data_2DIM # _entry.id 2DIM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DIM pdb_00002dim 10.2210/pdb2dim/pdb RCSB RCSB025455 ? ? WWPDB D_1000025455 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2DIN _pdbx_database_related.details 'The different fragment of the same protein' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DIM _pdbx_database_status.recvd_initial_deposition_date 2006-03-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Cell division cycle 5-like protein' _entity.formula_weight 7826.845 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Myb_DNA-binding domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Cdc5-like protein, Pombe cdc5-related protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSSG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LYS n 1 9 GLY n 1 10 GLY n 1 11 VAL n 1 12 TRP n 1 13 ARG n 1 14 ASN n 1 15 THR n 1 16 GLU n 1 17 ASP n 1 18 GLU n 1 19 ILE n 1 20 LEU n 1 21 LYS n 1 22 ALA n 1 23 ALA n 1 24 VAL n 1 25 MET n 1 26 LYS n 1 27 TYR n 1 28 GLY n 1 29 LYS n 1 30 ASN n 1 31 GLN n 1 32 TRP n 1 33 SER n 1 34 ARG n 1 35 ILE n 1 36 ALA n 1 37 SER n 1 38 LEU n 1 39 LEU n 1 40 HIS n 1 41 ARG n 1 42 LYS n 1 43 SER n 1 44 ALA n 1 45 LYS n 1 46 GLN n 1 47 CYS n 1 48 LYS n 1 49 ALA n 1 50 ARG n 1 51 TRP n 1 52 TYR n 1 53 GLU n 1 54 TRP n 1 55 LEU n 1 56 ASP n 1 57 PRO n 1 58 SER n 1 59 ILE n 1 60 LYS n 1 61 LYS n 1 62 THR n 1 63 GLU n 1 64 TRP n 1 65 SER n 1 66 GLY n 1 67 PRO n 1 68 SER n 1 69 SER n 1 70 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene CDC5L _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050822-18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CDC5L_HUMAN _struct_ref.pdbx_db_accession Q99459 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEW _struct_ref.pdbx_align_begin 7 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DIM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99459 _struct_ref_seq.db_align_beg 7 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 63 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 64 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DIM GLY A 1 ? UNP Q99459 ? ? 'cloning artifact' 1 1 1 2DIM SER A 2 ? UNP Q99459 ? ? 'cloning artifact' 2 2 1 2DIM SER A 3 ? UNP Q99459 ? ? 'cloning artifact' 3 3 1 2DIM GLY A 4 ? UNP Q99459 ? ? 'cloning artifact' 4 4 1 2DIM SER A 5 ? UNP Q99459 ? ? 'cloning artifact' 5 5 1 2DIM SER A 6 ? UNP Q99459 ? ? 'cloning artifact' 6 6 1 2DIM GLY A 7 ? UNP Q99459 ? ? 'cloning artifact' 7 7 1 2DIM SER A 65 ? UNP Q99459 ? ? 'cloning artifact' 65 8 1 2DIM GLY A 66 ? UNP Q99459 ? ? 'cloning artifact' 66 9 1 2DIM PRO A 67 ? UNP Q99459 ? ? 'cloning artifact' 67 10 1 2DIM SER A 68 ? UNP Q99459 ? ? 'cloning artifact' 68 11 1 2DIM SER A 69 ? UNP Q99459 ? ? 'cloning artifact' 69 12 1 2DIM GLY A 70 ? UNP Q99459 ? ? 