data_2DGR # _entry.id 2DGR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGR pdb_00002dgr 10.2210/pdb2dgr/pdb RCSB RCSB025399 ? ? WWPDB D_1000025399 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002002000.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGR _pdbx_database_status.recvd_initial_deposition_date 2006-03-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the second KH domain in ring finger and KH domain containing protein 1' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Terada, T.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'RING finger and KH domain-containing protein 1' _entity.formula_weight 8855.992 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'K homology domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRSGP SSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRSGP SSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002002000.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLY n 1 9 GLN n 1 10 THR n 1 11 THR n 1 12 ILE n 1 13 GLN n 1 14 VAL n 1 15 ARG n 1 16 VAL n 1 17 PRO n 1 18 TYR n 1 19 ARG n 1 20 VAL n 1 21 VAL n 1 22 GLY n 1 23 LEU n 1 24 VAL n 1 25 VAL n 1 26 GLY n 1 27 PRO n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 THR n 1 32 ILE n 1 33 LYS n 1 34 ARG n 1 35 ILE n 1 36 GLN n 1 37 GLN n 1 38 ARG n 1 39 THR n 1 40 HIS n 1 41 THR n 1 42 TYR n 1 43 ILE n 1 44 VAL n 1 45 THR n 1 46 PRO n 1 47 GLY n 1 48 ARG n 1 49 ASP n 1 50 LYS n 1 51 GLU n 1 52 PRO n 1 53 VAL n 1 54 PHE n 1 55 ALA n 1 56 VAL n 1 57 THR n 1 58 GLY n 1 59 MET n 1 60 PRO n 1 61 GLU n 1 62 ASN n 1 63 VAL n 1 64 ASP n 1 65 ARG n 1 66 ALA n 1 67 ARG n 1 68 GLU n 1 69 GLU n 1 70 ILE n 1 71 GLU n 1 72 ALA n 1 73 HIS n 1 74 ILE n 1 75 THR n 1 76 LEU n 1 77 ARG n 1 78 SER n 1 79 GLY n 1 80 PRO n 1 81 SER n 1 82 SER n 1 83 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RKHD1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-12 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RKHD1_HUMAN _struct_ref.pdbx_db_accession Q86XN8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 106 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 77 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q86XN8 _struct_ref_seq.db_align_beg 106 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 177 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 106 _struct_ref_seq.pdbx_auth_seq_align_end 175 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGR GLY A 1 ? UNP Q86XN8 ? ? 'cloning artifact' 99 1 1 2DGR SER A 2 ? UNP Q86XN8 ? ? 'cloning artifact' 100 2 1 2DGR SER A 3 ? UNP Q86XN8 ? ? 'cloning artifact' 101 3 1 2DGR GLY A 4 ? UNP Q86XN8 ? ? 'cloning artifact' 102 4 1 2DGR SER A 5 ? UNP Q86XN8 ? ? 'cloning artifact' 103 5 1 2DGR SER A 6 ? UNP Q86XN8 ? ? 'cloning artifact' 104 6 1 2DGR GLY A 7 ? UNP Q86XN8 ? ? 'cloning artifact' 105 7 1 2DGR SER A 78 ? UNP Q86XN8 ? ? 'cloning artifact' 176 8 1 2DGR GLY A 79 ? UNP Q86XN8 ? ? 'cloning artifact' 177 9 1 2DGR PRO A 80 ? UNP Q86XN8 ? ? 