B . C 3 HOH 14 23 22 HOH HOH B . C 3 HOH 15 24 24 HOH HOH B . C 3 HOH 16 25 28 HOH HOH B . C 3 HOH 17 26 29 HOH HOH B . C 3 HOH 18 27 31 HOH HOH B . C 3 HOH 19 28 34 HOH HOH B . C 3 HOH 20 29 35 HOH HOH B . C 3 HOH 21 30 36 HOH HOH B . C 3 HOH 22 31 40 HOH HOH B . C 3 HOH 23 32 41 HOH HOH B . C 3 HOH 24 33 45 HOH HOH B . D 3 HOH 1 5 5 HOH HOH A . D 3 HOH 2 9 9 HOH HOH A . D 3 HOH 3 14 14 HOH HOH A . D 3 HOH 4 16 16 HOH HOH A . D 3 HOH 5 18 18 HOH HOH A . D 3 HOH 6 19 19 HOH HOH A . D 3 HOH 7 20 20 HOH HOH A . D 3 HOH 8 21 21 HOH HOH A . D 3 HOH 9 23 23 HOH HOH A . D 3 HOH 10 25 25 HOH HOH A . D 3 HOH 11 26 26 HOH HOH A . D 3 HOH 12 27 27 HOH HOH A . D 3 HOH 13 30 30 HOH HOH A . D 3 HOH 14 32 32 HOH HOH A . D 3 HOH 15 33 33 HOH HOH A . D 3 HOH 16 37 37 HOH HOH A . D 3 HOH 17 38 38 HOH HOH A . D 3 HOH 18 39 39 HOH HOH A . D 3 HOH 19 42 42 HOH HOH A . D 3 HOH 20 43 43 HOH HOH A . D 3 HOH 21 44 44 HOH HOH A . D 3 HOH 22 46 46 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 276 ? CG ? B LYS 58 CG 2 1 Y 1 A LYS 276 ? CD ? B LYS 58 CD 3 1 Y 1 A LYS 276 ? CE ? B LYS 58 CE 4 1 Y 1 A LYS 276 ? NZ ? B LYS 58 NZ 5 1 Y 1 A LEU 277 ? CG ? B LEU 59 CG 6 1 Y 1 A LEU 277 ? CD1 ? B LEU 59 CD1 7 1 Y 1 A LEU 277 ? CD2 ? B LEU 59 CD2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 OSCREF 'data reduction' . ? 2 OSCKRUNCH 'data reduction' . ? 3 # _cell.entry_id 2DGC _cell.length_a 58.660 _cell.length_b 58.660 _cell.length_c 86.880 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DGC _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 2DGC _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.82 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_details 'pH 4.60, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 'PEG 6000' ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 'NA CITRATE' ? ? ? 1 5 1 'NA AZIDE' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.92 # _reflns.entry_id 2DGC _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.000 _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 2.200 _reflns.number_obs 6597 _reflns.number_all ? _reflns.percent_possible_obs 80.800 _reflns.pdbx_Rmerge_I_obs 0.0900000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.000 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2DGC _refine.ls_number_reflns_obs 5576 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 80.700 _refine.ls_R_factor_obs 0.2140000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2140000 _refine.ls_R_factor_R_free 0.3160000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 41.30 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DGC _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 427 _refine_hist.pdbx_number_atoms_nucleic_acid 386 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 859 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 6.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na 0.022 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na 3.64 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot 1.13 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARAM11.DNA _pdbx_xplor_file.topol_file ? _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2DGC _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2DGC _struct.title 'GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGC _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'BASIC DOMAIN, LEUCINE ZIPPER, DNA BINDING, EUKARYOTIC REGULATORY PROTEIN, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP GCN4_YEAST 2 P03069 ? ? ? 2 PDB 2DGC 1 2DGC ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DGC A 2 ? 63 ? P03069 220 ? 281 ? 220 281 2 2 2DGC B 1 ? 19 ? 2DGC -10 ? 