HEADER ISOMERASE 30-MAR-06 2DIO TITLE CRYSTAL STRUCTURE OF THE ALLENE OXIDE CYCLASE 2 WITH BOUND INHIBITOR TITLE 2 VERNOLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLENE OXIDE CYCLASE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: ALLENE OXIDE CYCLASE 2; COMPND 5 EC: 5.3.99.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G25770; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS BETA BARREL, INHIBITOR COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.HOFMANN,F.SCHALLER,P.ZERBE REVDAT 6 15-NOV-23 2DIO 1 REMARK REVDAT 5 25-OCT-23 2DIO 1 REMARK SEQADV HETSYN LINK REVDAT 4 13-JUL-11 2DIO 1 VERSN REVDAT 3 24-FEB-09 2DIO 1 VERSN REVDAT 2 26-DEC-06 2DIO 1 JRNL REVDAT 1 21-NOV-06 2DIO 0 JRNL AUTH E.HOFMANN,P.ZERBE,F.SCHALLER JRNL TITL THE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA ALLENE OXIDE JRNL TITL 2 CYCLASE: INSIGHTS INTO THE OXYLIPIN CYCLIZATION REACTION JRNL REF PLANT CELL V. 18 3201 2006 JRNL REFN ISSN 1040-4651 JRNL PMID 17085685 JRNL DOI 10.1105/TPC.106.043984 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 70876 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4092 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.336 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4289 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5819 ; 1.784 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 531 ; 6.933 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;32.871 ;24.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 701 ;14.275 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ; 9.037 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.234 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3249 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1982 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2916 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 324 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.168 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.144 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2690 ; 1.125 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4227 ; 1.693 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1826 ; 2.939 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1583 ; 4.134 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; NULL REMARK 200 RADIATION SOURCE : ROTATING ANODE; NULL REMARK 200 BEAMLINE : NULL; NULL REMARK 200 X-RAY GENERATOR MODEL : CU K-ALPHA; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54; NULL REMARK 200 MONOCHROMATOR : MONTEL MIRROR; NULL REMARK 200 OPTICS : MIRRORS; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70876 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34500 REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2BRJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG3350, 200MM NACL, 100MM REMARK 280 PHOSPHATE CITRATE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.95000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.95000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A TRIMER CHAINS A,B,C REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 ARG A 11 REMARK 465 SER A 12 REMARK 465 PRO A 13 REMARK 465 SER A 14 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 ARG B 11 REMARK 465 SER B 12 REMARK 465 PRO B 13 REMARK 465 SER B 14 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 ARG C 11 REMARK 465 SER C 12 REMARK 465 PRO C 13 REMARK 465 SER C 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 588 O HOH C 616 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 18 CB GLU A 18 CG -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 84 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 LEU B 35 CB - CG - CD1 ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 84 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 84 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 93 52.45 -119.