'cloning artifact' 178 10 1 2DGR SER A 81 ? UNP Q86XN8 ? ? 'cloning artifact' 179 11 1 2DGR SER A 82 ? UNP Q86XN8 ? ? 'cloning artifact' 180 12 1 2DGR GLY A 83 ? UNP Q86XN8 ? ? 'cloning artifact' 181 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGR _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGR _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGR _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.932 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2DGR _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGR _struct.title 'Solution structure of the second KH domain in ring finger and KH domain containing protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGR _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;KH domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 17 ? GLY A 26 ? PRO A 115 GLY A 124 1 ? 10 HELX_P HELX_P2 2 THR A 31 ? THR A 39 ? THR A 129 THR A 137 1 ? 9 HELX_P HELX_P3 3 ASN A 62 ? LEU A 76 ? ASN A 160 LEU A 174 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 10 ? ARG A 15 ? THR A 108 ARG A 113 A 2 VAL A 53 ? GLY A 58 ? VAL A 151 GLY A 156 A 3 TYR A 42 ? VAL A 44 ? TYR A 140 VAL A 142 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 10 ? N THR A 108 O GLY A 58 ? O GLY A 156 A 2 3 O ALA A 55 ? O ALA A 153 N VAL A 44 ? N VAL A 142 # _database_PDB_matrix.entry_id 2DGR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGR _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 99 99 GLY GLY A . n A 1 2 SER 2 100 100 SER SER A . n A 1 3 SER 3 101 101 SER SER A . n A 1 4 GLY 4 102 102 GLY GLY A . n A 1 5 SER 5 103 103 SER SER A . n A 1 6 SER 6 104 104 SER SER A . n A 1 7 GLY 7 105 105 GLY GLY A . n A 1 8 GLY 8 106 106 GLY GLY A . n A 1 9 GLN 9 107 107 GLN GLN A . n A 1 10 THR 10 108 108 THR THR A . n A 1 11 THR 11 109 109 THR THR A . n A 1 12 ILE 12 110 110 ILE ILE A . n A 1 13 GLN 13 111 111 GLN GLN A . n A 1 14 VAL 14 112 112 VAL VAL A . n A 1 15 ARG 15 113 113 ARG ARG A . n A 1 16 VAL 16 114 114 VAL VAL A . n A 1 17 PRO 17 115 115 PRO PRO A . n A 1 18 TYR 18 116 116 TYR TYR A . n A 1 19 ARG 19 117 117 ARG ARG A . n A 1 20 VAL 20 118 118 VAL VAL A . n A 1 21 VAL 21 119 119 VAL VAL A . n A 1 22 GLY 22 120 120 GLY GLY A . n A 1 23 LEU 23 121 121 LEU LEU A . n A 1 24 VAL 24 122 122 VAL VAL A . n A 1 25 VAL 25 123 123 VAL VAL A . n A 1 26 GLY 26 124 124 GLY GLY A . n A 1 27 PRO 27 125 125 PRO PRO A . n A 1 28 LYS 28 126 126 LYS LYS A . n A 1 29 GLY 29 127 127 GLY GLY A . n A 1 30 ALA 30 128 128 ALA ALA A . n A 1 31 THR 31 129 129 THR THR A . n A 1 32 ILE 32 130 130 ILE ILE A . n A 1 33 LYS 33 131 131 LYS LYS A . n A 1 34 ARG 34 132 132 ARG ARG A . n A 1 35 ILE 35 133 133 ILE ILE A . n A 1 36 GLN 36 134 134 GLN GLN A . n A 1 37 GLN 37 135 135 GLN GLN A . n A 1 38 ARG 38 136 136 ARG ARG A . n A 1 39 THR 39 137 137 THR THR A . n A 1 40 HIS 40 138 138 HIS HIS A . n A 1 41 THR 41 139 139 THR THR A . n A 1 42 TYR 42 140 140 TYR TYR A . n A 1 43 ILE 43 141 141 ILE ILE A . n A 