9 ? -10 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 117.3200000000 -1.0000000000 0.0000000000 0.0000000000 117.3200000000 0.0000000000 0.0000000000 -1.0000000000 43.4400000000 # _struct_biol.id 1 _struct_biol.details ;THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA COMPLEX PER ASYMMETRIC UNIT. MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND TRANSLATION VECTOR TO THE COORDINATES X Y Z: SYMMETRY THE CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS PRESENTED BELOW GENERATE THE SUBUNITS OF THE POLYMERIC MOLECULE. APPLIED TO RESIDUES: A 229 .. 277 APPLIED TO RESIDUES: B -10 .. 9 SYMMETRY1 1 0.000000 -1.000000 0.000000 117.32000 SYMMETRY2 1 -1.000000 0.000000 0.000000 117.32000 SYMMETRY3 1 0.000000 0.000000 -1.000000 43.44000 ; _struct_biol.pdbx_parent_biol_id ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id B _struct_conf.beg_label_seq_id 11 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id B _struct_conf.end_label_seq_id 58 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 229 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 276 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 48 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 19 N3 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 19 O2 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 19 N4 ? ? B DG -9 B DC 9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 18 N3 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 18 O2 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 18 N4 ? ? B DG -8 B DC 8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 17 N3 ? ? B DA -7 B DT 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 17 O4 ? ? B DA -7 B DT 7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 16 N3 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 16 O2 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 16 N4 ? ? B DG -6 B DC 6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 15 N3 ? ? B DA -5 B DT 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 15 O4 ? ? B DA -5 B DT 5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 14 N1 ? ? B DT -4 B DA 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 14 N6 ? ? B DT -4 B DA 4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DC 13 N3 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DC 13 O2 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 O6 ? ? ? 1_555 A DC 13 N4 ? ? B DG -3 B DC 3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 12 N3 ? ? B DA -2 B DT 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 12 O4 ? ? B DA -2 B DT 2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 11 N1 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 11 O6 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 11 N2 ? ? B DC -1 B DG 1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DC 10 N3 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DC 10 O2 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DC 10 N4 ? ? B DG 1 B DC -1 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 9 N1 ? ? B DT 2 B DA -2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 9 N6 ? ? B DT 2 B DA -2 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 8 N1 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 8 O6 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 8 N2 ? ? B DC 3 B DG -3 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 7 N3 ? ? B DA 4 B DT -4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 7 O4 ? ? B DA 4 B DT -4 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 15 N3 ? ? ? 1_555 A DA 6 N1 ? ? B DT 5 B DA -5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 15 O4 ? ? ? 