data_2DGU # _entry.id 2DGU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGU pdb_00002dgu 10.2210/pdb2dgu/pdb RCSB RCSB025402 ? ? WWPDB D_1000025402 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003000744.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGU _pdbx_database_status.recvd_initial_deposition_date 2006-03-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein Q' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Heterogeneous nuclear ribonucleoprotein Q' _entity.formula_weight 11422.991 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;hnRNP Q, hnRNP-Q, Synaptotagmin-binding, cytoplasmic RNA-interacting protein, Glycine- and tyrosine-rich RNA-binding protein, GRY-RBP, NS1-associated protein 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA KPPDQKRKERKAQRQAASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA KPPDQKRKERKAQRQAASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003000744.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ALA n 1 10 LYS n 1 11 VAL n 1 12 LYS n 1 13 VAL n 1 14 LEU n 1 15 PHE n 1 16 VAL n 1 17 ARG n 1 18 ASN n 1 19 LEU n 1 20 ALA n 1 21 ASN n 1 22 THR n 1 23 VAL n 1 24 THR n 1 25 GLU n 1 26 GLU n 1 27 ILE n 1 28 LEU n 1 29 GLU n 1 30 LYS n 1 31 ALA n 1 32 PHE n 1 33 SER n 1 34 GLN n 1 35 PHE n 1 36 GLY n 1 37 LYS n 1 38 LEU n 1 39 GLU n 1 40 ARG n 1 41 VAL n 1 42 LYS n 1 43 LYS n 1 44 LEU n 1 45 LYS n 1 46 ASP n 1 47 TYR n 1 48 ALA n 1 49 PHE n 1 50 ILE n 1 51 HIS n 1 52 PHE n 1 53 ASP n 1 54 GLU n 1 55 ARG n 1 56 ASP n 1 57 GLY n 1 58 ALA n 1 59 VAL n 1 60 LYS n 1 61 ALA n 1 62 MET n 1 63 GLU n 1 64 GLU n 1 65 MET n 1 66 ASN n 1 67 GLY n 1 68 LYS n 1 69 ASP n 1 70 LEU n 1 71 GLU n 1 72 GLY n 1 73 GLU n 1 74 ASN n 1 75 ILE n 1 76 GLU n 1 77 ILE n 1 78 VAL n 1 79 PHE n 1 80 ALA n 1 81 LYS n 1 82 PRO n 1 83 PRO n 1 84 ASP n 1 85 GLN n 1 86 LYS n 1 87 ARG n 1 88 LYS n 1 89 GLU n 1 90 ARG n 1 91 LYS n 1 92 ALA n 1 93 GLN n 1 94 ARG n 1 95 GLN n 1 96 ALA n 1 97 ALA n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene SYNCRIP _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051017-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNRPQ_HUMAN _struct_ref.pdbx_db_accession O60506 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR KERKAQRQAA ; _struct_ref.pdbx_align_begin 334 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60506 _struct_ref_seq.db_align_beg 334 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 423 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 334 _struct_ref_seq.pdbx_auth_seq_align_end 423 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGU GLY A 1 ? UNP O60506 ? ? 'cloning artifact' 327 1 1 2DGU SER A 2 ? UNP O60506 ? ? 'cloning artifact' 328 2 1 2DGU SER A 3 ? UNP O60506 ? ? 