'cloning artifact' 70 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.19mM Myb_DNA-binding domain U-15N, 13C; 20mM d-Tris HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DIM _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DIM _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DIM _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9736 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DIM _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DIM _struct.title 'Solution structure of the Myb_DNA-binding domain of human Cell division cycle 5-like protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DIM _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text ;Myb_DNA-binding domain, Cell cycle, DNA binding, Spliceosome, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA binding protein ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 13 ? TYR A 27 ? ARG A 13 TYR A 27 1 ? 15 HELX_P HELX_P2 2 GLN A 31 ? LEU A 39 ? GLN A 31 LEU A 39 1 ? 9 HELX_P HELX_P3 3 SER A 43 ? TRP A 54 ? SER A 43 TRP A 54 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DIM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DIM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 TRP 32 32 32 TRP TRP A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 HIS 40 40 40 HIS HIS A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 GLN 46 46 46 GLN GLN A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 TRP 51 51 51 TRP TRP A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 TRP 54 54 54 TRP TRP A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 GLY 70 70 70 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-03 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -128.92 -54.54 2 1 VAL A 11 ? ? -58.87 176.37 3 1 LYS A 29 ? ? -85.74 43.22 4 1 ASN A 30 ? ? -131.29 -39.29 5 1 GLN A 31 ? ? -82.91 38.11 6 1 ARG A 41 ? ? 71.26 35.27 7 1 TRP A 51 ? ? -63.62 -71.57 8 1 SER A 58 ? ? -38.86 -39.34 9 2 GLN A 31 ? ? -85.07 30.32 10 2 TRP A 51 ? ? -66.58 -73.12 11 2 ASP A 56 ? ? -173.37 140.13 12 2 ILE A 59 ? ? -37.90 141.13 13 2 TRP A 64 ? ? -57.77 108.08 14 2 SER A 68 ? ? -80.76 43.80 15 3 SER A 6 ? ? -119.56 79.91 16 3 LYS A 29 ? ? -80.72 43.22 17 3 ASN A 30 ? ? -133.22 -38.12 18 3 GLN A 31 ? ? -83.68 49.50 19 3 TRP A 51 ? ? -68.59 -70.33 20 3 ASP A 56 ? ? -170.47 139.81 21 3 LYS A 60 ? ? -91.51 44.73 22 3 GLU A 63 ? ? 37.82 38.59 23 4 SER A 5 ? ? -131.22 -43.37 24 4 LYS A 8 ? ? -132.33 -42.67 25 4 GLN A 31 ? ? -85.76 37.29 26 4 ILE A 59 ? ? -39.16 147.65 27 4 GLU A 63 ? ? -47.67 165.85 28 5 SER A 2 ? ? -96.75 42.20 29 5 SER A 5 ? ? -128.36 -50.76 30 5 SER A 6 ? ? -94.34 41.95 31 5 LYS A 29 ? ? -84.20 37.66 32 5 ASN A 30 ? ? -130.30 -31.41 33 5 GLN A 31 ? ? -88.64 37.93 34 5 TRP A 51 ? ? -66.80 -74.22 35 5 ASP A 56 ? ? -172.45 139.56 36 5 LYS A 60 ? ? -91.34 44.29 37 5 LYS A 61 ? ? -104.17 41.52 38 5 TRP A 64 ? ? -37.56 118.77 39 6 LYS A 29 ? ? -81.67 41.27 40 6 ASN A 30 ? ? -132.05 -34.53 41 6 GLN A 31 ? ? -85.88 40.72 42 6 TRP A 51 ? ? -63.24 -71.89 43 6 ASP A 56 ? ? -173.33 140.28 44 6 ILE A 59 ? ? -37.69 138.24 45 6 LYS A 61 ? ? -131.80 -51.35 46 6 PRO A 67 ? ? -69.75 2.72 47 7 SER A 5 ? ? -106.80 -60.70 48 7 SER A 6 ? ? 