1_555 A DA 6 N6 ? ? B DT 5 B DA -5 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 5 N1 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 5 O6 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 5 N2 ? ? B DC 6 B DG -6 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 4 N1 ? ? B DT 7 B DA -7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 4 N6 ? ? B DT 7 B DA -7 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 18 N3 ? ? ? 1_555 A DG 3 N1 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DC 18 N4 ? ? ? 1_555 A DG 3 O6 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DC 18 O2 ? ? ? 1_555 A DG 3 N2 ? ? B DC 8 B DG -8 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DC 19 N3 ? ? ? 1_555 A DG 2 N1 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DC 19 N4 ? ? ? 1_555 A DG 2 O6 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DC 19 O2 ? ? ? 1_555 A DG 2 N2 ? ? B DC 9 B DG -9 8_775 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" B DT -10 ? ? "C4'" B DT -10 ? ? 1.570 1.512 0.058 0.007 N 2 1 N1 B DT -10 ? ? C2 B DT -10 ? ? 1.432 1.376 0.056 0.008 N 3 1 "C5'" B DG -9 ? ? "C4'" B DG -9 ? ? 1.570 1.512 0.058 0.007 N 4 1 C6 B DG -9 ? ? N1 B DG -9 ? ? 1.346 1.391 -0.045 0.007 N 5 1 P B DG -8 ? ? "O5'" B DG -8 ? ? 1.688 1.593 0.095 0.010 N 6 1 "C5'" B DG -8 ? ? "C4'" B DG -8 ? ? 1.570 1.512 0.058 0.007 N 7 1 N9 B DA -2 ? ? C4 B DA -2 ? ? 1.419 1.374 0.045 0.006 N 8 1 C6 B DG 1 ? ? N1 B DG 1 ? ? 1.340 1.391 -0.051 0.007 N 9 1 C5 B DT 2 ? ? C7 B DT 2 ? ? 1.560 1.496 0.064 0.006 N 10 1 P B DC 6 ? ? "O5'" B DC 6 ? ? 1.685 1.593 0.092 0.010 N 11 1 "O3'" B DC 6 ? ? P B DT 7 ? ? 1.724 1.607 0.117 0.012 Y 12 1 P B DC 8 ? ? "O5'" B DC 8 ? ? 1.675 1.593 0.082 0.010 N 13 1 P B DC 9 ? ? "O5'" B DC 9 ? ? 1.682 1.593 0.089 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT -10 ? ? "C1'" B DT -10 ? ? "C2'" B DT -10 ? ? 98.97 105.90 -6.93 0.80 N 2 1 "O4'" B DT -10 ? ? "C1'" B DT -10 ? ? N1 B DT -10 ? ? 117.99 108.30 9.69 0.30 N 3 1 C4 B DT -10 ? ? C5 B DT -10 ? ? C6 B DT -10 ? ? 122.13 118.00 4.13 0.60 N 4 1 N3 B DT -10 ? ? C2 B DT -10 ? ? O2 B DT -10 ? ? 117.50 122.30 -4.80 0.60 N 5 1 "O4'" B DG -9 ? ? "C1'" B DG -9 ? ? N9 B DG -9 ? ? 102.06 108.00 -5.94 0.70 N 6 1 "O4'" B DG -8 ? ? "C1'" B DG -8 ? ? N9 B DG -8 ? ? 113.49 108.30 5.19 0.30 N 7 1 "C5'" B DA -7 ? ? "C4'" B DA -7 ? ? "O4'" B DA -7 ? ? 118.89 109.80 9.09 1.10 N 8 1 "O4'" B DA -7 ? ? "C1'" B DA -7 ? ? "C2'" B DA -7 ? ? 100.45 105.90 -5.45 0.80 N 9 1 "C1'" B DA -5 ? ? "O4'" B DA -5 ? ? "C4'" B DA -5 ? ? 115.79 110.30 5.49 0.70 N 10 1 "O4'" B DA -5 ? ? "C1'" B DA -5 ? ? "C2'" B DA -5 ? ? 99.77 105.90 -6.13 0.80 N 11 1 "O4'" B DT -4 ? ? "C1'" B DT -4 ? ? N1 B DT -4 ? ? 110.82 108.30 2.52 0.30 N 12 1 "C3'" B DT -4 ? ? "O3'" B DT -4 ? ? P B DG -3 ? ? 132.23 119.70 12.53 1.20 Y 13 1 "O4'" B DG -3 ? ? "C4'" B DG -3 ? ? "C3'" B DG -3 ? ? 110.96 106.00 4.96 0.60 N 14 1 "C3'" B DG -3 ? ? "O3'" B DG -3 ? ? P B DA -2 ? ? 130.42 119.70 10.72 1.20 Y 15 1 "O4'" B DA -2 ? ? "C4'" B DA -2 ? ? "C3'" B DA -2 ? ? 110.25 106.00 4.25 0.60 N 16 1 "C3'" B DA -2 ? ? "O3'" B DA -2 ? ? P B DC -1 ? ? 127.95 119.70 8.25 1.20 Y 17 1 "O4'" B DC -1 ? ? "C1'" B DC -1 ? ? N1 B DC -1 ? ? 103.13 108.00 -4.87 0.70 N 18 1 "C3'" B DG 1 ? ? "O3'" B DG 1 ? ? P B DT 2 ? ? 133.97 119.70 14.27 1.20 Y 19 1 N1 B DT 2 ? ? C2 B DT 2 ? ? N3 B DT 2 ? ? 118.21 114.60 3.61 0.60 N 20 1 N3 B DT 2 ? ? C2 B DT 2 ? ? O2 B DT 2 ? ? 117.64 122.30 -4.66 0.60 N 21 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? "C2'" B DC 3 ? ? 99.80 105.90 -6.10 0.80 N 22 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 111.80 108.30 3.50 0.30 N 23 1 N1 B DC 3 ? ? C2 B DC 3 ? ? O2 B DC 3 ? ? 124.34 118.90 5.44 0.60 N 24 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 103.67 108.00 -4.33 0.70 N 25 1 "C3'" B DA 4 ? ? "O3'" B DA 4 ? ? P B DT 5 ? ? 