HEADER RNA BINDING PROTEIN 23-MAR-06 2DH9 TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RNA BINDING DOMAIN IN TITLE 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M COMPND MOL_ID: 1; COMPND 2 MOLECULE: HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 SYNONYM: HNRNP M; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HNRPM; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050711-05; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.OCHI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DH9 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DH9 1 VERSN REVDAT 1 23-SEP-06 2DH9 0 JRNL AUTH T.OCHI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL RNA BINDING DOMAIN IN JRNL TITL 2 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN M JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DH9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025417. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE REMARK 210 DYNAMICS,RESTRAINTED MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 544 39.34 73.89 REMARK 500 1 PHE A 549 107.58 -39.42 REMARK 500 1 ALA A 567 109.72 -167.33 REMARK 500 1 ASN A 614 49.50 36.42 REMARK 500 2 SER A 535 43.37 -99.99 REMARK 500 2 ASN A 544 36.92 73.86 REMARK 500 2 ASP A 548 -38.23 -35.22 REMARK 500 2 LEU A 554 -36.01 -36.54 REMARK 500 2 LYS A 555 -72.12 -80.54 REMARK 500 2 ALA A 567 113.90 -162.04 REMARK 500 2 LYS A 570 95.97 -48.14 REMARK 500 2 GLU A 572 148.83 -172.54 REMARK 500 2 LYS A 577 34.48 -99.01 REMARK 500 2 ASN A 598 125.07 -36.79 REMARK 500 2 PRO A 618 98.06 -69.77 REMARK 500 3 SER A 534 152.47 -35.87 REMARK 500 3 SER A 538 77.26 -104.27 REMARK 500 3 ASN A 544 36.43 74.80 REMARK 500 3 LYS A 570 107.88 -56.49 REMARK 500 3 GLU A 572 119.11 -174.15 REMARK 500 3 ASP A 612 39.50 -87.23 REMARK 500 3 ALA A 615 99.81 -44.19 REMARK 500 3 SER A 620 144.61 -174.79 REMARK 500 4 PHE A 549 108.25 -44.38 REMARK 500 4 LYS A 570 105.45 -56.72 REMARK 500 4 GLU A 572 129.16 -173.72 REMARK 500 5 SER A 535 86.31 -67.86 REMARK 500 5 ASP A 548 -39.28 -34.47 REMARK 500 5 LEU A 554 -39.78 -38.71 REMARK 500 5 ASN A 598 97.06 -35.84 REMARK 500 6 SER A 534 147.18 -39.37 REMARK 500 6 ASP A 548 -33.60 -34.09 REMARK 500 6 LYS A 570 106.02 -54.52 REMARK 500 6 GLU A 572 115.66 -161.99 REMARK 500 6 ASN A 598 106.26 -34.17 REMARK 500 6 ASP A 612 48.95 -94.67 REMARK 500 6 ASN A 614 87.71 -67.27 REMARK 500 6 PRO A 618 87.29 -69.71 REMARK 500 6 SER A 619 103.84 -55.15 REMARK 500 7 SER A 535 104.14 -56.19 REMARK 500 7 ASN A 544 38.87 71.55 REMARK 500 7 ASP A 548 -32.30 -35.54 REMARK 500 7 ALA A 567 118.89 -161.17 REMARK 500 7 LYS A 570 105.25 -49.35 REMARK 500 7 SER A 576 97.49 -69.26 REMARK 500 7 LYS A 577 39.58 -85.77 REMARK 500 7 ASN A 598 96.10 -33.91 REMARK 500 7 ASP A 612 45.39 -84.53 REMARK 500 7 PRO A 618 -177.00 -69.74 REMARK 500 8 PHE A 549 103.88 -45.98 REMARK 500 REMARK 500 THIS ENTRY HAS 125 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003002075.2 RELATED DB: TARGETDB DBREF 2DH9 A 540 615 UNP P52272 HNRPM_HUMAN 654 729 SEQADV 2DH9 GLY A 533 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 534 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 535 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 536 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 537 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 538 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 539 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 616 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 617 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 PRO A 618 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 619 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 SER A 620 UNP P52272 CLONING ARTIFACT SEQADV 2DH9 GLY A 621 UNP P52272 CLONING ARTIFACT SEQRES 1 A 89 GLY SER SER GLY SER SER GLY ILE PHE VAL ARG ASN LEU SEQRES 2 A 89 PRO PHE ASP PHE THR TRP LYS MET LEU LYS ASP LYS PHE SEQRES 3 A 89 ASN GLU CYS GLY HIS VAL LEU TYR ALA ASP ILE LYS MET SEQRES 4 A 89 GLU ASN GLY LYS SER LYS GLY CYS GLY VAL VAL LYS PHE SEQRES 5 A 89 GLU SER PRO GLU VAL ALA GLU ARG ALA CYS ARG MET MET SEQRES 6 A 89 ASN GLY MET LYS LEU SER GLY ARG GLU ILE ASP VAL ARG SEQRES 7 A 89 ILE ASP ARG ASN ALA SER GLY PRO SER SER GLY HELIX 1 1 THR A 550 GLU A 560 1 11 HELIX 2 2 SER A 586 MET A 597 1 12 SHEET 1 A 4 VAL A 564 ASP A 568 0 SHEET 2 A 4 CYS A 579 PHE A 584 -1 O LYS A 583 N LEU A 565 SHEET 3 A 4 GLY A 539 ARG A 543 -1 N ILE A 540 O VAL A 582 SHEET 4 A 4 ARG A 610 ASP A 612 -1 O ARG A 610 N PHE A 541 SHEET 1 B 2 MET A 571 GLU A 572 0 SHEET 2 B 2 LYS A 575 SER A 576 -1 O LYS A 575 N GLU A 572 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1