data_2DGW # _entry.id 2DGW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGW pdb_00002dgw 10.2210/pdb2dgw/pdb RCSB RCSB025404 ? ? WWPDB D_1000025404 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002100665.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGW _pdbx_database_status.recvd_initial_deposition_date 2006-03-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the second RNA recognition motif in RNA-binding protein 19' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Probable RNA-binding protein 19' _entity.formula_weight 10011.358 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNA-binding motif protein 19' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE VFREKSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIE VFREKSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002100665.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 THR n 1 10 CYS n 1 11 HIS n 1 12 THR n 1 13 VAL n 1 14 LYS n 1 15 LEU n 1 16 ARG n 1 17 GLY n 1 18 ALA n 1 19 PRO n 1 20 PHE n 1 21 ASN n 1 22 VAL n 1 23 THR n 1 24 GLU n 1 25 LYS n 1 26 ASN n 1 27 VAL n 1 28 MET n 1 29 GLU n 1 30 PHE n 1 31 LEU n 1 32 ALA n 1 33 PRO n 1 34 LEU n 1 35 LYS n 1 36 PRO n 1 37 VAL n 1 38 ALA n 1 39 ILE n 1 40 ARG n 1 41 ILE n 1 42 VAL n 1 43 ARG n 1 44 ASN n 1 45 ALA n 1 46 HIS n 1 47 GLY n 1 48 ASN n 1 49 LYS n 1 50 THR n 1 51 GLY n 1 52 TYR n 1 53 ILE n 1 54 PHE n 1 55 VAL n 1 56 ASP n 1 57 PHE n 1 58 SER n 1 59 ASN n 1 60 GLU n 1 61 GLU n 1 62 GLU n 1 63 VAL n 1 64 LYS n 1 65 GLN n 1 66 ALA n 1 67 LEU n 1 68 LYS n 1 69 CYS n 1 70 ASN n 1 71 ARG n 1 72 GLU n 1 73 TYR n 1 74 MET n 1 75 GLY n 1 76 GLY n 1 77 ARG n 1 78 TYR n 1 79 ILE n 1 80 GLU n 1 81 VAL n 1 82 PHE n 1 83 ARG n 1 84 GLU n 1 85 LYS n 1 86 SER n 1 87 GLY n 1 88 PRO n 1 89 SER n 1 90 SER n 1 91 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene RBM19 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051121-04 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBM19_HUMAN _struct_ref.pdbx_db_accession Q9Y4C8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 291 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 85 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y4C8 _struct_ref_seq.db_align_beg 291 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 368 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 291 _struct_ref_seq.pdbx_auth_seq_align_end 368 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGW GLY A 1 ? UNP Q9Y4C8 ? ? 'cloning artifact' 284 1 1 2DGW SER A 2 ? UNP Q9Y4C8 ? ? 'cloning artifact' 285 2 1 2DGW SER A 3 ? UNP Q9Y4C8 ? ? 'cloning artifact' 286 3 1 2DGW GLY A 4 ? UNP Q9Y4C8 ? ? 'cloning artifact' 287 4 1 2DGW SER A 5 ? UNP Q9Y4C8 ? ? 'cloning artifact' 288 5 1 2DGW SER A 6 ? UNP Q9Y4C8 ? ? 'cloning artifact' 289 6 1 2DGW GLY A 7 ? UNP Q9Y4C8 ? ? 'cloning artifact' 290 7 1 2DGW SER A 86 ? UNP Q9Y4C8 ? ? 'cloning artifact' 369 8 1 2DGW GLY A 87 ? UNP Q9Y4C8 ? ? 