data_2DGZ # _entry.id 2DGZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGZ pdb_00002dgz 10.2210/pdb2dgz/pdb RCSB RCSB025407 ? ? WWPDB D_1000025407 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003001883.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGZ _pdbx_database_status.recvd_initial_deposition_date 2006-03-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the Helicase and RNase D C-terminal domain in Werner syndrome ATP-dependent helicase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Werner syndrome protein variant' _entity.formula_weight 12081.733 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.6.1.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'Helicase and RNase D C-terminal domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Werner syndrome ATP-dependent helicase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSSQPVISAQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML APLWEVIKHFCQTNSVQTDLFSSTKPQSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSSQPVISAQEQETQIVLYGKLVEARQKHANKMDVPPAILATNKILVDMAKMRPTTVENVKRIDGVSEGKAAML APLWEVIKHFCQTNSVQTDLFSSTKPQSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003001883.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 SER n 1 10 GLN n 1 11 PRO n 1 12 VAL n 1 13 ILE n 1 14 SER n 1 15 ALA n 1 16 GLN n 1 17 GLU n 1 18 GLN n 1 19 GLU n 1 20 THR n 1 21 GLN n 1 22 ILE n 1 23 VAL n 1 24 LEU n 1 25 TYR n 1 26 GLY n 1 27 LYS n 1 28 LEU n 1 29 VAL n 1 30 GLU n 1 31 ALA n 1 32 ARG n 1 33 GLN n 1 34 LYS n 1 35 HIS n 1 36 ALA n 1 37 ASN n 1 38 LYS n 1 39 MET n 1 40 ASP n 1 41 VAL n 1 42 PRO n 1 43 PRO n 1 44 ALA n 1 45 ILE n 1 46 LEU n 1 47 ALA n 1 48 THR n 1 49 ASN n 1 50 LYS n 1 51 ILE n 1 52 LEU n 1 53 VAL n 1 54 ASP n 1 55 MET n 1 56 ALA n 1 57 LYS n 1 58 MET n 1 59 ARG n 1 60 PRO n 1 61 THR n 1 62 THR n 1 63 VAL n 1 64 GLU n 1 65 ASN n 1 66 VAL n 1 67 LYS n 1 68 ARG n 1 69 ILE n 1 70 ASP n 1 71 GLY n 1 72 VAL n 1 73 SER n 1 74 GLU n 1 75 GLY n 1 76 LYS n 1 77 ALA n 1 78 ALA n 1 79 MET n 1 80 LEU n 1 81 ALA n 1 82 PRO n 1 83 LEU n 1 84 TRP n 1 85 GLU n 1 86 VAL n 1 87 ILE n 1 88 LYS n 1 89 HIS n 1 90 PHE n 1 91 CYS n 1 92 GLN n 1 93 THR n 1 94 ASN n 1 95 SER n 1 96 VAL n 1 97 GLN n 1 98 THR n 1 99 ASP n 1 100 LEU n 1 101 PHE n 1 102 SER n 1 103 SER n 1 104 THR n 1 105 LYS n 1 106 PRO n 1 107 GLN n 1 108 SER n 1 109 GLY n 1 110 PRO n 1 111 SER n 1 112 SER n 1 113 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene WRN _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051212-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code WRN_HUMAN _struct_ref.pdbx_db_accession Q14191 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1140 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q14191 _struct_ref_seq.db_align_beg 1140 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1140 _struct_ref_seq.pdbx_auth_seq_align_end 1239 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGZ GLY A 1 ? UNP Q14191 ? ? 