data_2DHY # _entry.id 2DHY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DHY pdb_00002dhy 10.2210/pdb2dhy/pdb RCSB RCSB025434 ? ? WWPDB D_1000025434 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001610.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DHY _pdbx_database_status.recvd_initial_deposition_date 2006-03-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhao, C.' 1 'Kigawa, T.' 2 'Sato, M.' 3 'Koshiba, S.' 4 'Inoue, M.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution Structure of the CUE Domain in the Human CUE Domain Containing Protein 1 (CUEDC1)' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, C.' 1 ? primary 'Kigawa, T.' 2 ? primary 'Sato, M.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'CUE domain-containing protein 1' _entity.formula_weight 7303.106 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'CUE domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGRPARQVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001610.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 PRO n 1 10 ALA n 1 11 ARG n 1 12 GLN n 1 13 VAL n 1 14 ARG n 1 15 ARG n 1 16 LEU n 1 17 GLU n 1 18 PHE n 1 19 ASN n 1 20 GLN n 1 21 ALA n 1 22 MET n 1 23 ASP n 1 24 ASP n 1 25 PHE n 1 26 LYS n 1 27 THR n 1 28 MET n 1 29 PHE n 1 30 PRO n 1 31 ASN n 1 32 MET n 1 33 ASP n 1 34 TYR n 1 35 ASP n 1 36 ILE n 1 37 ILE n 1 38 GLU n 1 39 CYS n 1 40 VAL n 1 41 LEU n 1 42 ARG n 1 43 ALA n 1 44 ASN n 1 45 SER n 1 46 GLY n 1 47 ALA n 1 48 VAL n 1 49 ASP n 1 50 ALA n 1 51 THR n 1 52 ILE n 1 53 ASP n 1 54 GLN n 1 55 LEU n 1 56 LEU n 1 57 GLN n 1 58 MET n 1 59 ASN n 1 60 LEU n 1 61 GLU n 1 62 SER n 1 63 GLY n 1 64 PRO n 1 65 SER n 1 66 SER n 1 67 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CUEDC1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-16 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUED1_HUMAN _struct_ref.pdbx_db_accession Q9NWM3 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DHY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 61 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NWM3 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 90 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 61 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DHY GLY A 1 ? UNP Q9NWM3 ? ? 'cloning artifact' 1 1 1 2DHY SER A 2 ? UNP Q9NWM3 ? ? 'cloning artifact' 2 2 1 2DHY SER A 3 ? UNP Q9NWM3 ? ? 'cloning artifact' 3 3 1 2DHY GLY A 4 ? UNP Q9NWM3 ? ? 'cloning artifact' 4 4 1 2DHY SER A 5 ? UNP Q9NWM3 ? ? 'cloning artifact' 5 5 1 2DHY SER A 6 ? UNP Q9NWM3 ? ? 