data_2DHK # _entry.id 2DHK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DHK pdb_00002dhk 10.2210/pdb2dhk/pdb RCSB RCSB025423 ? ? WWPDB D_1000025423 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002043.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DHK _pdbx_database_status.recvd_initial_deposition_date 2006-03-24 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Harada, T.' 4 'Watanabe, S.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the PH domain of TBC1 domain family member 2 protein from human' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, H.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Harada, T.' 4 ? primary 'Watanabe, S.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'TBC1 domain family member 2' _entity.formula_weight 13309.069 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PH domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prostate antigen recognized and identified by SEREX, PARIS-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTPSR VITLKAATKQAMLYWLQQLQMKRWEFHNSPPAPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTPSR VITLKAATKQAMLYWLQQLQMKRWEFHNSPPAPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002043.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 LYS n 1 10 LEU n 1 11 CYS n 1 12 GLY n 1 13 TYR n 1 14 LEU n 1 15 SER n 1 16 LYS n 1 17 PHE n 1 18 GLY n 1 19 GLY n 1 20 LYS n 1 21 GLY n 1 22 PRO n 1 23 ILE n 1 24 ARG n 1 25 GLY n 1 26 TRP n 1 27 LYS n 1 28 SER n 1 29 ARG n 1 30 TRP n 1 31 PHE n 1 32 PHE n 1 33 TYR n 1 34 ASP n 1 35 GLU n 1 36 ARG n 1 37 LYS n 1 38 CYS n 1 39 GLN n 1 40 LEU n 1 41 TYR n 1 42 TYR n 1 43 SER n 1 44 ARG n 1 45 THR n 1 46 ALA n 1 47 GLN n 1 48 ASP n 1 49 ALA n 1 50 ASN n 1 51 PRO n 1 52 LEU n 1 53 ASP n 1 54 SER n 1 55 ILE n 1 56 ASP n 1 57 LEU n 1 58 SER n 1 59 SER n 1 60 ALA n 1 61 VAL n 1 62 PHE n 1 63 ASP n 1 64 CYS n 1 65 LYS n 1 66 ALA n 1 67 ASP n 1 68 ALA n 1 69 GLU n 1 70 GLU n 1 71 GLY n 1 72 ILE n 1 73 PHE n 1 74 GLU n 1 75 ILE n 1 76 LYS n 1 77 THR n 1 78 PRO n 1 79 SER n 1 80 ARG n 1 81 VAL n 1 82 ILE n 1 83 THR n 1 84 LEU n 1 85 LYS n 1 86 ALA n 1 87 ALA n 1 88 THR n 1 89 LYS n 1 90 GLN n 1 91 ALA n 1 92 MET n 1 93 LEU n 1 94 TYR n 1 95 TRP n 1 96 LEU n 1 97 GLN n 1 98 GLN n 1 99 LEU n 1 100 GLN n 1 101 MET n 1 102 LYS n 1 103 ARG n 1 104 TRP n 1 105 GLU n 1 106 PHE n 1 107 HIS n 1 108 ASN n 1 109 SER n 1 110 PRO n 1 111 PRO n 1 112 ALA n 1 113 PRO n 1 114 SER n 1 115 GLY n 1 116 PRO n 1 117 SER n 1 118 SER n 1 119 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'TBC1D2, PARIS1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051205-24 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TBCD2_HUMAN _struct_ref.pdbx_db_accession Q9BYX2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 46 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DHK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BYX2 _struct_ref_seq.db_align_beg 46 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 151 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 113 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DHK GLY A 1 ? UNP Q9BYX2 ? ? 