'cloning artifact' 1133 1 1 2DGZ SER A 2 ? UNP Q14191 ? ? 'cloning artifact' 1134 2 1 2DGZ SER A 3 ? UNP Q14191 ? ? 'cloning artifact' 1135 3 1 2DGZ GLY A 4 ? UNP Q14191 ? ? 'cloning artifact' 1136 4 1 2DGZ SER A 5 ? UNP Q14191 ? ? 'cloning artifact' 1137 5 1 2DGZ SER A 6 ? UNP Q14191 ? ? 'cloning artifact' 1138 6 1 2DGZ GLY A 7 ? UNP Q14191 ? ? 'cloning artifact' 1139 7 1 2DGZ SER A 108 ? UNP Q14191 ? ? 'cloning artifact' 1240 8 1 2DGZ GLY A 109 ? UNP Q14191 ? ? 'cloning artifact' 1241 9 1 2DGZ PRO A 110 ? UNP Q14191 ? ? 'cloning artifact' 1242 10 1 2DGZ SER A 111 ? UNP Q14191 ? ? 'cloning artifact' 1243 11 1 2DGZ SER A 112 ? UNP Q14191 ? ? 'cloning artifact' 1244 12 1 2DGZ GLY A 113 ? UNP Q14191 ? ? 'cloning artifact' 1245 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGZ _pdbx_nmr_refine.method 'torsion angle dynamics,restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGZ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGZ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 Delaglio,F 2 'data analysis' NMRView 5.0.4 Johnson,B.A 3 'data analysis' KUJIRA 0.932 Kobayashi,N 4 'structure solution' CYANA 2.0 Guntert,P 5 refinement CYANA 2.0 Guntert,P 6 # _exptl.entry_id 2DGZ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGZ _struct.title 'Solution structure of the Helicase and RNase D C-terminal domain in Werner syndrome ATP-dependent helicase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGZ _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;HRDC domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 14 ? MET A 39 ? SER A 1146 MET A 1171 1 ? 26 HELX_P HELX_P2 2 PRO A 42 ? ALA A 47 ? PRO A 1174 ALA A 1179 1 ? 6 HELX_P HELX_P3 3 THR A 48 ? ARG A 59 ? THR A 1180 ARG A 1191 1 ? 12 HELX_P HELX_P4 4 THR A 62 ? ILE A 69 ? THR A 1194 ILE A 1201 1 ? 8 HELX_P HELX_P5 5 GLY A 75 ? MET A 79 ? GLY A 1207 MET A 1211 5 ? 5 HELX_P HELX_P6 6 LEU A 80 ? THR A 93 ? LEU A 1212 THR A 1225 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DGZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGZ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1133 1133 GLY GLY A . n A 1 2 SER 2 1134 1134 SER SER A . n A 1 3 SER 3 1135 1135 SER SER A . n A 1 4 GLY 4 1136 1136 GLY GLY A . n A 1 5 SER 5 1137 1137 SER SER A . n A 1 6 SER 6 1138 