HEADER RNA BINDING PROTEIN 23-MAR-06 2DH7 TITLE SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN NUCLEOLYSIN TITLE 2 TIAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOLYSIN TIAR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: TIA-1-RELATED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIAL1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-24; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DH7 1 REMARK REVDAT 3 09-MAR-22 2DH7 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DH7 1 VERSN REVDAT 1 23-SEP-06 2DH7 0 JRNL AUTH T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND RNA BINDING DOMAIN IN JRNL TITL 2 NUCLEOLYSIN TIAR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DH7 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025415. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 87 96.99 -68.80 REMARK 500 1 SER A 105 153.56 -36.19 REMARK 500 1 PRO A 119 -17.19 -47.93 REMARK 500 1 SER A 137 104.22 -40.90 REMARK 500 1 GLN A 161 148.13 -38.86 REMARK 500 1 SER A 184 130.40 -170.78 REMARK 500 2 LYS A 91 40.61 -94.28 REMARK 500 2 SER A 105 152.16 -35.94 REMARK 500 2 THR A 110 -35.97 -39.01 REMARK 500 2 PRO A 119 -17.02 -47.98 REMARK 500 2 ILE A 155 -39.73 -38.64 REMARK 500 2 GLN A 161 154.94 -36.74 REMARK 500 2 LEU A 163 -70.89 -84.29 REMARK 500 2 THR A 174 103.58 -52.89 REMARK 500 3 SER A 83 -53.46 -122.37 REMARK 500 3 THR A 93 53.03 34.17 REMARK 500 3 SER A 94 92.84 -44.96 REMARK 500 3 ASN A 95 36.24 34.43 REMARK 500 3 HIS A 96 174.49 -50.66 REMARK 500 3 SER A 105 153.22 -35.85 REMARK 500 3 PRO A 119 -17.03 -47.98 REMARK 500 3 SER A 137 102.61 -55.23 REMARK 500 3 ILE A 155 -37.72 -39.31 REMARK 500 3 GLN A 161 157.82 -38.25 REMARK 500 3 LEU A 163 -70.50 -90.88 REMARK 500 3 SER A 181 175.62 -59.30 REMARK 500 4 LYS A 90 46.78 -95.29 REMARK 500 4 LYS A 91 106.30 -53.23 REMARK 500 4 THR A 93 125.79 -35.29 REMARK 500 4 SER A 94 -50.35 -128.33 REMARK 500 4 SER A 105 153.31 -41.61 REMARK 500 4 PRO A 119 -17.07 -48.00 REMARK 500 4 ALA A 133 -62.55 -101.58 REMARK 500 4 GLN A 161 149.74 -34.32 REMARK 500 4 LEU A 163 -71.04 -87.24 REMARK 500 5 LYS A 91 44.77 -89.20 REMARK 500 5 SER A 94 -59.13 -124.32 REMARK 500 5 ASN A 95 43.40 -98.94 REMARK 500 5 SER A 105 155.23 -36.64 REMARK 500 5 THR A 110 -37.49 -39.75 REMARK 500 5 PRO A 119 -16.75 -48.06 REMARK 500 5 GLN A 161 151.51 -34.78 REMARK 500 5 LEU A 163 -70.08 -85.31 REMARK 500 5 ALA A 173 42.97 -87.53 REMARK 500 6 SER A 94 -56.10 -129.93 REMARK 500 6 HIS A 96 152.92 -42.28 REMARK 500 6 SER A 105 153.44 -39.67 REMARK 500 6 ILE A 108 151.02 -50.00 REMARK 500 6 PRO A 119 -17.12 -47.93 REMARK 500 6 SER A 137 106.88 -47.61 REMARK 500 REMARK 500 THIS ENTRY HAS 169 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002000434.3 RELATED DB: TARGETDB DBREF 2DH7 A 89 180 UNP Q01085 TIAR_HUMAN 87 180 SEQADV 2DH7 GLY A 82 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 83 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 84 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 GLY A 85 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 86 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 87 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 GLY A 88 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 181 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 GLY A 182 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 PRO A 183 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 184 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 SER A 185 UNP Q01085 CLONING ARTIFACT SEQADV 2DH7 GLY A 186 UNP Q01085 CLONING ARTIFACT SEQRES 1 A 105 GLY SER SER GLY SER SER GLY GLN LYS LYS ASP THR SER SEQRES 2 A 105 ASN HIS PHE HIS VAL PHE VAL GLY ASP LEU SER PRO GLU SEQRES 3 A 105 ILE THR THR GLU ASP ILE LYS SER ALA PHE ALA PRO PHE SEQRES 4 A 105 GLY LYS ILE SER ASP ALA ARG VAL VAL LYS ASP MET ALA SEQRES 5 A 105 THR GLY LYS SER LYS GLY TYR GLY PHE VAL SER PHE TYR SEQRES 6 A 105 ASN LYS LEU ASP ALA GLU ASN ALA ILE VAL HIS MET GLY SEQRES 7 A 105 GLY GLN TRP LEU GLY GLY ARG GLN ILE ARG THR ASN TRP SEQRES 8 A 105 ALA THR ARG LYS PRO PRO ALA PRO SER GLY PRO SER SER SEQRES 9 A 105 GLY HELIX 1 1 THR A 109 PHE A 117 1 9 HELIX 2 2 ASN A 147 MET A 158 1 12 SHEET 1 A 3 PHE A 97 GLY A 102 0 SHEET 2 A 3 SER A 137 PHE A 145 -1 O GLY A 141 N VAL A 101 SHEET 3 A 3 ILE A 123 LYS A 130 -1 N ASP A 125 O SER A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1