'cloning artifact' 6 6 1 2DHY GLY A 7 ? UNP Q9NWM3 ? ? 'cloning artifact' 7 7 1 2DHY SER A 62 ? UNP Q9NWM3 ? ? 'cloning artifact' 62 8 1 2DHY GLY A 63 ? UNP Q9NWM3 ? ? 'cloning artifact' 63 9 1 2DHY PRO A 64 ? UNP Q9NWM3 ? ? 'cloning artifact' 64 10 1 2DHY SER A 65 ? UNP Q9NWM3 ? ? 'cloning artifact' 65 11 1 2DHY SER A 66 ? UNP Q9NWM3 ? ? 'cloning artifact' 66 12 1 2DHY GLY A 67 ? UNP Q9NWM3 ? ? 'cloning artifact' 67 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.40mM CUE domain U-15N, 13C; 20mM d-Tris-HCl (pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90%H2O; 10%D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DHY _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DHY _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DHY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9732 'Kobayashi, N.' 4 'structure solution' CYANA 1.0.8 'Guntert, P.' 5 refinement CYANA 1.0.8 'Guntert, P.' 6 # _exptl.entry_id 2DHY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DHY _struct.title 'Solution Structure of the CUE Domain in the Human CUE Domain Containing Protein 1 (CUEDC1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DHY _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text ;CUE domain containing protein 1 (CUEDC1), CUE domain, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, IMMUNE SYSTEM ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 18 ? PHE A 29 ? PHE A 18 PHE A 29 1 ? 12 HELX_P HELX_P2 2 ASP A 33 ? SER A 45 ? ASP A 33 SER A 45 1 ? 13 HELX_P HELX_P3 3 ALA A 47 ? GLU A 61 ? ALA A 47 GLU A 61 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DHY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DHY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 MET 28 28 28 MET MET A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 MET 32 32 32 MET MET A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 CYS 39 39 39 CYS CYS A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 SER 45 45 45 SER SER A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 GLN 54 54 54 GLN GLN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 PRO 64 64 64 PRO PRO A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-27 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A CYS 39 ? ? H A ALA 43 ? ? 1.51 2 1 O A ALA 47 ? ? H A THR 51 ? ? 1.53 3 1 O A VAL 40 ? ? H A ASN 44 ? ? 1.54 4 1 O A PHE 25 ? ? H A PHE 29 ? ? 1.60 5 1 O A ILE 52 ? ? H A LEU 56 ? ? 1.60 6 2 O A PHE 25 ? ? H A PHE 29 ? ? 1.51 7 2 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 8 2 O A ALA 47 ? ? H A THR 51 ? ? 