HEADER RNA BINDING PROTEIN 15-MAR-06 2DGS TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN DAZ-ASSOCIATED TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DAZ-ASSOCIATED PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: DELETED IN AZOOSPERMIA-ASSOCIATED PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DAZAP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-03; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DGS 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DGS 1 VERSN REVDAT 1 15-SEP-06 2DGS 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.TERADA,T.KIGAWA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN JRNL TITL 2 DAZ-ASSOCIATED PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025400. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL (PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 113 38.74 -88.21 REMARK 500 1 GLU A 164 -37.70 -36.30 REMARK 500 1 HIS A 174 28.17 48.17 REMARK 500 1 SER A 199 -175.78 -172.05 REMARK 500 2 SER A 108 43.07 -105.45 REMARK 500 2 ASN A 113 34.60 -92.33 REMARK 500 2 ASN A 123 -62.02 -100.23 REMARK 500 2 CYS A 124 120.96 -37.62 REMARK 500 3 SER A 107 100.84 -57.37 REMARK 500 3 SER A 110 40.28 -92.99 REMARK 500 3 LYS A 111 108.99 -53.13 REMARK 500 3 ASN A 113 41.94 -82.63 REMARK 500 3 VAL A 138 109.99 -161.42 REMARK 500 3 SER A 196 143.78 -35.46 REMARK 500 4 SER A 110 109.87 -171.35 REMARK 500 4 HIS A 174 26.46 48.61 REMARK 500 4 ASP A 192 132.07 -38.47 REMARK 500 5 ASN A 113 48.19 -90.41 REMARK 500 5 PHE A 175 144.80 -172.37 REMARK 500 5 ARG A 191 125.24 -35.50 REMARK 500 5 PRO A 198 -177.87 -69.77 REMARK 500 6 PHE A 175 148.32 -171.87 REMARK 500 6 MET A 179 48.22 38.81 REMARK 500 6 LYS A 181 142.81 -175.13 REMARK 500 7 SER A 105 85.04 -69.02 REMARK 500 7 SER A 110 -62.97 -100.71 REMARK 500 7 ASN A 113 56.46 -104.11 REMARK 500 7 GLU A 164 -39.03 -35.17 REMARK 500 8 ASN A 113 34.20 -88.60 REMARK 500 8 ASN A 123 -62.86 -102.43 REMARK 500 8 CYS A 124 128.76 -34.38 REMARK 500 8 PHE A 175 134.72 -172.01 REMARK 500 8 LYS A 181 149.21 -174.15 REMARK 500 8 ASP A 192 75.71 -107.09 REMARK 500 9 ASN A 113 41.75 34.42 REMARK 500 9 GLU A 126 -70.17 -34.57 REMARK 500 10 SER A 110 115.06 -35.27 REMARK 500 10 LYS A 111 111.48 -39.34 REMARK 500 10 ARG A 191 39.66 34.30 REMARK 500 10 LYS A 194 136.85 -173.02 REMARK 500 11 LYS A 111 125.53 -39.39 REMARK 500 11 ASN A 113 42.51 -86.84 REMARK 500 11 ASN A 123 -64.22 -100.25 REMARK 500 11 CYS A 124 126.57 -35.13 REMARK 500 11 HIS A 174 25.22 49.31 REMARK 500 11 PHE A 175 145.99 -170.13 REMARK 500 11 SER A 193 168.35 -45.54 REMARK 500 11 PRO A 198 -168.67 -69.70 REMARK 500 11 SER A 200 -69.19 -99.47 REMARK 500 12 LYS A 194 152.97 -41.31 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012495.2 RELATED DB: TARGETDB DBREF 2DGS A 110 195 UNP Q96EP5 DAZP1_HUMAN 110 195 SEQADV 2DGS GLY A 103 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 104 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 105 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 106 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 107 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 108 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 109 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 196 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 197 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS PRO A 198 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 199 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS SER A 200 UNP Q96EP5 CLONING ARTIFACT SEQADV 2DGS GLY A 201 UNP Q96EP5 CLONING ARTIFACT SEQRES 1 A 99 GLY SER SER GLY SER SER GLY SER LYS SER ASN LYS ILE SEQRES 2 A 99 PHE VAL GLY GLY ILE PRO HIS ASN CYS GLY GLU THR GLU SEQRES 3 A 99 LEU ARG GLU TYR PHE LYS LYS PHE GLY VAL VAL THR GLU SEQRES 4 A 99 VAL VAL MET ILE TYR ASP ALA GLU LYS GLN ARG PRO ARG SEQRES 5 A 99 GLY PHE GLY PHE ILE THR PHE GLU ASP GLU GLN SER VAL SEQRES 6 A 99 ASP GLN ALA VAL ASN MET HIS PHE HIS ASP ILE MET GLY SEQRES 7 A 99 LYS LYS VAL GLU VAL LYS ARG ALA GLU PRO ARG ASP SER SEQRES 8 A 99 LYS SER SER GLY PRO SER SER GLY HELIX 1 1 GLY A 125 LYS A 134 1 10 HELIX 2 2 ASP A 163 HIS A 174 1 12 SHEET 1 A 4 VAL A 139 MET A 144 0 SHEET 2 A 4 PHE A 156 PHE A 161 -1 O THR A 160 N GLU A 141 SHEET 3 A 4 LYS A 114 GLY A 118 -1 N ILE A 115 O ILE A 159 SHEET 4 A 4 GLU A 184 ARG A 187 -1 O LYS A 186 N PHE A 116 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1