1 44 VAL 44 142 142 VAL VAL A . n A 1 45 THR 45 143 143 THR THR A . n A 1 46 PRO 46 144 144 PRO PRO A . n A 1 47 GLY 47 145 145 GLY GLY A . n A 1 48 ARG 48 146 146 ARG ARG A . n A 1 49 ASP 49 147 147 ASP ASP A . n A 1 50 LYS 50 148 148 LYS LYS A . n A 1 51 GLU 51 149 149 GLU GLU A . n A 1 52 PRO 52 150 150 PRO PRO A . n A 1 53 VAL 53 151 151 VAL VAL A . n A 1 54 PHE 54 152 152 PHE PHE A . n A 1 55 ALA 55 153 153 ALA ALA A . n A 1 56 VAL 56 154 154 VAL VAL A . n A 1 57 THR 57 155 155 THR THR A . n A 1 58 GLY 58 156 156 GLY GLY A . n A 1 59 MET 59 157 157 MET MET A . n A 1 60 PRO 60 158 158 PRO PRO A . n A 1 61 GLU 61 159 159 GLU GLU A . n A 1 62 ASN 62 160 160 ASN ASN A . n A 1 63 VAL 63 161 161 VAL VAL A . n A 1 64 ASP 64 162 162 ASP ASP A . n A 1 65 ARG 65 163 163 ARG ARG A . n A 1 66 ALA 66 164 164 ALA ALA A . n A 1 67 ARG 67 165 165 ARG ARG A . n A 1 68 GLU 68 166 166 GLU GLU A . n A 1 69 GLU 69 167 167 GLU GLU A . n A 1 70 ILE 70 168 168 ILE ILE A . n A 1 71 GLU 71 169 169 GLU GLU A . n A 1 72 ALA 72 170 170 ALA ALA A . n A 1 73 HIS 73 171 171 HIS HIS A . n A 1 74 ILE 74 172 172 ILE ILE A . n A 1 75 THR 75 173 173 THR THR A . n A 1 76 LEU 76 174 174 LEU LEU A . n A 1 77 ARG 77 175 175 ARG ARG A . n A 1 78 SER 78 176 176 SER SER A . n A 1 79 GLY 79 177 177 GLY GLY A . n A 1 80 PRO 80 178 178 PRO PRO A . n A 1 81 SER 81 179 179 SER SER A . n A 1 82 SER 82 180 180 SER SER A . n A 1 83 GLY 83 181 181 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 107 ? ? -57.51 -178.02 2 1 VAL A 119 ? ? -39.30 -74.86 3 1 PRO A 125 ? ? -47.97 91.90 4 1 PRO A 144 ? ? -69.79 -179.78 5 1 PRO A 150 ? ? -69.74 99.25 6 2 SER A 103 ? ? -102.18 45.04 7 2 PRO A 125 ? ? -47.96 93.88 8 2 PRO A 144 ? ? -69.81 -178.27 9 2 ASP A 147 ? ? -105.54 42.24 10 2 PRO A 150 ? ? -69.78 82.78 11 2 MET A 157 ? ? -49.27 158.36 12 2 PRO A 158 ? ? -69.74 0.49 13 2 LEU A 174 ? ? -52.07 175.33 14 3 TYR A 116 ? ? -36.40 -35.53 15 3 PRO A 125 ? ? -47.93 100.66 16 3 PRO A 150 ? ? -69.80 96.78 17 3 MET A 157 ? ? -42.51 159.41 18 3 PRO A 158 ? ? -69.75 0.83 19 3 HIS A 171 ? ? -35.38 -34.62 20 3 THR A 173 ? ? -94.83 44.18 21 3 ARG A 175 ? ? -108.00 54.42 22 3 SER A 176 ? ? 34.41 42.66 23 3 SER A 180 ? ? -44.40 155.46 24 4 SER A 103 ? ? -45.35 100.73 25 4 TYR A 116 ? ? -35.26 -33.21 26 4 PRO A 125 ? ? -47.95 97.49 27 4 ASP A 147 ? ? -101.70 42.75 28 4 PRO A 150 ? ? -69.73 89.12 29 4 PRO A 158 ? ? -69.81 0.56 30 4 THR A 173 ? ? -93.95 42.10 31 4 PRO A 178 ? ? -69.76 2.70 32 4 SER A 179 ? ? -34.58 119.34 33 5 TYR A 116 ? ? -36.44 -33.40 34 5 PRO A 125 ? ? -47.96 105.47 35 5 ASP A 147 ? ? -102.02 43.81 36 5 PRO A 150 ? ? -69.80 91.38 37 5 MET A 157 ? ? -41.68 159.56 38 5 PRO A 158 ? ? -69.76 0.81 39 5 HIS A 171 ? ? -37.13 -38.94 40 6 TYR A 116 ? ? -36.59 -31.16 41 6 VAL A 119 ? ? -41.63 -70.68 42 6 PRO A 125 ? ? -48.04 99.65 43 6 ASP A 147 ? ? -103.22 41.74 44 6 MET A 157 ? ? -49.59 158.31 45 6 THR A 173 ? ? -87.34 37.05 46 7 TYR A 116 ? ? -34.52 -35.53 47 7 PRO A 125 ? ? -48.01 92.81 48 7 ASP A 147 ? ? -103.79 40.95 49 7 PRO A 150 ? ? -69.78 99.25 50 7 MET A 157 ? ? -43.49 159.44 51 8 TYR A 116 ? ? -34.84 -32.48 52 8 LYS A 126 ? ? 