1.55 9 3 O A ALA 47 ? ? H A THR 51 ? ? 1.51 10 3 O A CYS 39 ? ? H A ALA 43 ? ? 1.54 11 3 O A PHE 25 ? ? H A PHE 29 ? ? 1.54 12 3 O A MET 22 ? ? H A LYS 26 ? ? 1.58 13 4 O A PHE 25 ? ? H A PHE 29 ? ? 1.53 14 4 O A ALA 47 ? ? H A THR 51 ? ? 1.55 15 4 O A VAL 40 ? ? H A ASN 44 ? ? 1.55 16 4 O A CYS 39 ? ? H A ALA 43 ? ? 1.55 17 5 O A ALA 47 ? ? H A THR 51 ? ? 1.51 18 5 O A PHE 25 ? ? H A PHE 29 ? ? 1.55 19 5 O A GLN 57 ? ? H A GLU 61 ? ? 1.55 20 5 O A CYS 39 ? ? H A ALA 43 ? ? 1.56 21 6 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 22 6 O A VAL 40 ? ? H A ASN 44 ? ? 1.57 23 6 O A PHE 25 ? ? H A PHE 29 ? ? 1.57 24 6 O A ALA 47 ? ? H A THR 51 ? ? 1.57 25 7 O A VAL 40 ? ? H A ASN 44 ? ? 1.50 26 7 O A ALA 47 ? ? H A THR 51 ? ? 1.53 27 7 O A CYS 39 ? ? H A ALA 43 ? ? 1.53 28 7 O A PHE 25 ? ? H A PHE 29 ? ? 1.55 29 8 O A ALA 47 ? ? H A THR 51 ? ? 1.50 30 8 O A CYS 39 ? ? H A ALA 43 ? ? 1.53 31 9 O A ALA 47 ? ? H A THR 51 ? ? 1.50 32 9 O A PHE 25 ? ? H A PHE 29 ? ? 1.54 33 9 O A CYS 39 ? ? H A ALA 43 ? ? 1.56 34 10 O A ALA 47 ? ? H A THR 51 ? ? 1.50 35 10 O A PHE 25 ? ? H A PHE 29 ? ? 1.50 36 10 O A VAL 40 ? ? H A ASN 44 ? ? 1.51 37 10 O A ILE 52 ? ? H A LEU 56 ? ? 1.51 38 10 O A MET 22 ? ? H A LYS 26 ? ? 1.52 39 10 O A CYS 39 ? ? H A ALA 43 ? ? 1.55 40 11 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 41 11 O A PHE 25 ? ? H A PHE 29 ? ? 1.55 42 11 O A ALA 47 ? ? H A THR 51 ? ? 1.55 43 12 O A LEU 56 ? ? H A LEU 60 ? ? 1.52 44 12 O A ALA 47 ? ? H A THR 51 ? ? 1.53 45 12 O A CYS 39 ? ? H A ALA 43 ? ? 1.54 46 12 O A GLN 57 ? ? H A GLU 61 ? ? 1.55 47 12 O A PHE 25 ? ? H A PHE 29 ? ? 1.57 48 13 O A ALA 47 ? ? H A THR 51 ? ? 1.51 49 13 O A CYS 39 ? ? H A ALA 43 ? ? 1.53 50 14 O A ALA 47 ? ? H A THR 51 ? ? 1.50 51 14 O A PHE 25 ? ? H A PHE 29 ? ? 1.51 52 14 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 53 14 O A VAL 40 ? ? HD21 A ASN 44 ? ? 1.56 54 15 O A ILE 52 ? ? H A LEU 56 ? ? 1.49 55 15 O A VAL 40 ? ? H A ASN 44 ? ? 1.50 56 15 O A ALA 47 ? ? H A THR 51 ? ? 1.50 57 15 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 58 15 O A PHE 25 ? ? H A PHE 29 ? ? 1.54 59 15 O A ASP 35 ? ? H A CYS 39 ? ? 1.58 60 16 O A ALA 47 ? ? H A THR 51 ? ? 1.50 61 16 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 62 17 O A VAL 40 ? ? H A ASN 44 ? ? 1.47 63 17 O A PHE 25 ? ? H A PHE 29 ? ? 1.51 64 17 O A MET 22 ? ? H A LYS 26 ? ? 1.53 65 17 O A ALA 47 ? ? H A THR 51 ? ? 1.55 66 17 O A CYS 39 ? ? H A ALA 43 ? ? 1.56 67 18 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 68 18 O A ALA 47 ? ? H A THR 51 ? ? 