'cloning artifact' 370 9 1 2DGW PRO A 88 ? UNP Q9Y4C8 ? ? 'cloning artifact' 371 10 1 2DGW SER A 89 ? UNP Q9Y4C8 ? ? 'cloning artifact' 372 11 1 2DGW SER A 90 ? UNP Q9Y4C8 ? ? 'cloning artifact' 373 12 1 2DGW GLY A 91 ? UNP Q9Y4C8 ? ? 'cloning artifact' 374 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGW _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGW _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGW _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2DGW _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGW _struct.title 'Solution structure of the second RNA recognition motif in RNA-binding protein 19' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGW _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? ALA A 32 ? THR A 306 ALA A 315 1 ? 10 HELX_P HELX_P2 2 ASN A 59 ? CYS A 69 ? ASN A 342 CYS A 352 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 1 -0.04 2 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 2 0.00 3 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 3 0.03 4 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 4 -0.03 5 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 5 -0.04 6 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 6 -0.02 7 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 7 -0.01 8 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 8 -0.04 9 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 9 0.04 10 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 10 0.07 11 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 11 -0.03 12 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 12 0.07 13 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 13 0.05 14 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 14 0.03 15 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 15 -0.03 16 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 16 -0.03 17 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 17 -0.03 18 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 18 0.05 19 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 19 0.01 20 ALA 32 A . ? ALA 315 A PRO 33 A ? PRO 316 A 20 0.08 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 38 ? ARG A 43 ? ALA A 321 ARG A 326 A 2 LYS A 49 ? ASP A 56 ? LYS A 332 ASP A 339 A 3 THR A 12 ? ARG A 16 ? THR A 295 ARG A 299 A 4 ARG A 77 ? GLU A 84 ? ARG A 360 GLU A 367 A 5 GLU A 72 ? MET A 74 ? GLU A 355 MET A 357 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 40 ? N ARG A 323 O PHE A 54 ? O PHE A 337 A 2 3 O VAL A 55 ? O VAL A 338 N VAL A 13 ? N VAL A 296 A 3 4 N LYS A 14 ? N LYS A 297 O PHE A 82 ? O PHE A 365 A 4 5 O ILE A 79 ? O ILE A 362 N GLU A 72 ? N GLU A 355 # _database_PDB_matrix.entry_id 2DGW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGW _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 284 284 GLY GLY A . n A 1 2 SER 2 285 285 SER SER A . n A 1 3 SER 3 286 286 SER SER A . n A 1 4 GLY 4 287 287 GLY GLY A . n A 1 5 SER 5 288 288 SER