data_2DGO # _entry.id 2DGO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGO pdb_00002dgo 10.2210/pdb2dgo/pdb RCSB RCSB025396 ? ? WWPDB D_1000025396 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000372.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGO _pdbx_database_status.recvd_initial_deposition_date 2006-03-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the RNA binding domain in cytotoxic granule-associated RNA binding protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cytotoxic granule-associated RNA binding protein 1' _entity.formula_weight 12432.717 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ WLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ WLGGRQIRTNWATRKPPAPKSTYESNTKQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008000372.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 LYS n 1 10 LYS n 1 11 ASP n 1 12 THR n 1 13 SER n 1 14 ASN n 1 15 HIS n 1 16 PHE n 1 17 HIS n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 GLY n 1 22 ASP n 1 23 LEU n 1 24 SER n 1 25 PRO n 1 26 GLU n 1 27 ILE n 1 28 THR n 1 29 THR n 1 30 GLU n 1 31 ASP n 1 32 ILE n 1 33 LYS n 1 34 ALA n 1 35 ALA n 1 36 PHE n 1 37 ALA n 1 38 PRO n 1 39 PHE n 1 40 GLY n 1 41 ARG n 1 42 ILE n 1 43 SER n 1 44 ASP n 1 45 ALA n 1 46 ARG n 1 47 VAL n 1 48 VAL n 1 49 LYS n 1 50 ASP n 1 51 MET n 1 52 ALA n 1 53 THR n 1 54 GLY n 1 55 LYS n 1 56 SER n 1 57 LYS n 1 58 GLY n 1 59 TYR n 1 60 GLY n 1 61 PHE n 1 62 VAL n 1 63 SER n 1 64 PHE n 1 65 PHE n 1 66 ASN n 1 67 LYS n 1 68 TRP n 1 69 ASP n 1 70 ALA n 1 71 GLU n 1 72 ASN n 1 73 ALA n 1 74 ILE n 1 75 GLN n 1 76 GLN n 1 77 MET n 1 78 GLY n 1 79 GLY n 1 80 GLN n 1 81 TRP n 1 82 LEU n 1 83 GLY n 1 84 GLY n 1 85 ARG n 1 86 GLN n 1 87 ILE n 1 88 ARG n 1 89 THR n 1 90 ASN n 1 91 TRP n 1 92 ALA n 1 93 THR n 1 94 ARG n 1 95 LYS n 1 96 PRO n 1 97 PRO n 1 98 ALA n 1 99 PRO n 1 100 LYS n 1 101 SER n 1 102 THR n 1 103 TYR n 1 104 GLU n 1 105 SER n 1 106 ASN n 1 107 THR n 1 108 LYS n 1 109 GLN n 1 110 SER n 1 111 GLY n 1 112 PRO n 1 113 SER n 1 114 SER n 1 115 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Tia1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050425-20 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIA1_MOUSE _struct_ref.pdbx_db_accession P52912 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 105 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52912 _struct_ref_seq.db_align_beg 105 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 199 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 70 _struct_ref_seq.pdbx_auth_seq_align_end 171 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGO GLY A 1 ? UNP P52912 ? ? 