HEADER CELL ADHESION 14-MAR-06 2DGJ TITLE CRYSTAL STRUCTURE OF EBHA (756-1003 DOMAIN) FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN EBHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-249; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MU50; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS HELIX-BUNDLE, ROD-LIKE STRUCTURE, ADHESIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.TANAKA,M.YAO,M.KURODA,N.WATANABE,T.OHTA,I.TANAKA REVDAT 3 13-JUL-11 2DGJ 1 VERSN REVDAT 2 13-MAY-08 2DGJ 1 JRNL REMARK VERSN REVDAT 1 20-MAR-07 2DGJ 0 JRNL AUTH Y.TANAKA,S.SAKAMOTO,M.KURODA,S.GODA,Y.-G.GAO,K.TSUMOTO, JRNL AUTH 2 Y.HIRAGI,M.YAO,N.WATANABE,T.OHTA,I.TANAKA JRNL TITL A HELICAL STRING OF ALTERNATELY CONNECTED THREE-HELIX JRNL TITL 2 BUNDLES FOR THE CELL WALL-ASSOCIATED ADHESION PROTEIN EBH JRNL TITL 3 FROM STAPHYLOCOCCUS AUREUS JRNL REF STRUCTURE V. 16 488 2008 JRNL REFN ISSN 0969-2126 JRNL PMID 18334223 JRNL DOI 10.1016/J.STR.2007.12.018 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2600153.160 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 20173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2785 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 311 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.89000 REMARK 3 B22 (A**2) : -11.11000 REMARK 3 B33 (A**2) : 15.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.59 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.290 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.260 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.440 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 32.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.13100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, OASIS V. 2004, DM, SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACETATE, 2.3M AMMONIUM SULFATE, REMARK 280 PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.68300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.68300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 22.63250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 80.92400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 22.63250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 80.92400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.68300 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 22.63250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 80.92400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.68300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 22.63250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 80.92400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 22.63250 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 80.92400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.68300 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 50260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.68300 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -22.63250 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 80.92400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 22.63250 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 80.92400 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -66.68300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 48 REMARK 465 GLY A 49 REMARK 465 SER A 50 REMARK 465 ASN A 51 REMARK 465 SER A 52 