34.13 43.47 53 8 ALA A 128 ? ? -133.52 -34.37 54 8 MET A 157 ? ? -47.12 159.34 55 8 PRO A 158 ? ? -69.74 0.28 56 8 LEU A 174 ? ? -172.06 134.33 57 8 PRO A 178 ? ? -69.74 0.51 58 8 SER A 180 ? ? -37.77 110.81 59 9 PRO A 125 ? ? -47.98 105.74 60 9 ALA A 128 ? ? -134.87 -39.07 61 9 PRO A 150 ? ? -69.70 98.16 62 9 MET A 157 ? ? -48.56 159.32 63 9 SER A 176 ? ? -101.54 -60.29 64 9 SER A 179 ? ? -132.48 -61.40 65 10 TYR A 116 ? ? -35.85 -34.65 66 10 PRO A 125 ? ? -47.93 94.80 67 10 PRO A 150 ? ? -69.77 94.01 68 10 MET A 157 ? ? -46.57 159.28 69 10 PRO A 158 ? ? -69.78 0.85 70 10 HIS A 171 ? ? -34.45 -36.07 71 11 LYS A 126 ? ? 36.10 39.56 72 11 PRO A 144 ? ? -69.74 -179.11 73 11 PRO A 150 ? ? -69.76 89.66 74 11 MET A 157 ? ? -41.03 159.40 75 11 PRO A 158 ? ? -69.70 0.58 76 11 LEU A 174 ? ? -35.78 135.35 77 12 SER A 101 ? ? -56.39 172.76 78 12 VAL A 119 ? ? -46.50 -71.09 79 12 PRO A 125 ? ? -47.97 93.85 80 12 ASP A 147 ? ? -104.79 43.14 81 12 PRO A 150 ? ? -69.76 95.70 82 12 MET A 157 ? ? -45.37 158.94 83 13 SER A 103 ? ? -36.54 110.15 84 13 PRO A 125 ? ? -47.95 99.15 85 13 PRO A 150 ? ? -69.73 97.68 86 13 MET A 157 ? ? -39.20 159.49 87 13 PRO A 158 ? ? -69.76 0.87 88 13 THR A 173 ? ? -99.62 45.44 89 14 PRO A 125 ? ? -48.05 101.23 90 14 ASP A 147 ? ? -103.95 42.35 91 14 PRO A 158 ? ? -69.74 0.87 92 15 PRO A 125 ? ? -47.95 102.81 93 15 PRO A 144 ? ? -69.72 -175.59 94 15 PRO A 150 ? ? -69.81 91.15 95 15 MET A 157 ? ? -47.28 159.10 96 15 HIS A 171 ? ? -37.75 -37.91 97 15 PRO A 178 ? ? -69.73 91.95 98 15 SER A 180 ? ? 70.66 41.95 99 16 TYR A 116 ? ? -35.20 -32.82 100 16 VAL A 119 ? ? -42.66 -72.53 101 16 PRO A 125 ? ? -48.03 107.09 102 16 ASP A 147 ? ? -103.88 41.29 103 16 PRO A 150 ? ? -69.79 82.14 104 16 HIS A 171 ? ? -35.45 -37.91 105 16 PRO A 178 ? ? -69.82 0.28 106 16 SER A 179 ? ? -47.58 150.71 107 17 LYS A 126 ? ? 35.25 43.63 108 17 ASP A 147 ? ? -104.61 42.09 109 17 MET A 157 ? ? -44.56 159.46 110 17 PRO A 158 ? ? -69.77 0.75 111 17 THR A 173 ? ? -89.66 42.46 112 18 SER A 101 ? ? -48.51 152.84 113 18 SER A 103 ? ? -173.70 145.39 114 18 TYR A 116 ? ? -39.56 -27.34 115 18 PRO A 125 ? ? -48.00 88.85 116 18 PRO A 144 ? ? -69.78 -177.28 117 18 ASP A 147 ? ? -100.77 40.08 118 18 PRO A 150 ? ? -69.77 87.50 119 18 MET A 157 ? ? -43.03 159.55 120 18 PRO A 158 ? ? -69.79 0.69 121 18 SER A 180 ? ? 37.46 42.21 122 19 SER A 104 ? ? -83.64 41.79 123 19 PRO A 125 ? ? -47.93 97.37 124 19 ASP A 147 ? ? -99.92 43.42 125 19 MET A 157 ? ? -41.04 159.20 126 19 ILE A 168 ? ? -55.84 -70.55 127 19 LEU A 174 ? ? -34.56 151.23 128 19 SER A 176 ? ? -102.02 43.43 129 19 SER A 179 ? ? -38.29 141.98 130 20 TYR A 116 ? ? -39.47 -28.59 131 20 LYS A 126 ? ? 36.64 41.10 132 20 ASP A 147 ? ? -103.18 43.60 133 20 PRO A 150 ? ? -69.81 87.64 134 20 HIS A 171 ? ? -34.95 -38.77 135 20 THR A 173 ? ? -81.32 46.32 #