SER A . n A 1 6 SER 6 289 289 SER SER A . n A 1 7 GLY 7 290 290 GLY GLY A . n A 1 8 THR 8 291 291 THR THR A . n A 1 9 THR 9 292 292 THR THR A . n A 1 10 CYS 10 293 293 CYS CYS A . n A 1 11 HIS 11 294 294 HIS HIS A . n A 1 12 THR 12 295 295 THR THR A . n A 1 13 VAL 13 296 296 VAL VAL A . n A 1 14 LYS 14 297 297 LYS LYS A . n A 1 15 LEU 15 298 298 LEU LEU A . n A 1 16 ARG 16 299 299 ARG ARG A . n A 1 17 GLY 17 300 300 GLY GLY A . n A 1 18 ALA 18 301 301 ALA ALA A . n A 1 19 PRO 19 302 302 PRO PRO A . n A 1 20 PHE 20 303 303 PHE PHE A . n A 1 21 ASN 21 304 304 ASN ASN A . n A 1 22 VAL 22 305 305 VAL VAL A . n A 1 23 THR 23 306 306 THR THR A . n A 1 24 GLU 24 307 307 GLU GLU A . n A 1 25 LYS 25 308 308 LYS LYS A . n A 1 26 ASN 26 309 309 ASN ASN A . n A 1 27 VAL 27 310 310 VAL VAL A . n A 1 28 MET 28 311 311 MET MET A . n A 1 29 GLU 29 312 312 GLU GLU A . n A 1 30 PHE 30 313 313 PHE PHE A . n A 1 31 LEU 31 314 314 LEU LEU A . n A 1 32 ALA 32 315 315 ALA ALA A . n A 1 33 PRO 33 316 316 PRO PRO A . n A 1 34 LEU 34 317 317 LEU LEU A . n A 1 35 LYS 35 318 318 LYS LYS A . n A 1 36 PRO 36 319 319 PRO PRO A . n A 1 37 VAL 37 320 320 VAL VAL A . n A 1 38 ALA 38 321 321 ALA ALA A . n A 1 39 ILE 39 322 322 ILE ILE A . n A 1 40 ARG 40 323 323 ARG ARG A . n A 1 41 ILE 41 324 324 ILE ILE A . n A 1 42 VAL 42 325 325 VAL VAL A . n A 1 43 ARG 43 326 326 ARG ARG A . n A 1 44 ASN 44 327 327 ASN ASN A . n A 1 45 ALA 45 328 328 ALA ALA A . n A 1 46 HIS 46 329 329 HIS HIS A . n A 1 47 GLY 47 330 330 GLY GLY A . n A 1 48 ASN 48 331 331 ASN ASN A . n A 1 49 LYS 49 332 332 LYS LYS A . n A 1 50 THR 50 333 333 THR THR A . n A 1 51 GLY 51 334 334 GLY GLY A . n A 1 52 TYR 52 335 335 TYR TYR A . n A 1 53 ILE 53 336 336 ILE ILE A . n A 1 54 PHE 54 337 337 PHE PHE A . n A 1 55 VAL 55 338 338 VAL VAL A . n A 1 56 ASP 56 339 339 ASP ASP A . n A 1 57 PHE 57 340 340 PHE PHE A . n A 1 58 SER 58 341 341 SER SER A . n A 1 59 ASN 59 342 342 ASN ASN A . n A 1 60 GLU 60 343 343 GLU GLU A . n A 1 61 GLU 61 344 344 GLU GLU A . n A 1 62 GLU 62 345 345 GLU GLU A . n A 1 63 VAL 63 346 346 VAL VAL A . n A 1 64 LYS 64 347 347 LYS LYS A . n A 1 65 GLN 65 348 348 GLN GLN A . n A 1 66 ALA 66 349 349 ALA ALA A . n A 1 67 LEU 67 350 350 LEU LEU A . n A 1 68 LYS 68 351 351 LYS LYS A . n A 1 69 CYS 69 352 352 CYS CYS A . n A 1 70 ASN 70 353 353 ASN ASN A . n A 1 71 ARG 71 354 354 ARG ARG A . n A 1 72 GLU 72 355 355 GLU GLU A . n A 1 73 TYR 73 356 356 TYR TYR A . n A 1 74 MET 74 357 357 MET MET A . n A 1 75 GLY 75 358 358 GLY GLY A . n A 1 76 GLY 76 359 359 GLY GLY A . n A 1 77 ARG 77 360 360 ARG ARG A . n A 1 78 TYR 78 361 361 TYR TYR A . n A 1 79 ILE 79 362 362 ILE ILE A . n A 1 80 GLU 80 363 363 GLU GLU A . n A 1 81 VAL 81 364 364 VAL VAL A . n A 1 82 PHE 82 365 365 PHE PHE A . n A 1 83 ARG 83 366 366 ARG ARG A . n A 1 84 GLU 84 367 367 GLU GLU A . n A 1 85 LYS 85 368 368 LYS LYS A . n A 1 86 SER 86 369 369 SER SER A . n A 1 87 GLY 87 370 370 