1.54 69 18 O A ALA 47 ? ? HG1 A THR 51 ? ? 1.54 70 18 O A PHE 25 ? ? H A PHE 29 ? ? 1.57 71 18 O A LEU 56 ? ? H A LEU 60 ? ? 1.58 72 18 O A LEU 55 ? ? H A ASN 59 ? ? 1.59 73 18 O A VAL 40 ? ? HD21 A ASN 44 ? ? 1.59 74 19 O A ALA 47 ? ? HG1 A THR 51 ? ? 1.52 75 19 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 76 19 O A ALA 47 ? ? H A THR 51 ? ? 1.52 77 19 O A PHE 25 ? ? H A PHE 29 ? ? 1.57 78 19 O A VAL 40 ? ? H A ASN 44 ? ? 1.57 79 19 O A ASP 33 ? ? H A ILE 37 ? ? 1.59 80 20 O A PHE 25 ? ? H A PHE 29 ? ? 1.49 81 20 O A ALA 47 ? ? H A THR 51 ? ? 1.50 82 20 O A VAL 40 ? ? H A ASN 44 ? ? 1.51 83 20 O A CYS 39 ? ? H A ALA 43 ? ? 1.52 84 20 O A ASP 33 ? ? H A ILE 37 ? ? 1.56 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? 53.11 95.45 2 1 VAL A 13 ? ? -136.86 -52.24 3 1 ARG A 14 ? ? 39.72 46.13 4 1 LEU A 16 ? ? 64.09 165.79 5 1 SER A 45 ? ? 81.21 78.59 6 1 ALA A 47 ? ? -167.48 95.19 7 1 THR A 51 ? ? -39.60 -29.44 8 1 ILE A 52 ? ? -69.20 -72.10 9 1 GLN A 54 ? ? -55.83 -71.29 10 1 GLU A 61 ? ? 69.90 140.62 11 1 SER A 62 ? ? -39.89 106.18 12 1 SER A 66 ? ? 64.57 145.59 13 2 SER A 2 ? ? 45.60 88.95 14 2 SER A 3 ? ? 56.01 168.66 15 2 SER A 6 ? ? 67.98 143.25 16 2 ALA A 10 ? ? -163.86 57.65 17 2 GLN A 12 ? ? 39.85 43.44 18 2 ARG A 15 ? ? 79.82 152.49 19 2 LEU A 16 ? ? 69.36 166.78 20 2 SER A 45 ? ? 85.64 83.27 21 2 ALA A 47 ? ? -160.50 99.21 22 2 GLN A 54 ? ? -60.14 -71.16 23 2 GLU A 61 ? ? 64.83 75.01 24 2 SER A 62 ? ? -166.65 -58.71 25 3 SER A 5 ? ? -172.19 -59.24 26 3 SER A 6 ? ? 61.03 116.38 27 3 VAL A 13 ? ? 55.26 96.98 28 3 LEU A 16 ? ? -140.58 -71.69 29 3 SER A 45 ? ? 71.23 86.65 30 3 GLN A 54 ? ? -53.46 -70.22 31 3 GLU A 61 ? ? 65.21 139.40 32 3 SER A 62 ? ? -69.59 98.01 33 4 SER A 2 ? ? -107.23 -61.12 34 4 SER A 3 ? ? -175.94 121.24 35 4 SER A 5 ? ? 59.61 102.10 36 4 ARG A 8 ? ? 58.63 160.55 37 4 VAL A 13 ? ? -151.40 -46.78 38 4 LEU A 16 ? ? 58.60 172.29 39 4 PHE A 18 ? ? -113.99 58.11 40 4 SER A 45 ? ? 70.10 87.50 41 4 ALA A 47 ? ? -167.91 94.07 42 4 GLN A 54 ? ? -51.78 -70.97 43 4 GLU A 61 ? ? -65.17 90.25 44 5 SER A 2 ? ? -173.14 -59.26 45 5 SER A 3 ? ? -154.86 -57.66 46 5 ARG A 15 ? ? 69.53 -60.34 47 5 LEU A 16 ? ? 50.24 -177.80 48 5 ALA A 47 ? ? -167.87 100.96 49 5 THR A 51 ? ? -39.41 -30.05 50 5 GLN A 54 ? ? -65.90 -71.11 51 5 SER A 65 ? ? -160.10 102.54 52 5 SER A 66 ? ? -170.15 -58.72 53 6 SER A 2 ? ? 57.61 81.02 54 6 SER A 3 ? ? 47.86 95.96 55 6 GLN A 12 ? ? 67.80 -67.63 56 6 LEU A 16 ? ? -52.54 171.41 57 6 PHE A 18 ? ? -157.46 -53.21 58 6 SER A 45 ? ? 