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 MSE B 3 REMARK 465 GLY B 49 REMARK 465 SER B 50 REMARK 465 ASN B 51 REMARK 465 SER B 52 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 HIS B 257 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2075 O HOH A 2075 3654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 54 N - CA - C ANGL. DEV. = -19.4 DEGREES REMARK 500 PRO B 218 C - N - CA ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 54 -28.52 -147.67 REMARK 500 ASP B 138 30.93 -95.89 REMARK 500 PRO B 218 -16.88 -48.51 REMARK 500 LEU B 220 -154.25 -145.55 REMARK 500 LYS B 247 35.13 -75.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 54 45.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XVH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SAME PROTEIN BUT THE OTHER REGION DBREF 2DGJ A 2 249 UNP Q931R6 Q931R6_STAAM 756 1003 DBREF 2DGJ B 2 249 UNP Q931R6 Q931R6_STAAM 756 1003 SEQADV 2DGJ MSE A 1 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ LEU A 250 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ GLU A 251 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 252 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 253 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 254 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 255 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 256 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS A 257 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ MSE B 1 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ LEU B 250 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ GLU B 251 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 252 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 253 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 254 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 255 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 256 UNP Q931R6 EXPRESSION TAG SEQADV 2DGJ HIS B 257 UNP Q931R6 EXPRESSION TAG SEQRES 1 A 257 MSE ALA MSE GLY GLN LEU GLN HIS GLY ILE ASP ASP GLU SEQRES 2 A 257 ASN ALA THR LYS GLN THR GLN LYS TYR ARG ASP ALA GLU SEQRES 3 A 257 GLN SER LYS LYS THR ALA TYR ASP GLN ALA VAL ALA ALA SEQRES 4 A 257 ALA LYS ALA ILE LEU ASN LYS GLN THR GLY SER ASN SER SEQRES 5 A 257 ASP LYS ALA ALA VAL ASP ARG ALA LEU GLN GLN VAL THR SEQRES 6 A 257 SER THR LYS ASP ALA LEU ASN GLY ASP ALA LYS LEU ALA SEQRES 7 A 257 GLU ALA LYS ALA ALA ALA ARG GLN ASN LEU GLY THR LEU SEQRES 8 A 257 ASN HIS ILE THR ASN ALA GLN ARG THR ALA LEU GLU GLY SEQRES 9 A 257 GLN ILE ASN GLN ALA THR THR VAL ASP GLY VAL ASN THR SEQRES 10 A 257 VAL LYS THR ASN ALA ASN THR LEU ASP GLY ALA MSE ASN SEQRES 11 A 257 SER LEU GLN GLY ALA ILE ASN ASP LYS ASP ALA THR LEU SEQRES 12 A 257 ARG ASN GLN ASN TYR LEU ASP ALA ASP GLU SER LYS ARG SEQRES 13 A 257 ASN ALA TYR THR GLN ALA VAL THR ALA ALA GLU GLY ILE SEQRES 14 A 257 LEU ASN LYS GLN THR GLY GLY ASN THR SER LYS ALA ASP SEQRES 15 A 257 VAL ASP ASN ALA LEU ASN ALA VAL THR ARG ALA LYS ALA SEQRES 16 A 257 ALA LEU ASN GLY ALA GLU ASN LEU ARG ASN ALA LYS THR SEQRES 17 A 257 SER ALA THR ASN THR ILE ASN GLY LEU PRO ASN LEU THR SEQRES 18 A 257 GLN LEU GLN LYS ASP ASN LEU LYS HIS GLN VAL GLU GLN SEQRES 19 A 257 ALA GLN ASN VAL VAL GLY VAL ASN GLY VAL LYS ASP LYS SEQRES 20 A 257 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 257 MSE ALA MSE GLY GLN LEU GLN HIS GLY