'cloning artifact' 329 3 1 2DGU GLY A 4 ? UNP O60506 ? ? 'cloning artifact' 330 4 1 2DGU SER A 5 ? UNP O60506 ? ? 'cloning artifact' 331 5 1 2DGU SER A 6 ? UNP O60506 ? ? 'cloning artifact' 332 6 1 2DGU GLY A 7 ? UNP O60506 ? ? 'cloning artifact' 333 7 1 2DGU SER A 98 ? UNP O60506 ? ? 'cloning artifact' 424 8 1 2DGU GLY A 99 ? UNP O60506 ? ? 'cloning artifact' 425 9 1 2DGU PRO A 100 ? UNP O60506 ? ? 'cloning artifact' 426 10 1 2DGU SER A 101 ? UNP O60506 ? ? 'cloning artifact' 427 11 1 2DGU SER A 102 ? UNP O60506 ? ? 'cloning artifact' 428 12 1 2DGU GLY A 103 ? UNP O60506 ? ? 'cloning artifact' 429 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGU _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.932 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2DGU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGU _struct.title 'Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein Q' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGU _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 24 ? GLY A 36 ? THR A 350 GLY A 362 1 ? 13 HELX_P HELX_P2 2 GLU A 54 ? ASN A 66 ? GLU A 380 ASN A 392 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 38 ? LYS A 43 ? LEU A 364 LYS A 369 A 2 ALA A 48 ? PHE A 52 ? ALA A 374 PHE A 378 A 3 LEU A 14 ? ARG A 17 ? LEU A 340 ARG A 343 A 4 GLU A 73 ? PHE A 79 ? GLU A 399 PHE A 405 A 5 LYS A 68 ? LEU A 70 ? LYS A 394 LEU A 396 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 39 ? N GLU A 365 O HIS A 51 ? O HIS A 377 A 2 3 O ALA A 48 ? O ALA A 374 N VAL A 16 ? N VAL A 342 A 3 4 N PHE A 15 ? N PHE A 341 O VAL A 78 ? O VAL A 404 A 4 5 O GLU A 73 ? O GLU A 399 N LEU A 70 ? N LEU A 396 # _database_PDB_matrix.entry_id 2DGU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 327 327 GLY GLY A . n A 1 2 SER 2 328 328 SER SER A . n A 1 3 SER 3 329 329 SER SER A . n A 1 4 GLY 4 330 330 GLY GLY A . n A 1 5 SER 5 331 331 SER SER A . n A 1 6 SER 6 332 332 SER SER A . n A 1 7 GLY 7 333 333 GLY GLY A . n A 1 8 MET 8 334 334 MET MET A . n A 1 9 ALA 9 335 335 ALA ALA A . n A 1 10 LYS 10 336 336 LYS LYS A . n A 1 11 VAL 11 337 337 VAL VAL A . n A 1 12 LYS 12 338 338 LYS LYS A . n A 1 13 VAL 13 339 339 VAL VAL A . n A 1 14 LEU 14 340 340 LEU LEU A . n A 1 15 PHE 15 341 341 PHE PHE A . n A 1 16 VAL 16 342 342 VAL VAL A . n A 1 17 ARG 17 343 343 ARG ARG A . n A 1 18 ASN 18 344 344 ASN ASN A . n A 1 19 LEU 19 345 345 LEU LEU A . n A 1 20 ALA 20 346 346 ALA ALA A . n A 1 21 ASN 21 347 347 ASN ASN A . n A 1 22 THR 22 348 348 THR THR A . n A 1 23 VAL 23 349 349 VAL VAL A . n A 1 24 THR 24 350 350 THR THR A . n A 1 25 GLU 25 351 351 GLU GLU A . n A 1 26 GLU 26 352 352 GLU GLU A . n A 1 27 ILE 27 353 353 ILE ILE A . n A 1 28 LEU 28 354 354 LEU LEU A . n A 1 29 GLU 29 355 355 GLU