83.09 83.01 59 6 ASP A 53 ? ? -39.60 -39.85 60 6 LEU A 60 ? ? 39.99 33.87 61 6 SER A 62 ? ? -171.19 -60.00 62 7 ARG A 8 ? ? 60.34 165.75 63 7 ALA A 10 ? ? -164.26 73.59 64 7 LEU A 16 ? ? 61.16 166.29 65 7 SER A 45 ? ? 74.21 86.99 66 7 ILE A 52 ? ? -72.92 -71.15 67 7 GLN A 54 ? ? -55.90 -70.27 68 8 SER A 2 ? ? -161.60 89.36 69 8 SER A 3 ? ? 52.05 91.78 70 8 SER A 5 ? ? 63.40 83.56 71 8 SER A 6 ? ? -120.77 -59.26 72 8 GLN A 12 ? ? -152.08 89.11 73 8 VAL A 13 ? ? -147.90 -47.22 74 8 ARG A 14 ? ? 62.52 127.70 75 8 LEU A 16 ? ? 72.98 165.55 76 8 GLU A 17 ? ? 57.46 166.37 77 8 PHE A 18 ? ? 55.77 -86.23 78 8 SER A 45 ? ? 77.39 79.55 79 8 GLN A 54 ? ? -63.73 -71.23 80 8 LEU A 60 ? ? 39.78 32.93 81 8 SER A 65 ? ? -146.78 -61.87 82 9 SER A 2 ? ? 63.10 -80.70 83 9 SER A 3 ? ? 66.13 134.62 84 9 SER A 5 ? ? 41.24 90.65 85 9 ARG A 8 ? ? 62.26 157.22 86 9 ALA A 10 ? ? 57.35 91.68 87 9 GLN A 12 ? ? -164.56 104.02 88 9 LEU A 16 ? ? -142.87 -71.14 89 9 PHE A 18 ? ? -151.43 62.71 90 9 SER A 45 ? ? 63.88 79.22 91 9 ALA A 47 ? ? -170.30 98.26 92 9 GLN A 54 ? ? -62.71 -71.16 93 9 LEU A 56 ? ? -55.92 -70.45 94 9 GLU A 61 ? ? 63.45 81.47 95 9 SER A 62 ? ? 44.22 85.60 96 9 SER A 65 ? ? 62.20 108.28 97 10 SER A 5 ? ? -150.21 -59.52 98 10 SER A 6 ? ? 54.73 169.15 99 10 ARG A 8 ? ? -177.60 148.74 100 10 LEU A 16 ? ? 54.54 172.47 101 10 PHE A 18 ? ? -116.55 51.61 102 10 SER A 45 ? ? 66.99 77.46 103 10 ALA A 47 ? ? -170.62 92.55 104 10 GLN A 54 ? ? -48.76 -71.13 105 10 GLU A 61 ? ? 69.26 -62.96 106 10 SER A 65 ? ? -171.77 148.77 107 11 SER A 5 ? ? -154.90 79.64 108 11 ARG A 15 ? ? 61.38 140.17 109 11 SER A 45 ? ? 76.65 80.70 110 11 ALA A 47 ? ? -161.77 99.45 111 11 GLN A 54 ? ? -50.13 -71.22 112 11 GLU A 61 ? ? 62.17 71.14 113 11 SER A 65 ? ? 65.60 89.53 114 12 ALA A 10 ? ? -140.77 -66.38 115 12 VAL A 13 ? ? -104.19 -62.45 116 12 ARG A 14 ? ? -152.99 59.31 117 12 LEU A 16 ? ? 77.28 -71.98 118 12 PHE A 18 ? ? -165.01 -55.84 119 12 SER A 45 ? ? 73.20 79.84 120 12 ALA A 47 ? ? -173.70 93.47 121 12 THR A 51 ? ? -39.26 -32.18 122 12 GLN A 54 ? ? -64.18 -71.38 123 12 SER A 62 ? ? 178.26 -57.52 124 12 SER A 65 ? ? -179.77 -57.33 125 13 SER A 2 ? ? 62.69 136.34 126 13 SER A 5 ? ? 63.27 121.03 127 13 SER A 6 ? ? 42.69 86.97 128 13 ARG A 8 ? ? 56.33 163.54 129 13 ARG A 14 ? ? 65.40 125.33 130 13 LEU A 16 ? ? -99.59 -72.47 131 13 GLU A 17 ? ? -40.36 150.16 132 13 SER A 45 ? ? 75.64 82.76 133 13 ALA A 47 ? ? -164.08 93.35 134 13 GLU A 61 ? ? 55.49 71.99 135 13 SER A 62 ? ? 67.24 158.10 136 14 ARG A 11 ? ? -122.34 -55.33 137 14 VAL A 13 ? ? 