GLY GLY A . n A 1 88 PRO 88 371 371 PRO PRO A . n A 1 89 SER 89 372 372 SER SER A . n A 1 90 SER 90 373 373 SER SER A . n A 1 91 GLY 91 374 374 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 291 ? ? -34.47 125.06 2 1 HIS A 294 ? ? -38.85 132.00 3 1 PRO A 302 ? ? -69.75 -165.90 4 1 ALA A 315 ? ? -46.37 166.56 5 1 PRO A 319 ? ? -69.77 -179.07 6 1 ASN A 327 ? ? -47.20 173.43 7 1 HIS A 329 ? ? -86.06 38.14 8 1 TYR A 335 ? ? -170.07 121.95 9 1 CYS A 352 ? ? -69.06 72.23 10 1 SER A 372 ? ? -130.15 -48.80 11 2 SER A 288 ? ? -95.45 39.09 12 2 ASN A 304 ? ? -99.24 35.75 13 2 PRO A 319 ? ? -69.73 -177.61 14 2 VAL A 325 ? ? -59.39 103.58 15 2 HIS A 329 ? ? 35.09 50.23 16 2 CYS A 352 ? ? -64.59 83.19 17 2 PRO A 371 ? ? -69.82 1.82 18 3 THR A 291 ? ? -46.60 167.07 19 3 ALA A 315 ? ? -44.40 166.25 20 3 LEU A 317 ? ? -50.03 170.80 21 3 PRO A 319 ? ? -69.79 -175.94 22 3 VAL A 325 ? ? -47.54 100.53 23 3 ASN A 327 ? ? -52.42 178.52 24 3 ASN A 331 ? ? -172.97 120.32 25 3 LYS A 332 ? ? -54.38 98.04 26 3 TYR A 335 ? ? -34.54 148.32 27 3 GLU A 367 ? ? -112.54 79.26 28 3 PRO A 371 ? ? -69.78 -178.84 29 3 SER A 373 ? ? -36.12 145.49 30 4 SER A 286 ? ? 39.84 38.93 31 4 PRO A 302 ? ? -69.77 -176.40 32 4 ASN A 304 ? ? -92.81 43.76 33 4 PRO A 319 ? ? -69.78 -163.83 34 4 ALA A 328 ? ? -41.07 -70.61 35 4 CYS A 352 ? ? -69.11 72.68 36 4 GLU A 367 ? ? -64.02 81.88 37 5 PRO A 302 ? ? -69.71 -173.14 38 5 ASN A 304 ? ? -95.34 44.44 39 5 ALA A 315 ? ? -45.54 161.54 40 5 PRO A 319 ? ? -69.77 -175.39 41 5 LYS A 332 ? ? -59.70 105.54 42 6 SER A 285 ? ? 34.96 43.28 43 6 SER A 286 ? ? -88.35 42.27 44 6 ASN A 304 ? ? -98.71 47.78 45 6 PRO A 319 ? ? -69.78 -171.94 46 6 VAL A 325 ? ? -35.38 145.14 47 6 ARG A 326 ? ? -34.37 108.70 48 6 LYS A 332 ? ? -38.17 126.14 49 6 ARG A 354 ? ? 73.18 35.82 50 6 PRO A 371 ? ? -69.75 86.23 51 7 SER A 288 ? ? -51.49 173.72 52 7 HIS A 294 ? ? -38.81 121.65 53 7 PRO A 302 ? ? -69.80 -172.79 54 7 ASN A 304 ? ? -87.42 39.98 55 7 LEU A 317 ? ? -48.09 165.72 56 7 PRO A 319 ? ? -69.75 -168.64 57 7 ASN A 327 ? ? -44.90 165.68 58 7 PRO A 371 ? ? -69.76 2.61 59 7 SER A 372 ? ? -38.38 -39.06 60 8 ASN A 304 ? ? -90.44 48.51 61 8 ALA A 315 ? ? -48.49 162.89 62 8 LEU A 317 ? ? -39.48 157.97 63 8 PRO A 319 ? ? -69.76 -175.67 64 8 VAL A 325 ? ? -49.56 106.46 65 8 CYS A 352 ? ? -65.71 74.05 66 8 SER A 372 ? ? -38.86 154.94 67 9 THR A 291 ? ? -44.14 164.18 68 9 THR A 292 ? ? -57.38 98.66 69 9 ASN A 304 ? ? -85.40 46.28 70 9 ALA A 315 ? ? -49.86 162.62 71 9 LEU A 317 ? ? -46.70 156.69 72 9 PRO A 319 ? ? -69.76 -174.65 73 9 ASN A 331 ? ? -170.68 112.68 74 9 TYR A 361 ? ? -47.01 165.93 75 9 PRO A 371 ? ? -69.80 88.83 76 10 SER A 285 ? ? 35.32 41.38 77 10 SER A 286 ? ? 39.80 50.74 78 10 ASN A 304 ? ? -92.86 46.38 79 10 ALA A 315 ? ? -41.31 161.06 80 10 PRO A 319 ? ? -69.76 -169.96 81 10 HIS A 329 ? ? -84.78 49.01 82 10 THR A 333 ? ? -103.53 79.56 83 10 TYR A 335 ? ? -168.82 117.96 84 10 ARG A 354 ? ? 