'cloning artifact' 1 1 1 2DHK SER A 2 ? UNP Q9BYX2 ? ? 'cloning artifact' 2 2 1 2DHK SER A 3 ? UNP Q9BYX2 ? ? 'cloning artifact' 3 3 1 2DHK GLY A 4 ? UNP Q9BYX2 ? ? 'cloning artifact' 4 4 1 2DHK SER A 5 ? UNP Q9BYX2 ? ? 'cloning artifact' 5 5 1 2DHK SER A 6 ? UNP Q9BYX2 ? ? 'cloning artifact' 6 6 1 2DHK GLY A 7 ? UNP Q9BYX2 ? ? 'cloning artifact' 7 7 1 2DHK SER A 114 ? UNP Q9BYX2 ? ? 'cloning artifact' 114 8 1 2DHK GLY A 115 ? UNP Q9BYX2 ? ? 'cloning artifact' 115 9 1 2DHK PRO A 116 ? UNP Q9BYX2 ? ? 'cloning artifact' 116 10 1 2DHK SER A 117 ? UNP Q9BYX2 ? ? 'cloning artifact' 117 11 1 2DHK SER A 118 ? UNP Q9BYX2 ? ? 'cloning artifact' 118 12 1 2DHK GLY A 119 ? UNP Q9BYX2 ? ? 'cloning artifact' 119 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.31mM PH domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DHK _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DHK _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DHK _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DHK _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DHK _struct.title 'Solution structure of the PH domain of TBC1 domain family member 2 protein from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DHK _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;PH domain, PARIS-1, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, IMMUNE SYSTEM ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 89 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id SER _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 109 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 89 _struct_conf.end_auth_comp_id SER _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 109 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 53 ? ASP A 56 ? ASP A 53 ASP A 56 A 2 GLN A 39 ? SER A 43 ? GLN A 39 SER A 43 A 3 LYS A 27 ? ASP A 34 ? LYS A 27 ASP A 34 A 4 CYS A 11 ? LYS A 16 ? CYS A 11 LYS A 16 A 5 ILE A 82 ? LYS A 85 ? ILE A 82 LYS A 85 A 6 ILE A 72 ? LYS A 76 ? ILE A 72 LYS A 76 A 7 VAL A 61 ? CYS A 64 ? VAL A 61 CYS A 64 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASP A 53 ? O ASP A 53 N TYR A 42 ? N TYR A 42 A 2 3 O TYR A 41 ? O TYR A 41 N PHE A 32 ? N PHE A 32 A 3 4 O ARG A 29 ? O ARG A 29 N LEU A 14 ? N LEU A 14 A 4 5 N SER A 15 ? N SER A 15 O LYS A 85 ? O LYS A 85 A 5 6 O ILE A 82 ? O ILE A 82 N ILE A 75 ? N ILE A 75 A 6 7 O LYS A 76 ? O LYS A 76 N VAL A 61 ? N VAL A 61 # _database_PDB_matrix.entry_id 2DHK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DHK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 TRP 30 30 30 TRP TRP A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 ASP 34 34 34 ASP ASP