34.52 42.33 49 7 GLN A 31 ? ? -82.81 45.74 50 7 ASP A 56 ? ? -170.72 137.02 51 7 ILE A 59 ? ? -39.77 138.11 52 8 GLN A 31 ? ? -86.47 45.58 53 8 TRP A 51 ? ? -63.58 -70.05 54 8 ASP A 56 ? ? -170.64 141.72 55 8 ILE A 59 ? ? -37.51 136.82 56 8 TRP A 64 ? ? -94.17 41.83 57 8 PRO A 67 ? ? -69.71 93.90 58 9 SER A 3 ? ? 34.87 42.15 59 9 LYS A 26 ? ? -91.96 -62.05 60 9 LYS A 29 ? ? -90.06 42.76 61 9 ASN A 30 ? ? -132.79 -33.17 62 9 GLN A 31 ? ? -91.09 38.25 63 9 TRP A 51 ? ? -74.01 -70.62 64 9 ASP A 56 ? ? -171.55 139.91 65 9 SER A 58 ? ? -39.78 -35.14 66 10 SER A 2 ? ? 36.32 43.85 67 10 GLN A 31 ? ? -83.71 39.06 68 10 TRP A 51 ? ? -66.11 -73.03 69 10 ASP A 56 ? ? -173.75 139.94 70 10 SER A 58 ? ? -39.40 -37.53 71 11 VAL A 11 ? ? -174.88 145.97 72 11 LYS A 29 ? ? -91.23 35.99 73 11 GLN A 31 ? ? -91.41 38.62 74 11 ARG A 41 ? ? 40.08 25.85 75 11 TRP A 51 ? ? -68.62 -71.86 76 11 ASP A 56 ? ? -171.44 143.14 77 11 LYS A 61 ? ? -128.33 -58.48 78 11 SER A 68 ? ? -37.28 137.02 79 12 VAL A 11 ? ? -174.96 141.01 80 12 LYS A 29 ? ? -91.70 37.58 81 12 GLN A 31 ? ? -85.25 42.38 82 12 ASP A 56 ? ? -174.96 139.22 83 12 ILE A 59 ? ? -35.30 135.56 84 12 TRP A 64 ? ? -50.98 106.91 85 12 SER A 65 ? ? -165.66 113.69 86 12 SER A 69 ? ? -36.45 139.49 87 13 LYS A 29 ? ? -88.83 30.68 88 13 GLN A 31 ? ? -89.66 40.32 89 13 TRP A 51 ? ? -63.73 -70.90 90 13 ILE A 59 ? ? -36.31 145.31 91 13 LYS A 60 ? ? -98.41 33.38 92 13 TRP A 64 ? ? -49.55 103.11 93 13 PRO A 67 ? ? -69.73 0.88 94 13 SER A 68 ? ? -34.52 121.47 95 13 SER A 69 ? ? -37.29 108.43 96 14 LYS A 29 ? ? -89.59 36.05 97 14 GLN A 31 ? ? -86.58 39.49 98 14 TRP A 51 ? ? -66.86 -70.74 99 14 LYS A 61 ? ? 34.63 44.94 100 14 THR A 62 ? ? -36.12 -30.66 101 15 SER A 6 ? ? -34.87 140.01 102 15 LYS A 8 ? ? -50.52 98.66 103 15 GLN A 31 ? ? -87.13 37.32 104 15 ILE A 59 ? ? -35.37 144.31 105 15 LYS A 60 ? ? -80.57 42.79 106 16 LYS A 29 ? ? -82.64 40.26 107 16 ASN A 30 ? ? -132.07 -37.09 108 16 GLN A 31 ? ? -85.30 39.10 109 16 TRP A 51 ? ? -69.55 -73.15 110 16 ASP A 56 ? ? -171.09 140.42 111 16 ILE A 59 ? ? -35.52 143.57 112 16 LYS A 61 ? ? -99.02 38.59 113 16 THR A 62 ? ? -80.98 42.78 114 17 SER A 6 ? ? -96.55 39.77 115 17 LYS A 29 ? ? -84.26 39.81 116 17 ASN A 30 ? ? -133.15 -36.69 117 17 GLN A 31 ? ? -84.15 40.14 118 17 TRP A 51 ? ? -70.24 -70.41 119 17 ASP A 56 ? ? -174.96 139.79 120 17 ILE A 59 ? ? -37.11 144.82 121 17 LYS A 60 ? ? -83.03 39.29 122 17 TRP A 64 ? ? -66.94 83.52 123 18 LYS A 26 ? ? -90.10 -63.80 124 18 LYS A 60 ? ? -67.71 91.55 125 19 LYS A 29 ? ? -84.89 36.36 126 19 ASN A 30 ? ? -130.97 -32.26 127 19 GLN A 31 ? ? -86.26 39.93 128 19 TRP A 51 ? ? -64.36 -71.84 129 19 ASP A 56 ? ? -173.92 140.91 130 19 PRO A 67 ? ? -69.73 -179.83 131 20 VAL A 11 ? ? -34.84 152.37 132 20 TRP A 51 ? ? -66.07 -72.93 133 20 ASP A 56 ? ? -174.84 140.81 134 20 SER A 58 ? ? -38.28 -37.89 #