HEADER RNA BINDING PROTEIN 15-MAR-06 2DGR TITLE SOLUTION STRUCTURE OF THE SECOND KH DOMAIN IN RING FINGER AND KH TITLE 2 DOMAIN CONTAINING PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER AND KH DOMAIN-CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: K HOMOLOGY DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RKHD1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-12; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS KH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DGR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DGR 1 VERSN REVDAT 1 15-SEP-06 2DGR 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.TERADA,T.KIGAWA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND KH DOMAIN IN RING FINGER JRNL TITL 2 AND KH DOMAIN CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025399. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 107 -178.02 -57.51 REMARK 500 1 VAL A 119 -74.86 -39.30 REMARK 500 1 PRO A 125 91.90 -47.97 REMARK 500 1 PRO A 144 -179.78 -69.79 REMARK 500 1 PRO A 150 99.25 -69.74 REMARK 500 2 SER A 103 45.04 -102.18 REMARK 500 2 PRO A 125 93.88 -47.96 REMARK 500 2 PRO A 144 -178.27 -69.81 REMARK 500 2 ASP A 147 42.24 -105.54 REMARK 500 2 PRO A 150 82.78 -69.78 REMARK 500 2 MET A 157 158.36 -49.27 REMARK 500 2 PRO A 158 0.49 -69.74 REMARK 500 2 LEU A 174 175.33 -52.07 REMARK 500 3 TYR A 116 -35.53 -36.40 REMARK 500 3 PRO A 125 100.66 -47.93 REMARK 500 3 PRO A 150 96.78 -69.80 REMARK 500 3 MET A 157 159.41 -42.51 REMARK 500 3 PRO A 158 0.83 -69.75 REMARK 500 3 HIS A 171 -34.62 -35.38 REMARK 500 3 THR A 173 44.18 -94.83 REMARK 500 3 ARG A 175 54.42 -108.00 REMARK 500 3 SER A 176 42.66 34.41 REMARK 500 3 SER A 180 155.46 -44.40 REMARK 500 4 SER A 103 100.73 -45.35 REMARK 500 4 TYR A 116 -33.21 -35.26 REMARK 500 4 PRO A 125 97.49 -47.95 REMARK 500 4 ASP A 147 42.75 -101.70 REMARK 500 4 PRO A 150 89.12 -69.73 REMARK 500 4 PRO A 158 0.56 -69.81 REMARK 500 4 THR A 173 42.10 -93.95 REMARK 500 4 PRO A 178 2.70 -69.76 REMARK 500 4 SER A 179 119.34 -34.58 REMARK 500 5 TYR A 116 -33.40 -36.44 REMARK 500 5 PRO A 125 105.47 -47.96 REMARK 500 5 ASP A 147 43.81 -102.02 REMARK 500 5 PRO A 150 91.38 -69.80 REMARK 500 5 MET A 157 159.56 -41.68 REMARK 500 5 PRO A 158 0.81 -69.76 REMARK 500 5 HIS A 171 -38.94 -37.13 REMARK 500 6 TYR A 116 -31.16 -36.59 REMARK 500 6 VAL A 119 -70.68 -41.63 REMARK 500 6 PRO A 125 99.65 -48.04 REMARK 500 6 ASP A 147 41.74 -103.22 REMARK 500 6 MET A 157 158.31 -49.59 REMARK 500 6 THR A 173 37.05 -87.34 REMARK 500 7 TYR A 116 -35.53 -34.52 REMARK 500 7 PRO A 125 92.81 -48.01 REMARK 500 7 ASP A 147 40.95 -103.79 REMARK 500 7 PRO A 150 99.25 -69.78 REMARK 500 7 MET A 157 159.44 -43.49 REMARK 500 REMARK 500 THIS ENTRY HAS 135 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002002000.1 RELATED DB: TARGETDB DBREF 2DGR A 106 175 UNP Q86XN8 RKHD1_HUMAN 106 177 SEQADV 2DGR GLY A 99 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 100 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 101 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR GLY A 102 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 103 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 104 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR GLY A 105 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 176 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR GLY A 177 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR PRO A 178 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 179 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR SER A 180 UNP Q86XN8 CLONING ARTIFACT SEQADV 2DGR GLY A 181 UNP Q86XN8 CLONING ARTIFACT SEQRES 1 A 83 GLY SER SER GLY SER SER GLY GLY GLN THR THR ILE GLN SEQRES 2 A 83 VAL ARG VAL PRO TYR ARG VAL VAL GLY LEU VAL VAL GLY SEQRES 3 A 83 PRO LYS GLY ALA THR ILE LYS ARG ILE GLN GLN ARG THR SEQRES 4 A 83 HIS THR TYR ILE VAL THR PRO GLY ARG ASP LYS GLU PRO SEQRES 5 A 83 VAL PHE ALA VAL THR GLY MET PRO GLU ASN VAL ASP ARG SEQRES 6 A 83 ALA ARG GLU GLU ILE GLU ALA HIS ILE THR LEU ARG SER SEQRES 7 A 83 GLY PRO SER SER GLY HELIX 1 1 PRO A 115 GLY A 124 1 10 HELIX 2 2 THR A 129 THR A 137 1 9 HELIX 3 3 ASN A 160 LEU A 174 1 15 SHEET 1 A 3 THR A 108 ARG A 113 0 SHEET 2 A 3 VAL A 151 GLY A 156 -1 O GLY A 156 N THR A 108 SHEET 3 A 3 TYR A 140 VAL A 142 -1 N VAL A 142 O ALA A 153 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1