130.63 119.70 10.93 1.20 Y 26 1 "C5'" B DT 5 ? ? "C4'" B DT 5 ? ? "C3'" B DT 5 ? ? 101.92 114.10 -12.18 1.80 N 27 1 "C5'" B DT 5 ? ? "C4'" B DT 5 ? ? "O4'" B DT 5 ? ? 116.60 109.80 6.80 1.10 N 28 1 "C1'" B DT 5 ? ? "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? 103.04 110.10 -7.06 1.00 N 29 1 C4 B DT 5 ? ? C5 B DT 5 ? ? C6 B DT 5 ? ? 122.02 118.00 4.02 0.60 N 30 1 C6 B DT 5 ? ? C5 B DT 5 ? ? C7 B DT 5 ? ? 118.38 122.90 -4.52 0.60 N 31 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? "C2'" B DC 6 ? ? 100.58 105.90 -5.32 0.80 N 32 1 "O4'" B DC 6 ? ? "C1'" B DC 6 ? ? N1 B DC 6 ? ? 112.36 108.30 4.06 0.30 N 33 1 N1 B DC 6 ? ? C2 B DC 6 ? ? O2 B DC 6 ? ? 123.06 118.90 4.16 0.60 N 34 1 "C5'" B DT 7 ? ? "C4'" B DT 7 ? ? "C3'" B DT 7 ? ? 102.97 114.10 -11.13 1.80 N 35 1 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 116.95 122.30 -5.35 0.60 N 36 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 112.75 108.30 4.45 0.30 N 37 1 N1 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 123.61 118.90 4.71 0.60 N 38 1 N3 B DC 8 ? ? C2 B DC 8 ? ? O2 B DC 8 ? ? 117.60 121.90 -4.30 0.70 N 39 1 "C3'" B DC 8 ? ? "O3'" B DC 8 ? ? P B DC 9 ? ? 130.00 119.70 10.30 1.20 Y 40 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.64 108.30 3.34 0.30 N # _pdbx_entry_details.entry_id 2DGC _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;AMINO ACID NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE 281 AMINO ACIDS OF INTACT GCN4. RESIDUE NUMBERING OF NUCLEOTIDES: 5' T G G A G A T G A C G T C A T C T -10 -9 -8 -7 -6 -5 -4 -3 -2 -1 1 2 3 4 5 6 7 C C 3' 8 9 ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 219 ? B MET 1 2 1 Y 1 A ILE 220 ? B ILE 2 3 1 Y 1 A VAL 221 ? B VAL 3 4 1 Y 1 A PRO 222 ? B PRO 4 5 1 Y 1 A GLU 223 ? B GLU 5 6 1 Y 1 A SER 224 ? B SER 6 7 1 Y 1 A SER 225 ? B SER 7 8 1 Y 1 A ASP 226 ? B ASP 8 9 1 Y 1 A PRO 227 ? B PRO 9 10 1 Y 1 A ALA 228 ? B ALA 10 11 1 Y 1 A VAL 278 ? B VAL 60 12 1 Y 1 A GLY 279 ? B GLY 61 13 1 Y 1 A GLU 280 ? B GLU 62 14 1 Y 1 A ARG 281 ? B ARG 63 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 DA OP3 O N N 74 DA P P N N 75 DA OP1 O N N 76 DA OP2 O N N 77 DA "O5'" O N N 78 DA "C5'" C N N 79 DA "C4'" C N R 80 DA "O4'" O N N 81 DA "C3'" C N S 82 DA "O3'" O N N 83 DA "C2'" C N N 84 DA "C1'" C N R 85 DA N9 N Y N 86 DA C8 C Y N 87 DA N7 N Y N 88 DA C5 C Y N 89 DA C6 C Y N 90 DA N6 N N N 91 DA N1 N Y N 92 DA C2 C Y N 93 DA N3 N Y N 94 DA C4 C Y N 95 DA HOP3 H N N 96 DA HOP2 H N N 97 DA "H5'" H N N 98 DA "H5''" H N N 99 DA "H4'" H N N 100 DA "H3'" H N N 101 DA "HO3'" H N N 102 DA "H2'" H N N 103 DA "H2''" H N N 104 DA "H1'" H N N 105 DA H8 H N N 106 DA H61 H N N 107 DA H62 H N N 108 DA H2 H N N 109 DC OP3 O N N 110 DC P P N N 111 DC OP1 O N N 112 DC OP2 O N N 113 DC "O5'" O N N 114 DC "C5'" C N N 115 DC "C4'" C N R 116 DC "O4'" O N N 117 DC "C3'" C N S 118 DC "O3'" O N N 119 DC "C2'" C N N 120 DC "C1'" C N R 121 DC N1 N N N 122 DC C2 C N N 123 DC O2 O N N 124 DC N3 N N N 125 DC C4 C N N 126 DC N4 N N N 127 DC C5 C N N 128 DC C6 C N N 129 DC HOP3 H N N 130 DC HOP2 H N N 131 DC "H5'" H N N 132 DC "H5''" H N N 133 DC "H4'" H N N 134 DC "H3'" H N N 135 DC "HO3'" H N N 136 DC "H2'" H N N 137 DC "H2''" H N N 138 DC "H1'" H N N 139 DC H41 H N N 140 DC H42 H N N 141 DC H5 H N N 142 DC H6 H N N 143 DG OP3 O N N 144 DG P P N N 145 DG OP1 O N N 146 DG OP2 O N N 147 DG "O5'" O N N 148 DG "C5'" C N N 149 DG "C4'" C N R 150 DG "O4'" O N N 151 DG "C3'" C N S 152 DG "O3'" O N N 153 DG "C2'" C N N 154 DG "C1'" C N R 155 DG N9 N Y N 156 DG C8 C Y N 157 DG N7 N Y N 158 DG C5 C Y N 159 DG C6 C N N 160 DG O6 O N N 161 DG N1 N N N 162 DG C2 C N