HEADER RNA BINDING PROTEIN 15-MAR-06 2DGQ TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN IN BRUNO-LIKE TITLE 2 6 RNA-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRUNO-LIKE 6, RNA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRUNOL6; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050801-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DGQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DGQ 1 VERSN REVDAT 1 15-SEP-06 2DGQ 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN IN JRNL TITL 2 BRUNO-LIKE 6 RNA-BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025398. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 45 177.62 -59.93 REMARK 500 1 PRO A 54 -167.53 -69.78 REMARK 500 1 ASP A 80 179.72 -52.57 REMARK 500 1 HIS A 86 110.88 -38.92 REMARK 500 1 HIS A 108 107.21 -48.63 REMARK 500 1 PRO A 124 84.39 -69.83 REMARK 500 1 ALA A 125 91.38 -48.03 REMARK 500 1 SER A 127 50.08 34.87 REMARK 500 2 GLU A 74 137.45 -170.48 REMARK 500 2 HIS A 108 108.35 -42.25 REMARK 500 2 GLN A 110 -44.80 -131.49 REMARK 500 2 PRO A 124 88.18 -69.72 REMARK 500 3 SER A 36 103.53 -35.76 REMARK 500 3 PRO A 54 -165.60 -69.72 REMARK 500 3 GLU A 74 117.89 -163.99 REMARK 500 3 ASP A 80 177.43 -53.43 REMARK 500 3 HIS A 86 100.50 -40.19 REMARK 500 3 HIS A 108 107.15 -50.54 REMARK 500 3 LEU A 113 155.43 -46.79 REMARK 500 3 PRO A 124 86.62 -69.76 REMARK 500 3 ALA A 125 130.11 -34.73 REMARK 500 3 GLU A 128 115.98 -161.47 REMARK 500 3 SER A 133 134.66 -38.33 REMARK 500 4 PRO A 54 -164.99 -69.79 REMARK 500 4 HIS A 86 99.02 -34.85 REMARK 500 4 HIS A 108 109.45 -45.69 REMARK 500 4 GLN A 110 -44.31 -130.78 REMARK 500 4 PRO A 119 -166.32 -69.75 REMARK 500 4 PRO A 124 88.15 -69.71 REMARK 500 4 ALA A 126 -71.02 -37.59 REMARK 500 5 PRO A 54 -173.37 -69.70 REMARK 500 5 GLU A 74 136.71 -173.86 REMARK 500 5 GLN A 110 -44.94 -130.34 REMARK 500 5 PRO A 119 -177.73 -69.79 REMARK 500 5 PRO A 124 84.64 -69.77 REMARK 500 5 ALA A 125 132.72 -37.12 REMARK 500 5 SER A 133 110.11 -168.21 REMARK 500 6 PRO A 54 -164.15 -69.74 REMARK 500 6 HIS A 86 105.76 -35.32 REMARK 500 6 HIS A 108 108.74 -44.64 REMARK 500 6 PRO A 124 96.66 -69.84 REMARK 500 7 PRO A 54 -164.39 -69.75 REMARK 500 7 HIS A 86 100.52 -54.80 REMARK 500 7 GLN A 110 -45.04 -130.39 REMARK 500 7 LEU A 113 155.81 -42.38 REMARK 500 7 PRO A 119 -171.84 -69.76 REMARK 500 7 PRO A 124 80.57 -69.80 REMARK 500 7 SER A 136 105.22 -59.92 REMARK 500 8 SER A 33 170.19 -56.40 REMARK 500 8 ALA A 45 -177.48 -59.05 REMARK 500 REMARK 500 THIS ENTRY HAS 159 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001437.1 RELATED DB: TARGETDB DBREF 2DGQ A 38 132 UNP Q8N607 Q8N607_HUMAN 38 132 SEQADV 2DGQ GLY A 31 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 32 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 33 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ GLY A 34 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 35 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 36 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ GLY A 37 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 133 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ GLY A 134 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ PRO A 135 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 136 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ SER A 137 UNP Q8N607 CLONING ARTIFACT SEQADV 2DGQ GLY A 138 UNP Q8N607 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY VAL PRO MET LYS ASP HIS SEQRES 2 A 108 ASP ALA ILE LYS LEU PHE VAL GLY GLN ILE PRO ARG GLY SEQRES 3 A 108 LEU ASP GLU GLN ASP LEU LYS PRO LEU PHE GLU GLU PHE SEQRES 4 A 108 GLY ARG ILE TYR GLU LEU THR VAL LEU LYS ASP ARG LEU SEQRES 5 A 108 THR GLY LEU HIS LYS GLY CYS ALA PHE LEU THR TYR CYS SEQRES 6 A 108 ALA ARG ASP SER ALA LEU LYS ALA GLN SER ALA LEU HIS SEQRES 7 A 108 GLU GLN LYS THR LEU PRO GLY MET ASN ARG PRO ILE GLN SEQRES 8 A 108 VAL LYS PRO ALA ALA SER GLU GLY ARG GLY GLU SER GLY SEQRES 9 A 108 PRO SER SER GLY HELIX 1 1 ASP A 58 GLU A 67 1 10 HELIX 2 2 ALA A 96 HIS A 108 1 13 SHEET 1 A 4 ILE A 72 LYS A 79 0 SHEET 2 A 4 HIS A 86 TYR A 94 -1 O PHE A 91 N THR A 76 SHEET 3 A 4 LYS A 47 VAL A 50 -1 N LEU A 48 O LEU A 92 SHEET 4 A 4 VAL A 122 PRO A 124 -1 O LYS A 123 N PHE A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1