A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 TYR 41 41 41 TYR TYR A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 PHE 62 62 62 PHE PHE A . n A 1 63 ASP 63 63 63 ASP ASP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 PHE 73 73 73 PHE PHE A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 LYS 89 89 89 LYS LYS A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 MET 92 92 92 MET MET A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 TRP 95 95 95 TRP TRP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLN 97 97 97 GLN GLN A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLN 100 100 100 GLN GLN A . n A 1 101 MET 101 101 101 MET MET A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 TRP 104 104 104 TRP TRP A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 HIS 107 107 107 HIS HIS A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 SER 117 117 117 SER SER A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 GLY 119 119 119 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_remark.id 650 _pdbx_database_remark.text ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 8 ? ? -91.73 43.09 2 1 LYS A 9 ? ? -50.64 171.88 3 1 ALA A 49 ? ? -34.10 -39.84 4 1 ASP A 67 ? ? -93.26 36.73 5 1 PRO A 78 ? ? -69.77 3.04 6 1 SER A 109 ? ? -36.48 144.19 7 1 PRO A 111 ? ? -69.83 -174.97 8 1 ALA A 112 ? ? -36.05 143.92 9 1 PRO A 113 ? ? -69.76 -173.75 10 2 LYS A 8 ? ? -86.81 46.82 11 2 ALA A 49 ? ? -34.30 -38.80 12 2 ASP A 67 ? ? -88.51 34.30 13 2 PRO A 78 ? ? -69.81 3.19 14 2 SER A 109 ? ? -34.55 130.95 15 2 PRO A 111 ? ? -69.72 -177.10 16 2 SER A 114 ? ? -103.21 47.45 17 2 PRO A 116 ? ? -69.76 -178.26 18 2 SER A 118 ? ? -44.35 107.47 19 3 LYS A 9 ? ? -39.77 130.35 20 3 ILE A 23 ? ? -47.71 166.39 21 3 ASP A 67 ? ? -90.23 33.79 22 3 GLU A 69 ? ? -36.38 -30.93 23 3 PRO A 78 ? ? -69.71 3.25 24 3 ALA A 87 ? ? -65.48 -71.02 25 3 LEU A 99 ? ? -33.35 -39.12 26 3 PRO A 111 ? ? -69.75 -177.82 27 3 PRO A 113 ? ? -69.71 90.79 28 3 PRO A 116 ? ? -69.75 96.47 29 4 LYS A 8 ? ? -98.15 40.57 30 4 ASP A 67 ? ? -91.64 35.11 31 4 PRO A 78 ? ? -69.82 3.33 32 4 ALA A 112 ? ? -42.87 163.44 33 4 PRO A 113 ? ? -69.81 -172.31 34 4 SER A 114 ? ? 35.66 44.97 35 4 PRO A 116 ? ? -69.85 95.67 36 5 LYS A 8 ? ? -82.58 44.40 37 5 ASP A 67 ? ? -84.91 37.58 38 5 PRO A 78 ? ? -69.77 4.72 39 5 SER A 109 ? ? -35.59 103.39 40 5 PRO A 111 ? ? -69.74 -175.19 41 5 PRO A 113 ? ? -69.76 -171.03 42 6 SER A 2 ? ? -39.20 112.38 43 6 SER A 5 ? ? -59.97 90.67 44 6 ASP A 67 ? ? -96.87 31.28 45 6 PRO A 78 ? ? -69.73 4.71 46 6 LEU A 99 ? ? -33.17 -38.95 47 6 SER A 109 ? ? -37.77 99.61 48 6 ALA A 112 ? ? -37.99 143.29 49 6 PRO A 113 ? ? -69.80 -170.19 50 7 SER A 5 ? ? 