HEADER RNA BINDING PROTEIN 23-MAR-06 2DHG TITLE SOLUTION STRUCTURE OF THE C-TERMINAL RNA RECOGNITION MOTIF IN TRNA TITLE 2 SELENOCYSTEINE ASSOCIATED PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA SELENOCYSTEINE ASSOCIATED PROTEIN (SECP43); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRSPAP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050829-18; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DHG 1 REMARK REVDAT 3 09-MAR-22 2DHG 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DHG 1 VERSN REVDAT 1 23-SEP-06 2DHG 0 JRNL AUTH T.IMAI,K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE C-TERMINAL RNA RECOGNITION MOTIF JRNL TITL 2 IN TRNA SELENOCYSTEINE ASSOCIATED PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DHG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025419. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 88 42.00 -89.19 REMARK 500 1 PRO A 94 -173.27 -69.73 REMARK 500 1 PRO A 105 2.99 -69.82 REMARK 500 1 PHE A 116 -68.16 -95.25 REMARK 500 1 VAL A 117 -30.10 -36.70 REMARK 500 1 PRO A 121 0.53 -69.82 REMARK 500 1 GLN A 158 137.90 -35.60 REMARK 500 1 SER A 165 -32.87 -37.40 REMARK 500 1 PRO A 167 -179.19 -69.82 REMARK 500 1 PRO A 175 -173.91 -69.76 REMARK 500 1 LYS A 176 94.61 -54.81 REMARK 500 1 ALA A 177 76.29 -107.33 REMARK 500 2 PRO A 105 2.14 -69.72 REMARK 500 2 LEU A 112 -32.88 -35.75 REMARK 500 2 PHE A 116 -64.92 -95.27 REMARK 500 2 VAL A 117 -30.92 -36.78 REMARK 500 2 PRO A 121 1.94 -69.74 REMARK 500 2 SER A 136 106.76 -40.21 REMARK 500 2 GLN A 158 140.33 -39.00 REMARK 500 2 SER A 165 40.35 -82.09 REMARK 500 2 PRO A 187 96.61 -69.74 REMARK 500 3 SER A 88 175.97 -51.06 REMARK 500 3 THR A 104 151.26 -47.52 REMARK 500 3 PHE A 116 -65.78 -95.25 REMARK 500 3 VAL A 117 -28.42 -37.16 REMARK 500 3 PRO A 121 2.94 -69.72 REMARK 500 3 SER A 136 106.83 -34.57 REMARK 500 3 GLN A 158 139.86 -34.99 REMARK 500 3 ALA A 177 -72.54 -61.21 REMARK 500 4 GLU A 95 174.94 -50.98 REMARK 500 4 THR A 104 150.10 -48.31 REMARK 500 4 PHE A 116 -67.09 -95.30 REMARK 500 4 VAL A 117 -29.41 -36.51 REMARK 500 4 PRO A 121 2.39 -69.75 REMARK 500 4 GLN A 132 -19.99 -48.56 REMARK 500 4 SER A 136 105.78 -43.23 REMARK 500 4 PRO A 182 85.56 -69.78 REMARK 500 5 SER A 91 141.34 -170.37 REMARK 500 5 PRO A 105 2.21 -69.76 REMARK 500 5 PHE A 116 -66.98 -95.28 REMARK 500 5 VAL A 117 -30.97 -36.73 REMARK 500 5 SER A 122 32.28 -99.25 REMARK 500 5 SER A 136 107.20 -44.18 REMARK 500 5 ARG A 152 -33.29 -39.41 REMARK 500 6 SER A 91 129.23 -38.76 REMARK 500 6 PHE A 116 -62.74 -95.25 REMARK 500 6 VAL A 117 -26.39 -38.44 REMARK 500 6 PRO A 121 2.81 -69.73 REMARK 500 6 LYS A 176 71.29 -109.36 REMARK 500 6 SER A 178 56.64 -98.40 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001121.1 RELATED DB: TARGETDB DBREF 2DHG A 94 184 UNP Q9NX07 Q9NX07_HUMAN 94 184 SEQADV 2DHG GLY A 87 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 88 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 89 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 90 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 91 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 92 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 93 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 185 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 186 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG PRO A 187 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 188 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG SER A 189 UNP Q9NX07 CLONING ARTIFACT SEQADV 2DHG GLY A 190 UNP Q9NX07 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY PRO GLU TYR SER LEU PHE SEQRES 2 A 104 VAL GLY ASP LEU THR PRO ASP VAL ASP ASP GLY MET LEU SEQRES 3 A 104 TYR GLU PHE PHE VAL LYS VAL TYR PRO SER CYS ARG GLY SEQRES 4 A 104 GLY LYS VAL VAL LEU ASP GLN THR GLY VAL SER LYS GLY SEQRES 5 A 104 TYR GLY PHE VAL LYS PHE THR ASP GLU LEU GLU GLN LYS SEQRES 6 A 104 ARG ALA LEU THR GLU CYS GLN GLY ALA VAL GLY LEU GLY SEQRES 7 A 104 SER LYS PRO VAL ARG LEU SER VAL ALA ILE PRO LYS ALA SEQRES 8 A 104 SER ARG VAL LYS PRO VAL GLU SER GLY PRO SER SER GLY HELIX 1 1 ASP A 108 TYR A 120 1 13 HELIX 2 2 ASP A 146 CYS A 157 1 12 SHEET 1 A 3 LEU A 98 GLY A 101 0 SHEET 2 A 3 SER A 136 PHE A 144 -1 O GLY A 140 N VAL A 100 SHEET 3 A 3 CYS A 123 LEU A 130 -1 N LYS A 127 O PHE A 141 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1