N 163 DG N2 N N N 164 DG N3 N N N 165 DG C4 C Y N 166 DG HOP3 H N N 167 DG HOP2 H N N 168 DG "H5'" H N N 169 DG "H5''" H N N 170 DG "H4'" H N N 171 DG "H3'" H N N 172 DG "HO3'" H N N 173 DG "H2'" H N N 174 DG "H2''" H N N 175 DG "H1'" H N N 176 DG H8 H N N 177 DG H1 H N N 178 DG H21 H N N 179 DG H22 H N N 180 DT OP3 O N N 181 DT P P N N 182 DT OP1 O N N 183 DT OP2 O N N 184 DT "O5'" O N N 185 DT "C5'" C N N 186 DT "C4'" C N R 187 DT "O4'" O N N 188 DT "C3'" C N S 189 DT "O3'" O N N 190 DT "C2'" C N N 191 DT "C1'" C N R 192 DT N1 N N N 193 DT C2 C N N 194 DT O2 O N N 195 DT N3 N N N 196 DT C4 C N N 197 DT O4 O N N 198 DT C5 C N N 199 DT C7 C N N 200 DT C6 C N N 201 DT HOP3 H N N 202 DT HOP2 H N N 203 DT "H5'" H N N 204 DT "H5''" H N N 205 DT "H4'" H N N 206 DT "H3'" H N N 207 DT "HO3'" H N N 208 DT "H2'" H N N 209 DT "H2''" H N N 210 DT "H1'" H N N 211 DT H3 H N N 212 DT H71 H N N 213 DT H72 H N N 214 DT H73 H N N 215 DT H6 H N N 216 GLN N N N N 217 GLN CA C N S 218 GLN C C N N 219 GLN O O N N 220 GLN CB C N N 221 GLN CG C N N 222 GLN CD C N N 223 GLN OE1 O N N 224 GLN NE2 N N N 225 GLN OXT O N N 226 GLN H H N N 227 GLN H2 H N N 228 GLN HA H N N 229 GLN HB2 H N N 230 GLN HB3 H N N 231 GLN HG2 H N N 232 GLN HG3 H N N 233 GLN HE21 H N N 234 GLN HE22 H N N 235 GLN HXT H N N 236 GLU N N N N 237 GLU CA C N S 238 GLU C C N N 239 GLU O O N N 240 GLU CB C N N 241 GLU CG C N N 242 GLU CD C N N 243 GLU OE1 O N N 244 GLU OE2 O N N 245 GLU OXT O N N 246 GLU H H N N 247 GLU H2 H N N 248 GLU HA H N N 249 GLU HB2 H N N 250 GLU HB3 H N N 251 GLU HG2 H N N 252 GLU HG3 H N N 253 GLU HE2 H N N 254 GLU HXT H N N 255 GLY N N N N 256 GLY CA C N N 257 GLY C C N N 258 GLY O O N N 259 GLY OXT O N N 260 GLY H H N N 261 GLY H2 H N N 262 GLY HA2 H N N 263 GLY HA3 H N N 264 GLY HXT H N N 265 HIS N N N N 266 HIS CA C N S 267 HIS C C N N 268 HIS O O N N 269 HIS CB C N N 270 HIS CG C Y N 271 HIS ND1 N Y N 272 HIS CD2 C Y N 273 HIS CE1 C Y N 274 HIS NE2 N Y N 275 HIS OXT O N N 276 HIS H H N N 277 HIS H2 H N N 278 HIS HA H N N 279 HIS HB2 H N N 280 HIS HB3 H N N 281 HIS HD1 H N N 282 HIS HD2 H N N 283 HIS HE1 H N N 284 HIS HE2 H N N 285 HIS HXT H N N 286 HOH O O N N 287 HOH H1 H N N 288 HOH H2 H N N 289 ILE N N N N 290 ILE CA C N S 291 ILE C C N N 292 ILE O O N N 293 ILE CB C N S 294 ILE CG1 C N N 295 ILE CG2 C N N 296 ILE CD1 C N N 297 ILE OXT O N N 298 ILE H H N N 299 ILE H2 H N N 300 ILE HA H N N 301 ILE HB H N N 302 ILE HG12 H N N 303 ILE HG13 H N N 304 ILE HG21 H N N 305 ILE HG22 H N N 306 ILE HG23 H N N 307 ILE HD11 H N N 308 ILE HD12 H N N 309 ILE HD13 H N N 310 ILE HXT H N N 311 LEU N N N N 312 LEU CA C N S 313 LEU C C N N 314 LEU O O N N 315 LEU CB C N N 316 LEU CG C N N 317 LEU CD1 C N N 318 LEU CD2 C N N 319 LEU OXT O N N 320 LEU H H N N 321 LEU H2 H N N 322 LEU HA H N N 323 LEU HB2 H N N 324 LEU HB3 H N N 325 LEU HG H N N 326 LEU HD11 H N N 327 LEU HD12 H N N 328 LEU HD13 H N N 329 LEU HD21 H N N 330 LEU HD22 H N N 331 LEU HD23 H N N 332 LEU HXT H N N 333 LYS N N N N 334 LYS CA C N S 335 LYS C C N N 336 LYS O O N N 337 LYS CB C N N 338 LYS CG C N N 339 LYS CD C N N 340 LYS CE C N N 341 LYS NZ N N N 342 LYS OXT O N N 343 LYS H H N N 344 LYS H2 H N N 345 LYS HA H N N 346 LYS HB2 H N N 347 LYS HB3 H N N 348 LYS HG2 H N N 349 LYS HG3 H N N 350 LYS HD2 H N N 351 LYS HD3 H N N 352 LYS HE2 H N N 353 LYS HE3 H N N 354 LYS HZ1 H N N 355 LYS HZ2 H N N 356 LYS HZ3 H N N 357 LYS HXT H N N 358 MET N N N N 359 MET CA C N S 360 MET C C N N 361 MET O O N N 362 MET CB C N N 363 MET CG C N N 364 MET SD S N N 365 MET CE C N N 366 MET OXT O N N 367 MET H H N N 368 MET H2 H N N 369 MET HA H N N 370 MET HB2 H N N 371 MET HB3 H N N 372 MET HG2 H N N 373 MET HG3 H N N 374 MET HE1 