1138 SER SER A . n A 1 7 GLY 7 1139 1139 GLY GLY A . n A 1 8 SER 8 1140 1140 SER SER A . n A 1 9 SER 9 1141 1141 SER SER A . n A 1 10 GLN 10 1142 1142 GLN GLN A . n A 1 11 PRO 11 1143 1143 PRO PRO A . n A 1 12 VAL 12 1144 1144 VAL VAL A . n A 1 13 ILE 13 1145 1145 ILE ILE A . n A 1 14 SER 14 1146 1146 SER SER A . n A 1 15 ALA 15 1147 1147 ALA ALA A . n A 1 16 GLN 16 1148 1148 GLN GLN A . n A 1 17 GLU 17 1149 1149 GLU GLU A . n A 1 18 GLN 18 1150 1150 GLN GLN A . n A 1 19 GLU 19 1151 1151 GLU GLU A . n A 1 20 THR 20 1152 1152 THR THR A . n A 1 21 GLN 21 1153 1153 GLN GLN A . n A 1 22 ILE 22 1154 1154 ILE ILE A . n A 1 23 VAL 23 1155 1155 VAL VAL A . n A 1 24 LEU 24 1156 1156 LEU LEU A . n A 1 25 TYR 25 1157 1157 TYR TYR A . n A 1 26 GLY 26 1158 1158 GLY GLY A . n A 1 27 LYS 27 1159 1159 LYS LYS A . n A 1 28 LEU 28 1160 1160 LEU LEU A . n A 1 29 VAL 29 1161 1161 VAL VAL A . n A 1 30 GLU 30 1162 1162 GLU GLU A . n A 1 31 ALA 31 1163 1163 ALA ALA A . n A 1 32 ARG 32 1164 1164 ARG ARG A . n A 1 33 GLN 33 1165 1165 GLN GLN A . n A 1 34 LYS 34 1166 1166 LYS LYS A . n A 1 35 HIS 35 1167 1167 HIS HIS A . n A 1 36 ALA 36 1168 1168 ALA ALA A . n A 1 37 ASN 37 1169 1169 ASN ASN A . n A 1 38 LYS 38 1170 1170 LYS LYS A . n A 1 39 MET 39 1171 1171 MET MET A . n A 1 40 ASP 40 1172 1172 ASP ASP A . n A 1 41 VAL 41 1173 1173 VAL VAL A . n A 1 42 PRO 42 1174 1174 PRO PRO A . n A 1 43 PRO 43 1175 1175 PRO PRO A . n A 1 44 ALA 44 1176 1176 ALA ALA A . n A 1 45 ILE 45 1177 1177 ILE ILE A . n A 1 46 LEU 46 1178 1178 LEU LEU A . n A 1 47 ALA 47 1179 1179 ALA ALA A . n A 1 48 THR 48 1180 1180 THR THR A . n A 1 49 ASN 49 1181 1181 ASN ASN A . n A 1 50 LYS 50 1182 1182 LYS LYS A . n A 1 51 ILE 51 1183 1183 ILE ILE A . n A 1 52 LEU 52 1184 1184 LEU LEU A . n A 1 53 VAL 53 1185 1185 VAL VAL A . n A 1 54 ASP 54 1186 1186 ASP ASP A . n A 1 55 MET 55 1187 1187 MET MET A . n A 1 56 ALA 56 1188 1188 ALA ALA A . n A 1 57 LYS 57 1189 1189 LYS LYS A . n A 1 58 MET 58 1190 1190 MET MET A . n A 1 59 ARG 59 1191 1191 ARG ARG A . n A 1 60 PRO 60 1192 1192 PRO PRO A . n A 1 61 THR 61 1193 1193 THR THR A . n A 1 62 THR 62 1194 1194 THR THR A . n A 1 63 VAL 63 1195 1195 VAL VAL A . n A 1 64 GLU 64 1196 1196 GLU GLU A . n A 1 65 ASN 65 1197 1197 ASN ASN A . n A 1 66 VAL 66 1198 1198 VAL VAL A . n A 1 67 LYS 67 1199 1199 LYS LYS A . n A 1 68 ARG 68 1200 1200 ARG ARG A . n A 1 69 ILE 69 1201 1201 ILE ILE A . n A 1 70 ASP 70 1202 1202 ASP ASP A . n A 1 71 GLY 71 1203 1203 GLY GLY A . n A 1 72 VAL 72 1204 1204 VAL VAL A . n A 1 73 SER 73 1205 1205 SER SER A . n A 1 74 GLU 74 1206 1206 GLU GLU A . n A 1 75 GLY 75 1207 1207 