ILE ASP ASP GLU SEQRES 2 B 257 ASN ALA THR LYS GLN THR GLN LYS TYR ARG ASP ALA GLU SEQRES 3 B 257 GLN SER LYS LYS THR ALA TYR ASP GLN ALA VAL ALA ALA SEQRES 4 B 257 ALA LYS ALA ILE LEU ASN LYS GLN THR GLY SER ASN SER SEQRES 5 B 257 ASP LYS ALA ALA VAL ASP ARG ALA LEU GLN GLN VAL THR SEQRES 6 B 257 SER THR LYS ASP ALA LEU ASN GLY ASP ALA LYS LEU ALA SEQRES 7 B 257 GLU ALA LYS ALA ALA ALA ARG GLN ASN LEU GLY THR LEU SEQRES 8 B 257 ASN HIS ILE THR ASN ALA GLN ARG THR ALA LEU GLU GLY SEQRES 9 B 257 GLN ILE ASN GLN ALA THR THR VAL ASP GLY VAL ASN THR SEQRES 10 B 257 VAL LYS THR ASN ALA ASN THR LEU ASP GLY ALA MSE ASN SEQRES 11 B 257 SER LEU GLN GLY ALA ILE ASN ASP LYS ASP ALA THR LEU SEQRES 12 B 257 ARG ASN GLN ASN TYR LEU ASP ALA ASP GLU SER LYS ARG SEQRES 13 B 257 ASN ALA TYR THR GLN ALA VAL THR ALA ALA GLU GLY ILE SEQRES 14 B 257 LEU ASN LYS GLN THR GLY GLY ASN THR SER LYS ALA ASP SEQRES 15 B 257 VAL ASP ASN ALA LEU ASN ALA VAL THR ARG ALA LYS ALA SEQRES 16 B 257 ALA LEU ASN GLY ALA GLU ASN LEU ARG ASN ALA LYS THR SEQRES 17 B 257 SER ALA THR ASN THR ILE ASN GLY LEU PRO ASN LEU THR SEQRES 18 B 257 GLN LEU GLN LYS ASP ASN LEU LYS HIS GLN VAL GLU GLN SEQRES 19 B 257 ALA GLN ASN VAL VAL GLY VAL ASN GLY VAL LYS ASP LYS SEQRES 20 B 257 GLY ASN LEU GLU HIS HIS HIS HIS HIS HIS MODRES 2DGJ MSE A 3 MET SELENOMETHIONINE MODRES 2DGJ MSE A 129 MET SELENOMETHIONINE MODRES 2DGJ MSE B 129 MET SELENOMETHIONINE HET MSE A 3 8 HET MSE A 129 8 HET MSE B 129 8 HET SO4 A2002 5 HET SO4 B2001 5 HET ACY A1501 4 HET GOL B1001 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 ACY C2 H4 O2 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *280(H2 O) HELIX 1 1 ALA A 2 ASP A 12 1 11 HELIX 2 2 ASP A 12 THR A 19 1 8 HELIX 3 3 THR A 19 ASP A 24 1 6 HELIX 4 4 GLU A 26 GLN A 47 1 22 HELIX 5 5 LYS A 54 LEU A 71 1 18 HELIX 6 6 ASN A 72 GLY A 89 1 18 HELIX 7 7 THR A 95 ALA A 109 1 15 HELIX 8 8 THR A 111 ILE A 136 1 26 HELIX 9 9 ASP A 138 ASN A 145 1 8 HELIX 10 10 ASN A 145 ASP A 150 1 6 HELIX 11 11 ASP A 152 ASN A 171 1 20 HELIX 12 12 SER A 179 ALA A 195 1 17 HELIX 13 13 ASN A 198 GLY A 216 1 19 HELIX 14 14 THR A 221 ALA A 235 1 15 HELIX 15 15 ASN A 237 GLU A 251 1 15 HELIX 16 16 GLY B 4 ASP B 11 1 8 HELIX 17 17 GLU B 13 GLN B 18 1 6 HELIX 18 18 THR B 19 ASP B 24 1 6 HELIX 19 19 GLU B 26 LYS B 46 1 21 HELIX 20 20 ASP B 53 LEU B 71 1 19 HELIX 21 21 ASN B 72 GLY B 89 1 18 HELIX 22 22 THR B 95 ALA B 109 1 15 HELIX 23 23 THR B 111 ILE B 136 1 26 HELIX 24 24 ASP B 138 ARG B 144 1 7 HELIX 25 25 ASN B 145 ASP B 150 1 6 HELIX 26 26 ASP B 152 ASN B 171 1 20 HELIX 27 27 SER B 179 LEU B 197 1 19 HELIX 28 28 ASN B 198 LEU B 217 1 20 HELIX 29 29 LYS B 225 ALA B 235 1 11 HELIX 30 30 ASN B 237 ASP B 246 1 10 LINK C ALA A 2 N MSE A 3 1555 1555 1.33 LINK C MSE A 3 N GLY A 4 1555 1555 1.33 LINK C ALA A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N ASN A 130 1555 1555 1.33 LINK C ALA B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N ASN B 130 1555 1555 1.33 SITE 1 AC1 4 ALA A 109 THR A 110 THR A 111 HOH A2096 SITE 1 AC2 6 ASN A 219 HIS A 252 THR B 110 THR B 111 SITE 2 AC2 6 GLY B 114 HOH B2030 SITE 1 AC3 3 LYS A 81 ARG A 85 HOH A2138 SITE 1 AC4 3 ALA B 78 LYS B 81 ARG B 85 CRYST1 45.265 161.848 133.366 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006179 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007498 0.00000