H N N 375 MET HE2 H N N 376 MET HE3 H N N 377 MET HXT H N N 378 PRO N N N N 379 PRO CA C N S 380 PRO C C N N 381 PRO O O N N 382 PRO CB C N N 383 PRO CG C N N 384 PRO CD C N N 385 PRO OXT O N N 386 PRO H H N N 387 PRO HA H N N 388 PRO HB2 H N N 389 PRO HB3 H N N 390 PRO HG2 H N N 391 PRO HG3 H N N 392 PRO HD2 H N N 393 PRO HD3 H N N 394 PRO HXT H N N 395 SER N N N N 396 SER CA C N S 397 SER C C N N 398 SER O O N N 399 SER CB C N N 400 SER OG O N N 401 SER OXT O N N 402 SER H H N N 403 SER H2 H N N 404 SER HA H N N 405 SER HB2 H N N 406 SER HB3 H N N 407 SER HG H N N 408 SER HXT H N N 409 THR N N N N 410 THR CA C N S 411 THR C C N N 412 THR O O N N 413 THR CB C N R 414 THR OG1 O N N 415 THR CG2 C N N 416 THR OXT O N N 417 THR H H N N 418 THR H2 H N N 419 THR HA H N N 420 THR HB H N N 421 THR HG1 H N N 422 THR HG21 H N N 423 THR HG22 H N N 424 THR HG23 H N N 425 THR HXT H N N 426 TYR N N N N 427 TYR CA C N S 428 TYR C C N N 429 TYR O O N N 430 TYR CB C N N 431 TYR CG C Y N 432 TYR CD1 C Y N 433 TYR CD2 C Y N 434 TYR CE1 C Y N 435 TYR CE2 C Y N 436 TYR CZ C Y N 437 TYR OH O N N 438 TYR OXT O N N 439 TYR H H N N 440 TYR H2 H N N 441 TYR HA H N N 442 TYR HB2 H N N 443 TYR HB3 H N N 444 TYR HD1 H N N 445 TYR HD2 H N N 446 TYR HE1 H N N 447 TYR HE2 H N N 448 TYR HH H N N 449 TYR HXT H N N 450 VAL N N N N 451 VAL CA C N S 452 VAL C C N N 453 VAL O O N N 454 VAL CB C N N 455 VAL CG1 C N N 456 VAL CG2 C N N 457 VAL OXT O N N 458 VAL H H N N 459 VAL H2 H N N 460 VAL HA H N N 461 VAL HB H N N 462 VAL HG11 H N N 463 VAL HG12 H N N 464 VAL HG13 H N N 465 VAL HG21 H N N 466 VAL HG22 H N N 467 VAL HG23 H N N 468 VAL HXT H N N 469 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 GLN N CA sing N N 219 GLN N H sing N N 220 GLN N H2 sing N N 221 GLN CA C sing N N 222 GLN CA CB sing N N 223 GLN CA HA sing N N 224 GLN C O doub N N 225 GLN C OXT sing N N 226 GLN CB CG sing N N 227 GLN CB HB2 sing N N 228 GLN CB HB3 sing N N 229 GLN CG CD sing N N 230 GLN CG HG2 sing N N 231 GLN CG HG3 sing N N 232 GLN CD OE1 doub N N 233 GLN CD NE2 sing N N 234 GLN NE2 HE21 sing N N 235 GLN NE2 HE22 sing N N 236 GLN OXT HXT sing N N 237 GLU N CA sing N N 238 GLU N H sing N N 239 GLU N H2 sing N N 240 GLU CA C sing N N 241 GLU CA CB sing N N 242 GLU CA HA sing N N 243 GLU C O doub N N 244 GLU C OXT sing N N 245 GLU CB CG sing N N 246 GLU CB HB2 sing N N 247 GLU CB HB3 sing N N 248 GLU CG CD sing N N 249 GLU CG HG2 sing N N 250 GLU CG HG3 sing N N 251 GLU CD OE1 doub N N 252 GLU CD OE2 sing N N 253 GLU OE2 HE2 sing N N 254 GLU OXT HXT sing N N 255 GLY N CA sing N N 256 GLY N H sing N N 257 GLY N H2 sing N N 258 GLY CA C sing N N 259 GLY CA HA2 sing N N 260 GLY CA HA3 sing N N 261 GLY C O doub N N 262 GLY C OXT sing N N 263 GLY OXT HXT sing N N 264 HIS N CA sing N N 265 HIS N H sing N N 266 HIS N H2 sing N N 267 HIS CA C sing N N 268 HIS CA CB sing N N 269 HIS CA HA sing N N 270 HIS C O doub N N 271 HIS C OXT sing N N 272 HIS CB CG sing N N 273 HIS CB HB2 sing N N 274 HIS CB HB3 sing N N 275 HIS CG ND1 sing Y N 276 HIS CG CD2 doub Y N 277 HIS ND1 CE1 doub Y N 278 HIS ND1 HD1 sing N N 279 HIS CD2 NE2 sing Y N 280 HIS CD2 HD2 sing N N 281 HIS CE1 NE2 sing Y N 282 HIS CE1 HE1 sing N N 283 HIS NE2 HE2 sing N N 284 HIS OXT HXT sing N N 285 HOH O H1 sing N N 286 HOH O H2 sing N N 287 ILE N CA sing N N 288 ILE N H sing N N 289 ILE N H2 sing N N 290 ILE CA C sing N N 291 ILE CA CB sing N N 292 ILE CA HA sing N N 293 ILE C O doub N N 294 ILE C OXT sing N N 295 ILE CB CG1 sing N N 296 ILE CB CG2 sing N N 297 ILE CB HB sing N N 298 ILE CG1 CD1 sing N N 299 ILE CG1 HG12 sing N N 300 ILE CG1 HG13 sing N N 301 ILE CG2 HG21 sing N N 302 ILE CG2 HG22 sing N N 303 ILE CG2 HG23 sing N N 