GLU A . n A 1 30 LYS 30 356 356 LYS LYS A . n A 1 31 ALA 31 357 357 ALA ALA A . n A 1 32 PHE 32 358 358 PHE PHE A . n A 1 33 SER 33 359 359 SER SER A . n A 1 34 GLN 34 360 360 GLN GLN A . n A 1 35 PHE 35 361 361 PHE PHE A . n A 1 36 GLY 36 362 362 GLY GLY A . n A 1 37 LYS 37 363 363 LYS LYS A . n A 1 38 LEU 38 364 364 LEU LEU A . n A 1 39 GLU 39 365 365 GLU GLU A . n A 1 40 ARG 40 366 366 ARG ARG A . n A 1 41 VAL 41 367 367 VAL VAL A . n A 1 42 LYS 42 368 368 LYS LYS A . n A 1 43 LYS 43 369 369 LYS LYS A . n A 1 44 LEU 44 370 370 LEU LEU A . n A 1 45 LYS 45 371 371 LYS LYS A . n A 1 46 ASP 46 372 372 ASP ASP A . n A 1 47 TYR 47 373 373 TYR TYR A . n A 1 48 ALA 48 374 374 ALA ALA A . n A 1 49 PHE 49 375 375 PHE PHE A . n A 1 50 ILE 50 376 376 ILE ILE A . n A 1 51 HIS 51 377 377 HIS HIS A . n A 1 52 PHE 52 378 378 PHE PHE A . n A 1 53 ASP 53 379 379 ASP ASP A . n A 1 54 GLU 54 380 380 GLU GLU A . n A 1 55 ARG 55 381 381 ARG ARG A . n A 1 56 ASP 56 382 382 ASP ASP A . n A 1 57 GLY 57 383 383 GLY GLY A . n A 1 58 ALA 58 384 384 ALA ALA A . n A 1 59 VAL 59 385 385 VAL VAL A . n A 1 60 LYS 60 386 386 LYS LYS A . n A 1 61 ALA 61 387 387 ALA ALA A . n A 1 62 MET 62 388 388 MET MET A . n A 1 63 GLU 63 389 389 GLU GLU A . n A 1 64 GLU 64 390 390 GLU GLU A . n A 1 65 MET 65 391 391 MET MET A . n A 1 66 ASN 66 392 392 ASN ASN A . n A 1 67 GLY 67 393 393 GLY GLY A . n A 1 68 LYS 68 394 394 LYS LYS A . n A 1 69 ASP 69 395 395 ASP ASP A . n A 1 70 LEU 70 396 396 LEU LEU A . n A 1 71 GLU 71 397 397 GLU GLU A . n A 1 72 GLY 72 398 398 GLY GLY A . n A 1 73 GLU 73 399 399 GLU GLU A . n A 1 74 ASN 74 400 400 ASN ASN A . n A 1 75 ILE 75 401 401 ILE ILE A . n A 1 76 GLU 76 402 402 GLU GLU A . n A 1 77 ILE 77 403 403 ILE ILE A . n A 1 78 VAL 78 404 404 VAL VAL A . n A 1 79 PHE 79 405 405 PHE PHE A . n A 1 80 ALA 80 406 406 ALA ALA A . n A 1 81 LYS 81 407 407 LYS LYS A . n A 1 82 PRO 82 408 408 PRO PRO A . n A 1 83 PRO 83 409 409 PRO PRO A . n A 1 84 ASP 84 410 410 ASP ASP A . n A 1 85 GLN 85 411 411 GLN GLN A . n A 1 86 LYS 86 412 412 LYS LYS A . n A 1 87 ARG 87 413 413 ARG ARG A . n A 1 88 LYS 88 414 414 LYS LYS A . n A 1 89 GLU 89 415 415 GLU GLU A . n A 1 90 ARG 90 416 416 ARG ARG A . n A 1 91 LYS 91 417 417 LYS LYS A . n A 1 92 ALA 92 418 418 ALA ALA A . n A 1 93 GLN 93 419 419 GLN GLN A . n A 1 94 ARG 94 420 420 ARG ARG A . n A 1 95 GLN 95 421 421 GLN GLN A . n A 1 96 ALA 96 422 422 ALA ALA A . n A 1 97 ALA 97 423 423 ALA ALA A . n A 1 98 SER 98 424 424 SER SER A . n A 1 99 GLY 99 425 425 GLY GLY A . n A 1 100 PRO 100 426 426 PRO PRO A . n A 1 101 SER 101 427 427 SER SER A . n A 1 102 SER 102 428 428 SER SER A . n A 1 103 GLY 103 429 429 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 328 ? ? -88.55 42.48 2 1 LYS A 336 ? ? -106.71 46.13 3 1 ASN A 344 ? ? 