GLY GLY A . n A 1 76 LYS 76 1208 1208 LYS LYS A . n A 1 77 ALA 77 1209 1209 ALA ALA A . n A 1 78 ALA 78 1210 1210 ALA ALA A . n A 1 79 MET 79 1211 1211 MET MET A . n A 1 80 LEU 80 1212 1212 LEU LEU A . n A 1 81 ALA 81 1213 1213 ALA ALA A . n A 1 82 PRO 82 1214 1214 PRO PRO A . n A 1 83 LEU 83 1215 1215 LEU LEU A . n A 1 84 TRP 84 1216 1216 TRP TRP A . n A 1 85 GLU 85 1217 1217 GLU GLU A . n A 1 86 VAL 86 1218 1218 VAL VAL A . n A 1 87 ILE 87 1219 1219 ILE ILE A . n A 1 88 LYS 88 1220 1220 LYS LYS A . n A 1 89 HIS 89 1221 1221 HIS HIS A . n A 1 90 PHE 90 1222 1222 PHE PHE A . n A 1 91 CYS 91 1223 1223 CYS CYS A . n A 1 92 GLN 92 1224 1224 GLN GLN A . n A 1 93 THR 93 1225 1225 THR THR A . n A 1 94 ASN 94 1226 1226 ASN ASN A . n A 1 95 SER 95 1227 1227 SER SER A . n A 1 96 VAL 96 1228 1228 VAL VAL A . n A 1 97 GLN 97 1229 1229 GLN GLN A . n A 1 98 THR 98 1230 1230 THR THR A . n A 1 99 ASP 99 1231 1231 ASP ASP A . n A 1 100 LEU 100 1232 1232 LEU LEU A . n A 1 101 PHE 101 1233 1233 PHE PHE A . n A 1 102 SER 102 1234 1234 SER SER A . n A 1 103 SER 103 1235 1235 SER SER A . n A 1 104 THR 104 1236 1236 THR THR A . n A 1 105 LYS 105 1237 1237 LYS LYS A . n A 1 106 PRO 106 1238 1238 PRO PRO A . n A 1 107 GLN 107 1239 1239 GLN GLN A . n A 1 108 SER 108 1240 1240 SER SER A . n A 1 109 GLY 109 1241 1241 GLY GLY A . n A 1 110 PRO 110 1242 1242 PRO PRO A . n A 1 111 SER 111 1243 1243 SER SER A . n A 1 112 SER 112 1244 1244 SER SER A . n A 1 113 GLY 113 1245 1245 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 1147 ? ? -38.38 -34.93 2 1 GLN A 1165 ? ? -59.08 -70.23 3 1 LEU A 1232 ? ? -81.37 42.12 4 1 PRO A 1238 ? ? -69.74 -175.34 5 1 SER A 1243 ? ? -166.05 112.07 6 2 PRO A 1143 ? ? -69.74 -173.29 7 2 PRO A 1175 ? ? -47.98 -16.77 8 2 ILE A 1201 ? ? -59.32 102.09 9 2 ASP A 1202 ? ? -31.46 145.83 10 2 GLU A 1206 ? ? -34.26 129.61 11 2 LEU A 1212 ? ? -92.08 34.04 12 2 SER A 1227 ? ? 35.49 46.53 13 2 LEU A 1232 ? ? -80.93 47.51 14 2 GLN A 1239 ? ? -59.21 96.69 15 3 SER A 1141 ? ? -37.98 124.08 16 3 PRO A 1175 ? ? -47.97 -17.23 17 3 ILE A 1201 ? ? -55.42 98.14 18 3 ASP A 1202 ? ? -34.58 143.64 19 3 LEU A 1212 ? ? -87.28 32.61 20 3 PRO A 1214 ? ? -47.97 -17.74 21 3 SER A 1227 ? ? 33.98 50.83 22 3 LEU A 1232 ? ? -85.49 43.54 23 4 VAL A 1144 ? ? -49.41 168.35 24 4 PRO A 1175 ? ? -47.97 -16.76 25 4 LEU A 1178 ? ? -57.35 -70.09 26 4 GLU A 1206 ? ? -38.86 135.06 27 4 LEU A 1212 ? ? -92.69 35.53 28 4 PRO A 1214 ? ? -47.95 -17.08 29 4 SER A 1227 ? ? 34.90 51.03 30 5 SER A 1135 ? ? 38.01 42.23 31 5 SER A 1141 ? ? -168.43 115.16 32 5 GLN A 1142 ? ? -32.50 96.00 33 5 PRO A 1175 ? ? -47.96 -17.08 34 5 LEU A 1212 ? ? -89.44 32.26 35 5 PRO A 1214 ? ? -47.90 -18.16 36 5 SER A 1227 ? ? 