62.46 117.59 138 14 ARG A 15 ? ? -47.00 160.40 139 14 PHE A 18 ? ? -91.76 -63.18 140 14 MET A 32 ? ? -54.78 171.21 141 14 SER A 45 ? ? 85.09 86.12 142 14 GLN A 54 ? ? -61.06 -70.31 143 14 LEU A 56 ? ? -57.56 -71.89 144 14 GLU A 61 ? ? 60.79 73.25 145 14 SER A 65 ? ? -127.69 -64.22 146 15 SER A 2 ? ? -162.63 118.98 147 15 SER A 3 ? ? 62.34 -92.17 148 15 ALA A 10 ? ? -142.67 -65.92 149 15 ARG A 14 ? ? 73.73 -57.83 150 15 ARG A 15 ? ? 55.12 94.54 151 15 PHE A 18 ? ? -114.55 59.58 152 15 SER A 45 ? ? 85.34 78.63 153 15 GLN A 54 ? ? -42.45 -71.50 154 15 LEU A 56 ? ? -45.04 -70.26 155 15 GLU A 61 ? ? 63.92 126.18 156 15 SER A 62 ? ? 54.54 171.48 157 15 SER A 65 ? ? -146.06 -62.29 158 15 SER A 66 ? ? 63.81 123.89 159 16 SER A 5 ? ? -168.09 -59.38 160 16 ALA A 10 ? ? 63.29 133.38 161 16 GLN A 12 ? ? -171.74 146.73 162 16 ARG A 14 ? ? -164.93 -58.98 163 16 ARG A 15 ? ? -177.98 111.47 164 16 PHE A 18 ? ? -147.62 -46.45 165 16 SER A 45 ? ? 84.94 79.03 166 16 ALA A 47 ? ? -167.67 95.36 167 16 GLN A 54 ? ? -65.48 -71.20 168 16 LEU A 60 ? ? -90.97 -149.91 169 16 GLU A 61 ? ? 171.37 78.08 170 16 SER A 62 ? ? -174.25 137.76 171 16 SER A 65 ? ? -104.66 74.25 172 17 SER A 5 ? ? -140.26 -58.46 173 17 ALA A 10 ? ? 43.73 74.62 174 17 ARG A 15 ? ? 178.85 -56.86 175 17 LEU A 16 ? ? -59.57 -86.72 176 17 GLU A 17 ? ? 82.70 141.91 177 17 SER A 45 ? ? 66.52 80.63 178 17 GLN A 54 ? ? -66.03 -71.29 179 18 SER A 5 ? ? 61.29 161.45 180 18 SER A 6 ? ? -152.23 -53.91 181 18 ARG A 11 ? ? 67.51 100.19 182 18 GLN A 12 ? ? -165.02 85.69 183 18 ARG A 14 ? ? -132.58 -54.83 184 18 LEU A 16 ? ? 59.76 155.77 185 18 SER A 45 ? ? 85.19 82.23 186 18 GLN A 54 ? ? -55.19 -71.17 187 18 GLU A 61 ? ? 54.24 99.22 188 19 ARG A 8 ? ? 58.09 161.03 189 19 ARG A 11 ? ? 177.48 131.80 190 19 LEU A 16 ? ? 49.98 -177.69 191 19 PHE A 18 ? ? 57.36 -83.16 192 19 SER A 45 ? ? 79.87 85.17 193 19 ALA A 47 ? ? -164.02 96.28 194 19 GLU A 61 ? ? 65.91 64.20 195 19 SER A 62 ? ? 70.22 112.17 196 19 SER A 66 ? ? -120.57 -59.19 197 20 SER A 2 ? ? -155.36 -56.87 198 20 SER A 3 ? ? -50.89 172.09 199 20 SER A 6 ? ? -176.61 90.95 200 20 ARG A 8 ? ? 58.91 156.61 201 20 GLN A 12 ? ? 49.76 71.62 202 20 ARG A 14 ? ? 50.96 89.25 203 20 ARG A 15 ? ? -173.29 131.49 204 20 GLU A 17 ? ? -131.16 -63.66 205 20 PHE A 18 ? ? -177.34 -50.98 206 20 SER A 45 ? ? 82.27 81.45 207 20 ALA A 47 ? ? -161.71 93.83 208 20 ASP A 49 ? ? -39.82 -37.18 209 20 ILE A 52 ? ? -74.38 -70.54 210 20 GLN A 54 ? ? -53.92 -71.12 211 20 MET A 58 ? ? -38.23 -36.64 212 20 SER A 62 ? ? -176.21 -60.45 213 20 SER A 65 ? ? 62.52 158.31 #