70.66 36.40 4 1 GLU A 355 ? ? -74.21 -71.19 5 1 GLN A 360 ? ? -37.67 -38.28 6 1 VAL A 385 ? ? -37.99 -37.75 7 1 ASN A 392 ? ? -38.05 107.72 8 1 PHE A 405 ? ? -51.67 106.49 9 1 PRO A 409 ? ? -69.78 90.84 10 1 GLU A 415 ? ? -170.31 136.95 11 1 ARG A 416 ? ? -164.46 110.74 12 2 LYS A 336 ? ? -86.32 36.08 13 2 ASN A 344 ? ? 70.73 39.61 14 2 GLN A 360 ? ? -38.84 -38.70 15 2 VAL A 385 ? ? -36.00 -35.35 16 2 ASN A 392 ? ? -34.12 116.61 17 3 ASN A 344 ? ? 72.22 54.35 18 3 GLN A 360 ? ? -35.20 -39.18 19 3 VAL A 385 ? ? -38.39 -38.63 20 3 ASN A 392 ? ? -34.29 101.73 21 3 PRO A 409 ? ? -69.79 -175.52 22 3 LYS A 412 ? ? -63.58 77.92 23 3 PRO A 426 ? ? -69.75 89.63 24 3 SER A 428 ? ? -171.11 148.01 25 4 LYS A 336 ? ? -100.29 42.74 26 4 ASN A 344 ? ? 73.23 52.38 27 4 ALA A 346 ? ? -54.58 -176.61 28 4 GLU A 355 ? ? -68.21 -73.48 29 4 GLN A 360 ? ? -38.68 -38.68 30 4 VAL A 385 ? ? -34.92 -36.87 31 4 ASN A 392 ? ? -35.09 92.91 32 4 ASN A 400 ? ? -69.38 95.88 33 4 PHE A 405 ? ? -54.71 108.70 34 4 SER A 427 ? ? -124.79 -60.88 35 5 LYS A 336 ? ? -107.94 42.11 36 5 ASN A 344 ? ? 73.46 43.85 37 5 ALA A 346 ? ? -49.40 178.84 38 5 GLN A 360 ? ? -34.28 -35.37 39 5 LYS A 371 ? ? -32.12 -72.04 40 5 VAL A 385 ? ? -35.39 -32.83 41 5 ARG A 413 ? ? -173.88 119.30 42 5 LYS A 414 ? ? -174.61 148.74 43 5 GLN A 421 ? ? -165.65 114.25 44 5 PRO A 426 ? ? -69.78 -174.17 45 6 SER A 329 ? ? -168.71 118.14 46 6 ASN A 344 ? ? 70.24 39.19 47 6 ALA A 346 ? ? -50.26 172.29 48 6 VAL A 385 ? ? -38.47 -39.87 49 6 ASN A 392 ? ? -36.68 97.58 50 6 LYS A 414 ? ? -170.18 143.78 51 6 GLU A 415 ? ? -163.74 117.93 52 6 ARG A 420 ? ? -165.73 105.63 53 6 SER A 427 ? ? 34.79 44.92 54 7 SER A 328 ? ? -164.50 114.42 55 7 LYS A 336 ? ? -69.90 83.91 56 7 ASN A 344 ? ? 74.76 52.82 57 7 GLN A 360 ? ? -36.57 -32.24 58 7 VAL A 385 ? ? -38.52 -35.03 59 7 ASN A 392 ? ? -37.19 92.95 60 7 ARG A 413 ? ? -160.33 106.17 61 7 LYS A 417 ? ? -172.15 135.63 62 7 GLN A 421 ? ? -172.72 139.74 63 8 ASN A 344 ? ? 74.59 49.99 64 8 ALA A 346 ? ? -53.06 -179.47 65 8 GLU A 355 ? ? -72.26 -70.09 66 8 LYS A 371 ? ? -32.90 -71.65 67 8 VAL A 385 ? ? -36.40 -36.04 68 8 ASN A 392 ? ? -34.00 93.40 69 8 PHE A 405 ? ? -52.49 108.73 70 8 ASP A 410 ? ? -61.83 92.73 71 8 LYS A 412 ? ? -38.11 151.18 72 8 LYS A 414 ? ? -170.35 138.03 73 8 ARG A 420 ? ? -166.74 119.16 74 8 ALA A 422 ? ? -174.89 112.29 75 8 PRO A 426 ? ? -69.71 -175.65 76 9 ASN A 344 ? ? 72.54 33.27 77 9 ALA A 346 ? ? -53.01 176.83 78 9 GLU A 355 ? ? -76.43 -71.49 79 9 GLN A 360 ? ? -39.46 -37.24 80 9 LYS A 371 ? ? -33.33 -73.64 81 9 VAL A 385 ? ? -36.72 -39.39 82 9 ASN A 392 ? ? -34.17 96.55 83 9 PRO A 426 ? ? -69.76 -174.89 84 9 SER A 427 ? ? -172.91 -176.62 85 9 SER A 428 ? ? -128.05 -53.82 86 10 LYS A 336 ? ? -101.95 79.11 87 10 ASN A 344 ? ? 