304 ILE CD1 HD11 sing N N 305 ILE CD1 HD12 sing N N 306 ILE CD1 HD13 sing N N 307 ILE OXT HXT sing N N 308 LEU N CA sing N N 309 LEU N H sing N N 310 LEU N H2 sing N N 311 LEU CA C sing N N 312 LEU CA CB sing N N 313 LEU CA HA sing N N 314 LEU C O doub N N 315 LEU C OXT sing N N 316 LEU CB CG sing N N 317 LEU CB HB2 sing N N 318 LEU CB HB3 sing N N 319 LEU CG CD1 sing N N 320 LEU CG CD2 sing N N 321 LEU CG HG sing N N 322 LEU CD1 HD11 sing N N 323 LEU CD1 HD12 sing N N 324 LEU CD1 HD13 sing N N 325 LEU CD2 HD21 sing N N 326 LEU CD2 HD22 sing N N 327 LEU CD2 HD23 sing N N 328 LEU OXT HXT sing N N 329 LYS N CA sing N N 330 LYS N H sing N N 331 LYS N H2 sing N N 332 LYS CA C sing N N 333 LYS CA CB sing N N 334 LYS CA HA sing N N 335 LYS C O doub N N 336 LYS C OXT sing N N 337 LYS CB CG sing N N 338 LYS CB HB2 sing N N 339 LYS CB HB3 sing N N 340 LYS CG CD sing N N 341 LYS CG HG2 sing N N 342 LYS CG HG3 sing N N 343 LYS CD CE sing N N 344 LYS CD HD2 sing N N 345 LYS CD HD3 sing N N 346 LYS CE NZ sing N N 347 LYS CE HE2 sing N N 348 LYS CE HE3 sing N N 349 LYS NZ HZ1 sing N N 350 LYS NZ HZ2 sing N N 351 LYS NZ HZ3 sing N N 352 LYS OXT HXT sing N N 353 MET N CA sing N N 354 MET N H sing N N 355 MET N H2 sing N N 356 MET CA C sing N N 357 MET CA CB sing N N 358 MET CA HA sing N N 359 MET C O doub N N 360 MET C OXT sing N N 361 MET CB CG sing N N 362 MET CB HB2 sing N N 363 MET CB HB3 sing N N 364 MET CG SD sing N N 365 MET CG HG2 sing N N 366 MET CG HG3 sing N N 367 MET SD CE sing N N 368 MET CE HE1 sing N N 369 MET CE HE2 sing N N 370 MET CE HE3 sing N N 371 MET OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 VAL N CA sing N N 443 VAL N H sing N N 444 VAL N H2 sing N N 445 VAL CA C sing N N 446 VAL CA CB sing N N 447 VAL CA HA sing N N 448 VAL C O doub N N 449 VAL C OXT sing N N 450 VAL CB CG1 sing N N 451 VAL CB CG2 sing N N 452 VAL CB HB sing N N 453 VAL CG1 HG11 sing N N 454 VAL CG1 HG12 sing N N 455 VAL CG1 HG13 sing N N 456 VAL CG2 HG21 sing N N 457 VAL CG2 HG22 sing N N 458 VAL CG2 HG23 sing N N 459 VAL OXT HXT sing N N 460 # _ndb_struct_conf_na.entry_id 2DGC _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 19 8_775 -0.412 -0.637 0.001 -1.072 -7.222 -0.816 1 B_DG-9:DC9_B B -9 ? B 9 ? 19 1 1 A DG 3 1_555 A DC 18 8_775 -0.503 -0.656 0.155 4.147 1.692 -5.297 2 B_DG-8:DC8_B B -8 ? B 8 ? 19 1 1 A DA 4 1_555 A DT 17 8_775 0.064 -0.506 0.010 0.148 -9.951 0.184 3 B_DA-7:DT7_B B -7 ? B 7 ? 20 1 1 A DG 5 1_555 A DC 16 8_775 -0.245 -0.270 -0.258 -0.393 -13.066 1.894 4 B_DG-6:DC6_B B -6 ? B 6 ? 19 1 1 A DA 6 1_555 A DT 15 8_775 0.300 -0.175 0.236 -2.346 -10.316 6.510 5 B_DA-5:DT5_B B -5 ? B 5 ? 20 1 1 A DT 7 1_555 A DA 14 8_775 0.098 -0.367 0.516 1.580 -10.495 1.592 6 B_DT-4:DA4_B B -4 ? B 4 ? 20 1 1 A DG 8 1_555 A DC 13 8_775 -0.184 -0.231 -0.008 -3.513 -10.423 -0.715 7 B_DG-3:DC3_B B -3 ? B 3 ? 19 1 1 A DA 9 1_555 A DT 12 8_775 -0.260 -0.201 -0.182 3.660 -8.678 0.658 8 B_DA-2:DT2_B B -2 ? B 2 ? 20 1 1 A DC 10 1_555 A DG 11 8_775 0.295 -0.093 0.072 -4.747 -12.407 1.330 9 B_DC-1:DG1_B B -1 ? B 1 ? 19 1 1 A DG 11 1_555 A DC 10 8_775 -0.295 -0.093 0.072 4.747 -12.407 1.330 10 B_DG1:DC-1_B B 1 ? B -1 ? 19 1 1 A DT 12 1_555 A DA 9 8_775 0.260 -0.201 -0.182 -3.660 -8.678 0.658 11 B_DT2:DA-2_B B 2 ? B -2 ? 20 1 1 A DC 13 1_555 A DG 8 8_775 0.184 -0.231 -0.008 3.513 -10.423 -0.715 12 B_DC3:DG-3_B B 3 ? B -3 ? 19 1 1 A DA 14 1_555 A DT 7 8_775 -0.098 -0.367 0.516 -1.580 -10.495 1.592 13 B_DA4:DT-4_B B 4 ? B -4 ? 20 1 1 A DT 15 1_555 A DA 6 8_775 -0.300 -0.175 0.236 2.346 -10.316 6.510 14 B_DT5:DA-5_B B 5 ? B -5 ? 20 1 1 A DC 16 1_555 A DG 5 8_775 0.245 -0.270 -0.258 0.393 -13.066 1.894 15 B_DC6:DG-6_B B 6 ? B -6 ? 