39.10 44.51 51 7 ASP A 67 ? ? -98.70 35.94 52 7 PRO A 78 ? ? -69.74 3.84 53 7 SER A 109 ? ? -38.09 146.11 54 7 PRO A 111 ? ? -69.79 -174.19 55 7 PRO A 113 ? ? -69.82 87.95 56 8 PRO A 78 ? ? -69.79 5.12 57 9 LYS A 8 ? ? -98.38 38.69 58 9 ALA A 49 ? ? -37.65 -30.73 59 9 ASP A 67 ? ? -85.40 33.89 60 9 PRO A 78 ? ? -69.73 3.17 61 9 SER A 117 ? ? -39.69 102.80 62 10 LYS A 9 ? ? -40.41 160.85 63 10 LYS A 20 ? ? -87.83 42.83 64 10 PRO A 78 ? ? -69.75 3.27 65 10 SER A 109 ? ? -33.88 96.80 66 10 ALA A 112 ? ? -37.33 144.57 67 10 SER A 114 ? ? -167.76 108.08 68 11 SER A 6 ? ? -172.63 148.03 69 11 LYS A 9 ? ? -49.19 158.80 70 11 LYS A 20 ? ? -54.16 176.74 71 11 ALA A 49 ? ? -33.34 -39.56 72 11 ASP A 67 ? ? -83.87 36.68 73 11 PRO A 78 ? ? -69.81 1.75 74 11 LEU A 99 ? ? -33.11 -39.22 75 11 TRP A 104 ? ? -39.28 -39.87 76 11 SER A 109 ? ? -34.51 122.50 77 11 PRO A 111 ? ? -69.76 -178.29 78 11 ALA A 112 ? ? -34.08 148.10 79 11 PRO A 116 ? ? -69.77 2.82 80 11 SER A 117 ? ? -34.54 139.51 81 12 SER A 2 ? ? -49.37 158.28 82 12 ALA A 49 ? ? -37.29 -37.73 83 12 ASP A 67 ? ? -83.89 34.73 84 12 GLU A 69 ? ? -37.75 -34.91 85 12 PRO A 78 ? ? -69.80 1.61 86 12 ALA A 87 ? ? -52.84 -73.24 87 12 LEU A 99 ? ? -33.38 -39.84 88 12 SER A 109 ? ? -33.27 96.40 89 12 PRO A 113 ? ? -69.71 2.66 90 12 SER A 114 ? ? -34.87 106.22 91 13 SER A 5 ? ? -173.34 125.32 92 13 LYS A 65 ? ? -47.54 174.51 93 13 ASP A 67 ? ? -85.17 35.87 94 13 PRO A 78 ? ? -69.78 7.26 95 13 ALA A 87 ? ? -40.82 -71.82 96 13 LEU A 99 ? ? -33.23 -39.99 97 13 SER A 109 ? ? -40.32 160.62 98 14 SER A 5 ? ? 39.07 42.00 99 14 LYS A 8 ? ? -165.09 108.96 100 14 TRP A 26 ? ? -48.39 160.93 101 14 LYS A 65 ? ? -57.23 179.45 102 14 ASP A 67 ? ? -96.66 36.15 103 14 PRO A 78 ? ? -69.73 5.04 104 14 ALA A 87 ? ? -50.70 -73.58 105 14 SER A 109 ? ? -33.63 96.37 106 14 PRO A 111 ? ? -69.80 -175.07 107 14 SER A 118 ? ? -34.58 140.58 108 15 LYS A 20 ? ? -38.29 96.47 109 15 ARG A 24 ? ? -30.92 111.60 110 15 CYS A 38 ? ? 70.92 44.62 111 15 LYS A 65 ? ? -37.70 157.05 112 15 ASP A 67 ? ? -94.38 36.53 113 15 GLU A 69 ? ? -39.22 -29.66 114 15 PRO A 78 ? ? -69.75 3.06 115 15 SER A 109 ? ? -38.56 122.60 116 15 PRO A 113 ? ? -69.80 85.04 117 16 SER A 6 ? ? -85.66 39.53 118 16 LYS A 65 ? ? -69.51 -178.01 119 16 ASP A 67 ? ? -92.07 39.57 120 16 PRO A 78 ? ? -69.70 3.93 121 17 SER A 3 ? ? -128.64 -58.48 122 17 LYS A 9 ? ? -38.92 156.89 123 17 ALA A 49 ? ? -36.35 -38.14 124 17 ASP A 67 ? ? -85.73 37.65 125 17 PRO A 78 ? ? -69.74 3.13 126 17 ALA A 87 ? ? -51.48 -71.98 127 17 LEU A 99 ? ? -33.34 -38.51 128 17 SER A 109 ? ? -38.06 152.52 129 17 PRO A 111 ? ? -69.71 -173.68 130 18 LYS A 20 ? ? -62.32 95.34 131 18 ASP A 67 ? ? -83.45 35.62 132 18 PRO A 78 ? ? -69.79 6.26 133 18 ALA A 112 ? ? -34.52 137.15 134 18 PRO A 113 ? ? -69.69 -178.38 135 19 LYS A 8 ? ? -87.15 44.49 136 19 ASP A 67 ? ? -90.83 30.00 137 19 PRO A 78 ? ? -69.74 4.35 138 19 PRO A 113 ? ? -69.68 97.53 139 20 ASP A 48 ? ? -66.73 75.00 140 20 ASP A 67 ? ? -84.05 35.54 141 20 GLU A 69 ? ? -39.19 -34.52 142 20 ALA A 87 ? ? -53.04 -71.99 143 20 SER A 118 ? ? -164.70 118.39 #