33.70 51.53 37 5 LEU A 1232 ? ? -83.38 44.97 38 5 LYS A 1237 ? ? 35.38 54.70 39 5 PRO A 1242 ? ? -69.81 2.65 40 5 SER A 1243 ? ? -35.22 130.06 41 6 SER A 1134 ? ? -55.39 170.38 42 6 PRO A 1143 ? ? -69.74 -176.15 43 6 GLN A 1165 ? ? -89.24 -72.08 44 6 PRO A 1175 ? ? -47.95 -18.47 45 6 LEU A 1212 ? ? -89.85 34.52 46 6 PRO A 1214 ? ? -48.00 -17.15 47 6 SER A 1227 ? ? 34.23 46.48 48 6 LEU A 1232 ? ? -86.83 40.60 49 7 PRO A 1175 ? ? -47.97 -16.64 50 7 ARG A 1191 ? ? 33.65 55.05 51 7 ILE A 1201 ? ? -53.53 101.20 52 7 ASP A 1202 ? ? -35.30 145.89 53 7 ALA A 1209 ? ? -33.93 -39.51 54 7 PRO A 1214 ? ? -48.01 -16.94 55 7 LEU A 1215 ? ? -82.24 -71.34 56 7 SER A 1227 ? ? 33.84 50.78 57 7 LEU A 1232 ? ? -83.97 41.90 58 7 SER A 1240 ? ? -37.23 134.08 59 7 PRO A 1242 ? ? -69.73 -176.29 60 8 SER A 1137 ? ? -69.20 93.79 61 8 SER A 1140 ? ? 36.47 47.29 62 8 GLN A 1165 ? ? -82.00 -71.60 63 8 PRO A 1175 ? ? -48.05 -16.68 64 8 GLU A 1206 ? ? -39.06 130.71 65 8 LEU A 1212 ? ? -90.70 32.68 66 8 PRO A 1214 ? ? -47.99 -17.36 67 8 PHE A 1222 ? ? -38.95 -33.86 68 8 SER A 1227 ? ? 36.20 49.29 69 8 LEU A 1232 ? ? -84.14 41.16 70 8 SER A 1234 ? ? -89.53 41.94 71 8 PRO A 1238 ? ? -69.78 -178.80 72 9 SER A 1137 ? ? -80.46 44.51 73 9 SER A 1140 ? ? -35.80 132.54 74 9 VAL A 1144 ? ? -36.19 143.62 75 9 ALA A 1147 ? ? -33.54 -35.86 76 9 PRO A 1175 ? ? -47.92 -17.45 77 9 GLU A 1206 ? ? -36.41 127.50 78 9 LEU A 1212 ? ? -88.25 30.90 79 9 PRO A 1214 ? ? -47.96 -18.15 80 9 PHE A 1222 ? ? -34.09 -36.98 81 9 LEU A 1232 ? ? -77.18 48.28 82 9 SER A 1234 ? ? -94.77 44.42 83 9 GLN A 1239 ? ? -35.77 125.55 84 10 SER A 1135 ? ? -120.67 -57.67 85 10 SER A 1137 ? ? -121.55 -52.91 86 10 VAL A 1144 ? ? -47.28 153.77 87 10 PRO A 1175 ? ? -48.05 -16.85 88 10 ARG A 1191 ? ? 33.37 54.95 89 10 LEU A 1212 ? ? -91.02 34.85 90 10 PRO A 1214 ? ? -47.99 -19.22 91 10 SER A 1227 ? ? 34.38 42.58 92 10 LEU A 1232 ? ? -91.13 40.88 93 10 PHE A 1233 ? ? -174.97 109.39 94 10 PRO A 1242 ? ? -69.78 1.24 95 11 SER A 1137 ? ? -108.04 42.14 96 11 PRO A 1143 ? ? -69.81 -174.54 97 11 GLN A 1165 ? ? -69.04 -70.18 98 11 PRO A 1175 ? ? -47.98 -17.77 99 11 ARG A 1191 ? ? 70.61 52.70 100 11 GLU A 1206 ? ? -38.08 114.16 101 11 LEU A 1212 ? ? -85.77 31.47 102 11 SER A 1227 ? ? 