'cloning artifact' 63 1 1 2DGO SER A 2 ? UNP P52912 ? ? 'cloning artifact' 64 2 1 2DGO SER A 3 ? UNP P52912 ? ? 'cloning artifact' 65 3 1 2DGO GLY A 4 ? UNP P52912 ? ? 'cloning artifact' 66 4 1 2DGO SER A 5 ? UNP P52912 ? ? 'cloning artifact' 67 5 1 2DGO SER A 6 ? UNP P52912 ? ? 'cloning artifact' 68 6 1 2DGO GLY A 7 ? UNP P52912 ? ? 'cloning artifact' 69 7 1 2DGO SER A 110 ? UNP P52912 ? ? 'cloning artifact' 172 8 1 2DGO GLY A 111 ? UNP P52912 ? ? 'cloning artifact' 173 9 1 2DGO PRO A 112 ? UNP P52912 ? ? 'cloning artifact' 174 10 1 2DGO SER A 113 ? UNP P52912 ? ? 'cloning artifact' 175 11 1 2DGO SER A 114 ? UNP P52912 ? ? 'cloning artifact' 176 12 1 2DGO GLY A 115 ? UNP P52912 ? ? 'cloning artifact' 177 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGO _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGO _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGO _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.932 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2DGO _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGO _struct.title 'Solution structure of the RNA binding domain in cytotoxic granule-associated RNA binding protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGO _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? ALA A 37 ? THR A 90 ALA A 99 1 ? 10 HELX_P HELX_P2 2 PRO A 38 ? GLY A 40 ? PRO A 100 GLY A 102 5 ? 3 HELX_P HELX_P3 3 ASN A 66 ? MET A 77 ? ASN A 128 MET A 139 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 42 ? LYS A 49 ? ILE A 104 LYS A 111 A 2 SER A 56 ? PHE A 64 ? SER A 118 PHE A 126 A 3 PHE A 16 ? GLY A 21 ? PHE A 78 GLY A 83 A 4 ARG A 88 ? TRP A 91 ? ARG A 150 TRP A 153 B 1 TRP A 81 ? LEU A 82 ? TRP A 143 LEU A 144 B 2 ARG A 85 ? GLN A 86 ? ARG A 147 GLN A 148 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 44 ? N ASP A 106 O SER A 63 ? O SER A 125 A 2 3 O GLY A 60 ? O GLY A 122 N VAL A 20 ? N VAL A 82 A 3 4 N PHE A 19 ? N PHE A 81 O ASN A 90 ? O ASN A 152 B 1 2 N LEU A 82 ? N LEU A 144 O ARG A 85 ? O ARG A 147 # _database_PDB_matrix.entry_id 2DGO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 63 63 GLY GLY A . n A 1 2 SER 2 64 64 SER SER A . n A 1 3 SER 3 65 65 SER SER A . n A 1 4 GLY 4 66 66 GLY GLY A . n A 1 5 SER 5 67 67 SER SER A . n A 1 6 SER 6 68 68 SER SER A . n A 1 7 GLY 7 69 69 GLY GLY A . n A 1 8 GLN 8 70 70 GLN GLN A . n A 1 9 LYS 9 71 71 LYS LYS A . n A 1 10 LYS 10 72 72 LYS LYS A . n A 1 11 ASP 11 73 73 ASP ASP A . n A 1 12 THR 12 74 74 THR THR A . n A 1 13 SER 13 75 75 SER SER A . n A 1 14 ASN 14 76 76 ASN ASN A . n A 1 15 HIS 15 77 77 HIS HIS A . n A 1 16 PHE 16 78 78 PHE PHE A . n A 1 17 HIS 17 79 79 HIS HIS A . n A 1 18 VAL 18 80 80 VAL VAL A . n A 1 19 PHE 19 81 81 PHE PHE A . n A 1 20 VAL 20 82 82 VAL VAL A . n A 1 21 GLY 21 83 83 GLY GLY A . n A 1 22 ASP 22 84 84 ASP ASP A . n A 1 23 LEU 23 85 85 LEU LEU A . n A 1 24 SER 24 86 86 SER SER A . n A 1 25 PRO 25 87 87 PRO PRO A . n A 1 26 GLU 26 88 88 GLU GLU A . n A 1 27 ILE 27 89 89 ILE ILE A . n A 1 28 THR 28 90 90 THR THR A . n A 1 29 THR 29 91 91 THR THR A . n A 1 30 GLU 30 92 92 GLU GLU A . n A 1 31 ASP 31 93 93 ASP ASP A . n A 1 32 ILE 32 94 94 ILE ILE A . n A 1 33 LYS 33 95 95 LYS LYS A . n A 1 34 ALA 34 96 96 ALA ALA A . n A 1 35 ALA 35 97 97 ALA ALA A . n A 1 36 PHE 36 98 98 PHE PHE A . n A 1 37 ALA 37 99 99 ALA ALA A . n A 1 38 PRO 38 100 100 PRO PRO A . n A 1 39 PHE 39 101 101 PHE PHE A . n A 1 40 GLY 40 102 102 GLY GLY A . n A 1 41 ARG 41 103 103 ARG ARG A . n A 1 42 ILE 42 104 104 ILE ILE A . n A 1 43 SER 43 105 105 SER SER A . n A 1 44 ASP 44 106 106 ASP ASP A . n A 1 45 ALA 45 107 107 ALA ALA A . n A 1 46 ARG 46 108 108 ARG ARG A . n A 1 47 VAL 47 109 109 VAL VAL A . n A 1 48 VAL 48 110 110 VAL VAL A . n A 1 49 LYS 49 111 111 LYS LYS A . n A 1 50 ASP 50 112 112 ASP ASP A . n A 1 51 MET 51 113 113 MET MET A . n A 1 52 ALA 52 114 114 ALA ALA A . n A 1 53 THR 53 115 115 THR THR A . n A 1 54 GLY 54 116 116 GLY GLY A . n A 1 55 LYS 55 117 117 LYS LYS A . n A 1 56 SER 56 118 118 SER SER A . n A 1 57 LYS 57 119 119 LYS LYS A . n A 1 58 GLY 58 120 120 GLY GLY A . n A 1 59 TYR 59 121 121 TYR TYR A . n A 1 60 GLY 60 122 122 GLY GLY A . n A 1 61 PHE 61 123 123 PHE PHE A . n A 1 62 VAL 62 124 124 VAL VAL A . n A 1 63 SER 63 125 125 SER SER A . n A 1 64 PHE 64 126 126 PHE PHE A . n A 1 65 PHE 65 127 127 PHE PHE A . n A 1 66 ASN 66 128 128 ASN ASN A . n A 1 67 LYS 67 129 129 LYS LYS A . n A 1 68 TRP 68 130 130 TRP TRP A . n A 1 69 ASP 69 131 131 ASP ASP A . n A 1 70 ALA 70 132 132 ALA ALA A . n A 1 71 GLU 71 133 133 GLU GLU A . n A 1 72 ASN 72 134 134 ASN ASN A . n A 1 73 ALA 73 135 135 ALA ALA A . n A 1 74 ILE 74 136 136 ILE ILE A . n A 1 75 GLN 75 137 137 GLN GLN A . n A 1 76 GLN 76 138 138 GLN GLN A . n A 1 77 MET 77 139 139 MET MET A . n A 1 78 GLY 78 140 140 GLY GLY A . n A 1 79 GLY 79 141 141 GLY GLY A . n A 1 80 GLN 80 142 142 GLN GLN A . n A 1 81 TRP 81 143 143 TRP TRP A . n A 1 82 LEU 82 144 144 LEU LEU A . n A 1 83 GLY 83 145 145 GLY GLY A . n A 1 84 GLY 84 146 146 GLY GLY A . n A 1 85 ARG 85 147 147 ARG ARG A . n A 1 86 GLN 86 148 148 GLN GLN A . n A 1 87 ILE 87 149 149 ILE ILE A . n A 1 88 ARG 88 150 