19 1 1 A DT 17 1_555 A DA 4 8_775 -0.064 -0.506 0.010 -0.148 -9.951 0.184 16 B_DT7:DA-7_B B 7 ? B -7 ? 20 1 1 A DC 18 1_555 A DG 3 8_775 0.503 -0.656 0.155 -4.147 1.692 -5.297 17 B_DC8:DG-8_B B 8 ? B -8 ? 19 1 1 A DC 19 1_555 A DG 2 8_775 0.412 -0.637 0.001 1.072 -7.222 -0.816 18 B_DC9:DG-9_B B 9 ? B -9 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 19 8_775 A DG 3 1_555 A DC 18 8_775 0.070 0.251 3.278 -0.381 0.536 30.346 0.372 -0.210 3.281 1.023 0.727 30.353 1 BB_DG-9DG-8:DC8DC9_BB B -9 ? B 9 ? B -8 ? B 8 ? 1 A DG 3 1_555 A DC 18 8_775 A DA 4 1_555 A DT 17 8_775 -0.308 0.217 3.595 1.081 4.914 40.082 -0.294 0.580 3.586 7.136 -1.570 40.384 2 BB_DG-8DA-7:DT7DC8_BB B -8 ? B 8 ? B -7 ? B 7 ? 1 A DA 4 1_555 A DT 17 8_775 A DG 5 1_555 A DC 16 8_775 0.014 -0.143 3.497 1.915 5.290 28.312 -1.542 0.427 3.408 10.682 -3.867 28.855 3 BB_DA-7DG-6:DC6DT7_BB B -7 ? B 7 ? B -6 ? B 6 ? 1 A DG 5 1_555 A DC 16 8_775 A DA 6 1_555 A DT 15 8_775 -0.022 -0.074 3.245 -6.943 5.045 43.921 -0.554 -0.601 3.186 6.670 9.178 44.711 4 BB_DG-6DA-5:DT5DC6_BB B -6 ? B 6 ? B -5 ? B 5 ? 1 A DA 6 1_555 A DT 15 8_775 A DT 7 1_555 A DA 14 8_775 -0.366 -0.677 3.387 -2.923 -4.370 25.326 -0.226 -0.044 3.471 -9.832 6.576 25.857 5 BB_DA-5DT-4:DA4DT5_BB B -5 ? B 5 ? B -4 ? B 4 ? 1 A DT 7 1_555 A DA 14 8_775 A DG 8 1_555 A DC 13 8_775 -0.590 0.199 3.380 1.684 7.565 40.123 -0.576 1.037 3.335 10.904 -2.427 40.835 6 BB_DT-4DG-3:DC3DA4_BB B -4 ? B 4 ? B -3 ? B 3 ? 1 A DG 8 1_555 A DC 13 8_775 A DA 9 1_555 A DT 12 8_775 0.091 -0.072 3.119 0.321 6.942 33.019 -1.197 -0.107 3.042 12.048 -0.558 33.722 7 BB_DG-3DA-2:DT2DC3_BB B -3 ? B 3 ? B -2 ? B 2 ? 1 A DA 9 1_555 A DT 12 8_775 A DC 10 1_555 A DG 11 8_775 0.086 -0.619 3.627 -3.048 1.147 34.856 -1.221 -0.650 3.585 1.910 5.075 35.003 8 BB_DA-2DC-1:DG1DT2_BB B -2 ? B 2 ? B -1 ? B 1 ? 1 A DC 10 1_555 A DG 11 8_775 A DG 11 1_555 A DC 10 8_775 0.000 0.449 3.209 0.000 11.432 28.629 -1.410 0.000 3.152 22.041 0.000 30.783 9 BB_DC-1DG1:DC-1DG1_BB B -1 ? B 1 ? B 1 ? B -1 ? 1 A DG 11 1_555 A DC 10 8_775 A DT 12 1_555 A DA 9 8_775 -0.086 -0.619 3.627 3.048 1.147 34.856 -1.221 0.650 3.585 1.910 -5.075 35.003 10 BB_DG1DT2:DA-2DC-1_BB B 1 ? B -1 ? B 2 ? B -2 ? 1 A DT 12 1_555 A DA 9 8_775 A DC 13 1_555 A DG 8 8_775 -0.091 -0.072 3.119 -0.322 6.942 33.019 -1.197 0.107 3.042 12.048 0.558 33.722 11 BB_DT2DC3:DG-3DA-2_BB B 2 ? B -2 ? B 3 ? B -3 ? 1 A DC 13 1_555 A DG 8 8_775 A DA 14 1_555 A DT 7 8_775 0.590 0.199 3.380 -1.684 7.565 40.123 -0.576 -1.037 3.335 10.904 2.427 40.835 12 BB_DC3DA4:DT-4DG-3_BB B 3 ? B -3 ? B 4 ? B -4 ? 1 A DA 14 1_555 A DT 7 8_775 A DT 15 1_555 A DA 6 8_775 0.366 -0.677 3.387 2.923 -4.370 25.326 -0.226 0.044 3.471 -9.832 -6.576 25.857 13 BB_DA4DT5:DA-5DT-4_BB B 4 ? B -4 ? B 5 ? B -5 ? 1 A DT 15 1_555 A DA 6 8_775 A DC 16 1_555 A DG 5 8_775 0.022 -0.074 3.245 6.943 5.045 43.921 -0.554 0.601 3.186 6.670 -9.178 44.711 14 BB_DT5DC6:DG-6DA-5_BB B 5 ? B -5 ? B 6 ? B -6 ? 1 A DC 16 1_555 A DG 5 8_775 A DT 17 1_555 A DA 4 8_775 -0.014 -0.143 3.497 -1.915 5.290 28.312 -1.542 -0.427 3.408 10.682 3.867 28.855 15 BB_DC6DT7:DA-7DG-6_BB B 6 ? B -6 ? B 7 ? B -7 ? 1 A DT 17 1_555 A DA 4 8_775 A DC 18 1_555 A DG 3 8_775 0.308 0.217 3.595 -1.081 4.914 40.082 -0.294 -0.580 3.586 7.136 1.570 40.384 16 BB_DT7DC8:DG-8DA-7_BB B 7 ? B -7 ? B 8 ? B -8 ? 1 A DC 18 1_555 A DG 3 8_775 A DC 19 1_555 A DG 2 8_775 -0.070 0.251 3.278 0.381 0.536 30.346 0.372 0.210 3.281 1.023 -0.727 30.353 17 BB_DC8DC9:DG-9DG-8_BB B 8 ? B -8 ? B 9 ? B -9 ? # _atom_sites.entry_id 2DGC _atom_sites.fract_transf_matrix[1][1] 0.017047 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017047 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011510 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_