31.44 38.25 85 11 SER A 286 ? ? -88.51 42.11 86 11 PRO A 302 ? ? -69.76 -170.08 87 11 GLU A 307 ? ? -38.10 -32.61 88 11 PRO A 319 ? ? -69.79 -175.76 89 11 VAL A 325 ? ? -57.67 92.23 90 11 ASN A 327 ? ? -51.36 -70.43 91 11 HIS A 329 ? ? 43.68 29.24 92 11 THR A 333 ? ? -113.71 69.28 93 11 CYS A 352 ? ? -62.05 85.04 94 11 ARG A 354 ? ? 30.59 44.59 95 11 SER A 369 ? ? 38.28 40.43 96 12 SER A 288 ? ? -90.00 43.45 97 12 SER A 289 ? ? -39.80 133.83 98 12 THR A 291 ? ? 35.06 45.02 99 12 ASN A 304 ? ? -85.00 34.41 100 12 GLU A 307 ? ? -34.46 -38.48 101 12 ALA A 315 ? ? -49.73 164.52 102 12 PRO A 319 ? ? -69.75 -176.62 103 12 HIS A 329 ? ? -121.51 -67.37 104 12 THR A 333 ? ? -173.11 148.09 105 12 CYS A 352 ? ? -95.93 52.17 106 12 SER A 369 ? ? 36.79 54.50 107 12 PRO A 371 ? ? -69.79 0.74 108 12 SER A 372 ? ? 74.34 54.03 109 13 SER A 288 ? ? -63.32 90.09 110 13 PRO A 302 ? ? -69.75 -165.97 111 13 ALA A 315 ? ? -48.40 161.95 112 13 PRO A 319 ? ? -69.74 -175.54 113 13 ARG A 326 ? ? -99.39 37.95 114 14 PRO A 302 ? ? -69.76 -178.51 115 14 ALA A 315 ? ? -46.22 163.33 116 14 PRO A 319 ? ? -69.76 -169.90 117 14 ASN A 331 ? ? -34.77 132.38 118 14 LYS A 332 ? ? -66.80 83.83 119 14 CYS A 352 ? ? -69.76 69.42 120 14 GLU A 367 ? ? -104.19 46.79 121 15 ASN A 304 ? ? -93.58 36.72 122 15 LEU A 317 ? ? -38.33 125.34 123 15 PRO A 319 ? ? -69.81 -172.07 124 15 ALA A 328 ? ? -131.79 -69.23 125 15 ASN A 331 ? ? -105.92 79.71 126 15 TYR A 335 ? ? -167.39 112.88 127 16 THR A 292 ? ? 39.63 47.01 128 16 PRO A 302 ? ? -69.73 -172.45 129 16 ALA A 315 ? ? -44.06 159.32 130 16 LEU A 317 ? ? -46.72 161.15 131 16 PRO A 319 ? ? -69.71 -173.60 132 16 ASN A 327 ? ? -133.04 -64.94 133 16 HIS A 329 ? ? -111.35 -72.47 134 16 LYS A 332 ? ? -59.93 105.17 135 16 THR A 333 ? ? -173.47 132.15 136 16 CYS A 352 ? ? -69.36 85.19 137 16 ARG A 354 ? ? 32.44 38.78 138 16 SER A 373 ? ? -84.23 42.00 139 17 SER A 285 ? ? 34.89 51.16 140 17 PRO A 302 ? ? -69.76 -171.95 141 17 ALA A 315 ? ? -48.68 163.87 142 17 PRO A 319 ? ? -69.72 -164.54 143 17 VAL A 325 ? ? -52.64 107.68 144 17 THR A 333 ? ? -118.69 72.52 145 17 ARG A 354 ? ? 35.42 42.86 146 18 SER A 285 ? ? 38.34 42.15 147 18 THR A 292 ? ? -35.49 128.26 148 18 PRO A 302 ? ? -69.78 -176.54 149 18 ASN A 304 ? ? -88.59 48.46 150 18 ALA A 315 ? ? -47.09 159.96 151 18 PRO A 319 ? ? -69.71 -178.33 152 18 THR A 333 ? ? -39.43 145.23 153 18 GLU A 345 ? ? -39.74 -36.15 154 18 GLU A 367 ? ? -101.61 74.37 155 19 PRO A 302 ? ? -69.79 -167.74 156 19 ALA A 328 ? ? -99.64 -73.57 157 19 HIS A 329 ? ? -124.28 -71.42 158 19 ARG A 354 ? ? 70.15 30.44 159 20 SER A 285 ? ? -131.65 -51.54 160 20 SER A 286 ? ? 34.52 42.32 161 20 ASN A 304 ? ? -86.89 35.44 162 20 ALA A 315 ? ? -44.58 156.74 163 20 LEU A 317 ? ? -39.01 138.40 164 20 PRO A 319 ? ? -69.78 -171.02 165 20 VAL A 325 ? ? -64.56 80.83 166 20 ASN A 327 ? ? -57.04 -179.31 167 20 TYR A 335 ? ? -34.24 140.29 168 20 ARG A 354 ? ? 37.29 49.88 169 20 PRO A 371 ? ? -69.69 95.00 #