150 ARG ARG A . n A 1 89 THR 89 151 151 THR THR A . n A 1 90 ASN 90 152 152 ASN ASN A . n A 1 91 TRP 91 153 153 TRP TRP A . n A 1 92 ALA 92 154 154 ALA ALA A . n A 1 93 THR 93 155 155 THR THR A . n A 1 94 ARG 94 156 156 ARG ARG A . n A 1 95 LYS 95 157 157 LYS LYS A . n A 1 96 PRO 96 158 158 PRO PRO A . n A 1 97 PRO 97 159 159 PRO PRO A . n A 1 98 ALA 98 160 160 ALA ALA A . n A 1 99 PRO 99 161 161 PRO PRO A . n A 1 100 LYS 100 162 162 LYS LYS A . n A 1 101 SER 101 163 163 SER SER A . n A 1 102 THR 102 164 164 THR THR A . n A 1 103 TYR 103 165 165 TYR TYR A . n A 1 104 GLU 104 166 166 GLU GLU A . n A 1 105 SER 105 167 167 SER SER A . n A 1 106 ASN 106 168 168 ASN ASN A . n A 1 107 THR 107 169 169 THR THR A . n A 1 108 LYS 108 170 170 LYS LYS A . n A 1 109 GLN 109 171 171 GLN GLN A . n A 1 110 SER 110 172 172 SER SER A . n A 1 111 GLY 111 173 173 GLY GLY A . n A 1 112 PRO 112 174 174 PRO PRO A . n A 1 113 SER 113 175 175 SER SER A . n A 1 114 SER 114 176 176 SER SER A . n A 1 115 GLY 115 177 177 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 65 ? ? -52.24 106.41 2 1 GLN A 70 ? ? -57.18 91.77 3 1 ASP A 73 ? ? -115.10 73.91 4 1 THR A 74 ? ? 36.63 45.43 5 1 ASN A 76 ? ? -98.72 50.13 6 1 SER A 105 ? ? -103.28 -64.53 7 1 ILE A 136 ? ? -38.60 -34.45 8 2 THR A 74 ? ? -104.39 46.58 9 2 ASN A 76 ? ? -104.98 47.44 10 2 SER A 105 ? ? -109.68 -63.73 11 2 SER A 118 ? ? -51.80 105.64 12 2 PRO A 159 ? ? -69.77 -176.29 13 2 TYR A 165 ? ? -173.79 143.02 14 3 ASP A 73 ? ? -107.05 43.75 15 3 THR A 74 ? ? 35.80 45.30 16 3 ASN A 76 ? ? -109.03 54.65 17 3 SER A 105 ? ? -107.33 -61.83 18 3 ASP A 131 ? ? -35.80 -39.11 19 3 ILE A 136 ? ? -38.76 -36.40 20 3 GLU A 166 ? ? -171.94 145.51 21 4 ASN A 76 ? ? -113.02 51.96 22 4 SER A 105 ? ? -106.73 -62.91 23 4 ALA A 154 ? ? -85.67 41.58 24 4 LYS A 162 ? ? -37.43 108.36 25 4 SER A 175 ? ? -170.60 122.61 26 5 LYS A 72 ? ? -96.33 43.21 27 5 PRO A 161 ? ? -69.75 93.99 28 5 SER A 167 ? ? -107.27 43.04 29 6 SER A 65 ? ? -90.38 -61.70 30 6 LYS A 72 ? ? -174.93 133.89 31 6 THR A 74 ? ? 35.22 53.26 32 6 ASN A 76 ? ? -110.33 50.38 33 6 SER A 118 ? ? -51.77 109.03 34 6 ASN A 168 ? ? -173.65 129.24 35 7 SER A 64 ? ? 34.60 42.16 36 7 GLN A 70 ? ? -50.78 170.03 37 7 SER A 105 ? ? -109.86 -60.76 38 7 ILE A 136 ? ? -37.76 -35.32 39 7 GLN A 142 ? ? -56.64 -177.26 40 7 ASN A 168 ? ? -59.27 170.61 41 8 SER A 65 ? ? -36.71 115.89 42 8 SER A 105 ? ? -102.50 -61.98 43 8 GLN A 142 ? ? -55.01 179.88 44 8 PRO A 161 ? ? -69.76 98.26 45 9 THR A 74 ? ? -90.93 39.72 46 9 SER A 118 ? ? -54.92 102.09 47 9 ASN A 168 ? ? -165.88 118.82 48 10 SER A 67 ? ? -123.45 -50.51 49 10 LYS A 72 ? ? -80.19 49.40 50 10 ASP A 73 ? ? -94.91 33.99 51 10 THR A 74 ? ? -64.54 75.74 52 10 ILE A 136 ? ? -37.67 -37.74 53 10 GLN A 142 ? ? -49.41 179.82 54 10 THR A 155 ? ? -42.36 160.28 55 10 SER A 163 ? ? -173.75 122.05 56 10 TYR A 165 ? ? -168.65 110.88 57 11 GLN A 70 ? ? -62.60 97.46 58 11 ASN A 76 ? ? -99.20 41.56 59 11 SER A 105 ? ? -105.10 -62.30 60 11 ILE A 136 ? ? -38.62 -36.57 61 11 GLN A 142 ? ? -50.63 178.89 62 11 PRO A 174 ? ? -69.75 -171.68 63 12 LYS A 71 ? ? -51.05 170.59 64 12 THR A 74 ? ? -119.17 78.70 65 12 SER A 105 ? ? -107.61 -62.72 66 12 ILE A 136 ? ? -39.20 -33.46 67 12 GLN A 142 ? ? -49.33 173.22 68 12 ARG A 156 ? ? -174.28 119.92 69 12 TYR A 165 ? ? -69.29 -177.99 70 12 GLU A 166 ? ? -174.67 135.77 71 13 LYS A 72 ? ? -87.16 44.86 72 13 ASP A 84 ? ? 72.43 38.92 73 13 SER A 105 ? ? -104.02 -65.10 74 13 SER A 118 ? ? -50.38 108.30 75 13 GLN A 148 ? ? -59.68 173.37 76 13 TRP A 153 ? ? -54.77 104.50 77 13 THR A 164 ? ? -171.35 139.31 78 13 TYR A 165 ? ? -169.52 119.13 79 13 SER A 175 ? ? 72.05 51.01 80 14 SER A 75 ? ? -97.98 -60.53 81 14 ASN A 76 ? ? -104.68 41.46 82 14 ASP A 131 ? ? -35.91 -39.91 83 14 ILE A 136 ? ? -38.92 -30.41 84 14 ALA A 160 ? ? -49.27 150.88 85 14 GLU A 166 ? ? -57.56 99.87 86 14 SER A 175 ? ? 35.19 39.75 87 15 ASP A 73 ? ? -45.81 155.87 88 15 THR A 115 ? ? -131.14 -34.28 89 15 ILE A 136 ? ? -37.01 -36.76 90 15 SER A 167 ? ? -171.78 131.37 91 15 SER A 176 ? ? -165.72 106.89 92 16 LYS A 71 ? ? -91.00 53.68 93 16 SER A 105 ? ? -107.33 -62.94 94 16 SER A 118 ? ? -37.70 111.76 95 16 ILE A 136 ? ? -38.73 -35.50 96 16 THR A 155 ? ? 34.95 41.42 97 16 ALA A 160 ? ? -46.07 161.65 98 16 GLU A 166 ? ? -172.05 147.05 99 16 THR A 169 ? ? -172.88 141.52 100 16 LYS A 170 ? ? -170.68 136.12 101 16 SER A 175 ? ? -36.71 137.37 102 17 ILE A 136 ? ? -38.17 -35.82 103 17 GLN A 142 ? ? -56.55 -179.92 104 17 PRO A 159 ? ? -69.72 -172.09 105 17 LYS A 162 ? ? -174.95 147.78 106 17 SER A 175 ? ? -173.92 124.06 107 18 SER A 64 ? ? -64.84 98.66 108 18 SER A 68 ? ? -166.47 115.54 109 18 ILE A 136 ? ? -38.44 -36.37 110 18 ARG A 156 ? ? -116.50 50.17 111 18 PRO A 159 ? ? -69.82 -174.45 112 18 TYR A 165 ? ? -39.15 157.91 113 18 PRO A 174 ? ? -69.81 97.55 114 19 THR A 74 ? ? -106.37 43.06 115 19 ASN A 76 ? ? -105.55 46.56 116 19 PRO A 174 ? ? -69.73 95.66 117 19 SER A 175 ? ? -43.09 166.60 118 19 SER A 176 ? ? -121.22 -54.61 119 20 ASN A 76 ? ? -108.33 42.02 120 20 ILE A 136 ? ? -39.83 -37.35 121 20 GLN A 142 ? ? -67.69 -177.94 122 20 THR A 164 ? ? -39.75 136.60 123 20 PRO A 174 ? ? -69.80 97.35 124 20 SER A 176 ? ? -125.96 -61.02 #