73.20 54.34 88 10 VAL A 385 ? ? -36.82 -35.42 89 10 ASP A 395 ? ? -68.73 99.89 90 10 PHE A 405 ? ? -51.53 108.95 91 10 ARG A 420 ? ? -165.96 108.14 92 10 PRO A 426 ? ? -69.73 -172.69 93 11 ASN A 344 ? ? 72.70 37.45 94 11 SER A 359 ? ? -100.06 -61.84 95 11 GLN A 360 ? ? -37.68 -37.84 96 11 GLU A 365 ? ? -131.76 -44.02 97 11 VAL A 385 ? ? -37.44 -35.36 98 11 ASN A 392 ? ? -34.21 93.24 99 11 PRO A 409 ? ? -69.79 93.72 100 11 LYS A 412 ? ? -99.27 -64.82 101 11 ALA A 418 ? ? -172.23 120.29 102 11 PRO A 426 ? ? -69.71 -176.36 103 12 ASN A 344 ? ? 74.16 46.81 104 12 GLU A 355 ? ? -72.18 -74.13 105 12 VAL A 385 ? ? -36.46 -35.61 106 12 ASN A 392 ? ? -42.54 91.47 107 12 PHE A 405 ? ? -53.70 109.45 108 13 SER A 331 ? ? -39.36 105.23 109 13 SER A 332 ? ? -39.57 153.60 110 13 ASN A 344 ? ? 74.81 41.21 111 13 ALA A 346 ? ? -56.17 -177.46 112 13 GLN A 360 ? ? -39.65 -36.02 113 13 LYS A 371 ? ? -33.70 -70.81 114 13 VAL A 385 ? ? -37.90 -37.93 115 13 ASN A 392 ? ? -42.03 94.49 116 14 SER A 328 ? ? -109.82 -63.96 117 14 ALA A 335 ? ? 35.34 37.52 118 14 LYS A 336 ? ? 34.48 45.77 119 14 ALA A 346 ? ? -46.26 173.04 120 14 PHE A 361 ? ? -75.43 -73.92 121 14 VAL A 385 ? ? -38.16 -39.66 122 14 GLN A 421 ? ? -174.09 118.99 123 14 PRO A 426 ? ? -69.81 -178.45 124 14 SER A 428 ? ? -38.25 154.34 125 15 ASN A 344 ? ? 72.91 39.12 126 15 GLN A 360 ? ? -37.96 -31.38 127 15 VAL A 385 ? ? -37.08 -35.18 128 15 ASN A 392 ? ? -34.35 93.11 129 15 LYS A 414 ? ? -170.63 139.91 130 16 MET A 334 ? ? -106.57 41.33 131 16 ALA A 346 ? ? -69.41 -178.16 132 16 GLN A 360 ? ? -37.68 -39.42 133 16 VAL A 385 ? ? -35.79 -33.79 134 16 ASN A 392 ? ? -33.90 93.98 135 16 LYS A 412 ? ? -172.87 131.76 136 16 GLU A 415 ? ? -164.79 119.96 137 16 LYS A 417 ? ? -167.17 105.70 138 16 PRO A 426 ? ? -69.80 -177.29 139 17 ASN A 344 ? ? 73.06 35.47 140 17 ALA A 346 ? ? -67.52 -178.93 141 17 VAL A 385 ? ? -36.41 -37.51 142 17 ASN A 392 ? ? -33.23 93.41 143 17 PHE A 405 ? ? -58.16 108.95 144 17 GLN A 411 ? ? -113.28 79.14 145 17 SER A 427 ? ? -134.11 -62.18 146 18 SER A 331 ? ? -170.04 126.66 147 18 LYS A 336 ? ? -85.22 43.91 148 18 ASN A 344 ? ? 75.05 45.34 149 18 ALA A 346 ? ? -62.31 -175.00 150 18 GLU A 355 ? ? -76.94 -71.14 151 18 GLN A 360 ? ? -34.96 -39.57 152 18 VAL A 385 ? ? -35.43 -35.08 153 18 PHE A 405 ? ? -49.52 105.30 154 18 LYS A 417 ? ? -170.26 144.53 155 19 ASN A 344 ? ? 73.78 40.51 156 19 GLN A 360 ? ? -35.97 -39.38 157 19 VAL A 385 ? ? -36.79 -39.70 158 19 ASN A 392 ? ? -37.79 99.57 159 19 PRO A 426 ? ? -69.76 -172.21 160 20 LYS A 336 ? ? -67.58 75.59 161 20 GLU A 355 ? ? -72.72 -72.41 162 20 VAL A 385 ? ? -36.08 -35.47 163 20 ASN A 392 ? ? -39.20 92.51 164 20 ARG A 413 ? ? -123.07 -52.07 #