34.32 42.69 103 11 LEU A 1232 ? ? -83.32 37.01 104 11 PHE A 1233 ? ? -174.99 119.18 105 11 SER A 1234 ? ? -160.51 110.34 106 11 PRO A 1238 ? ? -69.75 86.57 107 12 GLN A 1165 ? ? -63.35 -72.59 108 12 PRO A 1175 ? ? -48.00 -17.42 109 12 LEU A 1212 ? ? -90.18 33.89 110 12 PRO A 1214 ? ? -47.99 -19.14 111 12 LEU A 1232 ? ? -92.74 38.51 112 12 SER A 1243 ? ? -161.90 117.11 113 13 SER A 1137 ? ? -126.85 -57.64 114 13 PRO A 1143 ? ? -69.76 -172.67 115 13 VAL A 1144 ? ? -45.19 170.33 116 13 PRO A 1175 ? ? -48.02 -16.41 117 13 GLU A 1206 ? ? -47.69 151.32 118 13 LEU A 1212 ? ? -84.43 30.36 119 13 PRO A 1214 ? ? -47.99 -17.59 120 13 SER A 1227 ? ? 32.55 49.76 121 13 LEU A 1232 ? ? -82.91 40.93 122 13 SER A 1235 ? ? -64.83 91.41 123 14 SER A 1141 ? ? -36.72 146.93 124 14 PRO A 1175 ? ? -48.00 -16.74 125 14 LEU A 1178 ? ? -61.04 -72.34 126 14 GLU A 1206 ? ? -35.44 130.90 127 14 LEU A 1212 ? ? -85.40 30.73 128 14 PRO A 1214 ? ? -47.91 -18.94 129 14 LEU A 1215 ? ? -79.64 -70.77 130 14 SER A 1227 ? ? 35.55 46.77 131 14 LEU A 1232 ? ? -86.64 35.79 132 15 SER A 1134 ? ? -122.36 -50.12 133 15 PRO A 1175 ? ? -47.94 -16.79 134 15 ILE A 1201 ? ? -55.45 100.93 135 15 ASP A 1202 ? ? -34.80 143.32 136 15 GLU A 1206 ? ? -34.21 140.63 137 15 ALA A 1209 ? ? -35.12 -39.61 138 15 LEU A 1212 ? ? -91.84 33.84 139 15 PRO A 1214 ? ? -48.03 -17.65 140 15 PHE A 1222 ? ? -38.36 -37.36 141 15 SER A 1227 ? ? 33.90 48.98 142 15 LEU A 1232 ? ? -76.73 49.34 143 15 SER A 1243 ? ? 35.19 43.48 144 16 SER A 1137 ? ? -174.13 148.56 145 16 PRO A 1143 ? ? -69.77 -173.53 146 16 PRO A 1175 ? ? -48.04 -16.93 147 16 ARG A 1191 ? ? 39.62 54.87 148 16 LEU A 1212 ? ? -88.99 32.52 149 16 PRO A 1214 ? ? -48.03 -17.18 150 16 LEU A 1232 ? ? -85.78 43.61 151 16 LYS A 1237 ? ? -35.01 133.55 152 17 GLN A 1142 ? ? -35.85 124.52 153 17 PRO A 1143 ? ? -69.77 -175.86 154 17 PRO A 1175 ? ? -47.96 -16.51 155 17 ILE A 1201 ? ? -43.33 153.39 156 17 LEU A 1212 ? ? -87.17 32.95 157 17 PRO A 1214 ? ? -47.95 -17.57 158 17 SER A 1227 ? ? 39.37 39.52 159 17 SER A 1234 ? ? -175.03 113.00 160 17 SER A 1235 ? ? -96.01 52.76 161 18 SER A 1140 ? ? 71.86 40.90 162 18 GLN A 1165 ? ? -80.70 -70.15 163 18 PRO A 1175 ? ? -47.97 -16.81 164 18 ILE A 1201 ? ? -42.63 160.01 165 18 LEU A 1212 ? ? -90.88 31.76 166 18 PRO A 1214 ? ? -48.00 -17.14 167 18 LEU A 1215 ? ? -84.04 -70.94 168 18 LEU A 1232 ? ? -83.36 43.53 169 18 PHE A 1233 ? ? -84.75 41.24 170 18 SER A 1234 ? ? 35.09 43.76 171 18 SER A 1244 ? ? -48.81 160.60 172 19 PRO A 1175 ? ? -47.96 -17.42 173 19 LEU A 1212 ? ? -84.86 30.05 174 19 PRO A 1214 ? ? -47.95 -17.91 175 19 PHE A 1222 ? ? -39.94 -34.40 176 19 SER A 1227 ? ? 34.75 48.85 177 19 LEU A 1232 ? ? -83.51 42.58 178 19 PRO A 1238 ? ? -69.71 81.10 179 20 ASP A 1172 ? ? 72.14 33.63 180 20 LYS A 1189 ? ? -97.42 -60.47 181 20 LEU A 1212 ? ? -89.09 32.58 182 20 PRO A 1214 ? ? -47.90 -17.26 183 20 LEU A 1232 ? ? -88.41 44.71 184 20 THR A 1236 ? ? -88.03 40.64 #