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EOD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BRJ RELATED DB: PDB REMARK 900 HIGHER RESOLUTION STRUCTURE OF SEMET LABELLED AOC2 REMARK 900 RELATED ID: 2GIN RELATED DB: PDB REMARK 900 STRUCTURE OF UNLABELLED AOC2 REMARK 900 RELATED ID: 1Z8K RELATED DB: PDB REMARK 900 STRUCTURE OF AOC2 SOLVED BY THE CESG STRUCTURAL GENOMICS CONSORTIUM DBREF 2DIO A 13 188 UNP Q9LS02 AOC2_ARATH 78 253 DBREF 2DIO B 13 188 UNP Q9LS02 AOC2_ARATH 78 253 DBREF 2DIO C 13 188 UNP Q9LS02 AOC2_ARATH 78 253 SEQADV 2DIO MET A 1 UNP Q9LS02 INITIATING METHIONINE SEQADV 2DIO ARG A 2 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO GLY A 3 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER A 4 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO HIS A 5 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS A 6 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS A 7 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS A 8 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS A 9 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS A 10 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO ARG A 11 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER A 12 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO MSE A 42 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQADV 2DIO MET B 1 UNP Q9LS02 INITIATING METHIONINE SEQADV 2DIO ARG B 2 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO GLY B 3 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER B 4 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO HIS B 5 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS B 6 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS B 7 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS B 8 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS B 9 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS B 10 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO ARG B 11 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER B 12 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO MSE B 42 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQADV 2DIO MET C 1 UNP Q9LS02 INITIATING METHIONINE SEQADV 2DIO ARG C 2 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO GLY C 3 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER C 4 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO HIS C 5 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS C 6 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS C 7 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS C 8 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS C 9 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO HIS C 10 UNP Q9LS02 EXPRESSION TAG SEQADV 2DIO ARG C 11 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO SER C 12 UNP Q9LS02 CLONING ARTIFACT SEQADV 2DIO MSE C 42 UNP Q9LS02 MET 107 MODIFIED RESIDUE SEQRES 1 A 188 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ARG SER PRO SEQRES 2 A 188 SER LYS VAL GLN GLU LEU SER VAL TYR GLU ILE ASN GLU SEQRES 3 A 188 LEU ASP ARG HIS SER PRO LYS ILE LEU LYS ASN ALA PHE SEQRES 4 A 188 SER LEU MSE PHE GLY LEU GLY ASP LEU VAL PRO PHE THR SEQRES 5 A 188 ASN LYS LEU TYR THR GLY ASP LEU LYS LYS ARG VAL GLY SEQRES 6 A 188 ILE THR ALA GLY LEU CYS VAL VAL ILE GLU HIS VAL PRO SEQRES 7 A 188 GLU LYS LYS GLY GLU ARG PHE GLU ALA THR TYR SER PHE SEQRES 8 A 188 TYR PHE GLY ASP TYR GLY HIS LEU SER VAL GLN GLY PRO SEQRES 9 A 188 TYR LEU THR TYR GLU ASP SER PHE LEU ALA ILE THR GLY SEQRES 10 A 188 GLY ALA GLY ILE PHE GLU GLY ALA TYR GLY GLN VAL LYS SEQRES 11 A 188 LEU GLN GLN LEU VAL TYR PRO THR LYS LEU PHE TYR THR SEQRES 12 A 188 PHE TYR LEU LYS GLY LEU ALA ASN ASP LEU PRO LEU GLU SEQRES 13 A 188 LEU THR GLY THR PRO VAL PRO PRO SER LYS ASP ILE GLU SEQRES 14 A 188 PRO ALA PRO GLU ALA LYS ALA LEU GLU PRO SER GLY VAL SEQRES 15 A 188 ILE SER ASN TYR THR ASN SEQRES 1 B 188 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ARG SER PRO SEQRES 2 B 188 SER LYS VAL GLN GLU LEU SER VAL TYR GLU ILE ASN GLU SEQRES 3 B 188 LEU ASP ARG HIS SER PRO LYS ILE LEU LYS ASN ALA PHE SEQRES 4 B 188 SER LEU MSE PHE GLY LEU GLY ASP LEU VAL PRO PHE THR SEQRES 5 B 188 ASN LYS LEU TYR THR GLY ASP LEU LYS LYS ARG VAL GLY SEQRES 6 B 188 ILE THR ALA GLY LEU CYS VAL VAL ILE GLU HIS VAL PRO SEQRES 7 B 188 GLU LYS LYS GLY GLU ARG PHE GLU ALA THR TYR SER PHE SEQRES 8 B 188 TYR PHE GLY ASP TYR GLY HIS LEU SER VAL GLN GLY PRO SEQRES 9 B 188 TYR LEU THR TYR GLU ASP SER PHE LEU ALA ILE THR GLY SEQRES 10 B 188 GLY ALA GLY ILE PHE GLU GLY ALA TYR GLY GLN VAL LYS SEQRES 11 B 188 LEU GLN GLN LEU VAL TYR PRO THR LYS LEU PHE TYR THR SEQRES 12 B 188 PHE TYR LEU LYS GLY LEU ALA ASN ASP LEU PRO LEU GLU SEQRES 13 B 188 LEU THR GLY THR PRO VAL PRO PRO SER LYS ASP ILE GLU SEQRES 14 B 188 PRO ALA PRO GLU ALA LYS ALA LEU GLU PRO SER GLY VAL SEQRES 15 B 188 ILE SER ASN TYR THR ASN SEQRES 1 C 188 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ARG SER PRO SEQRES 2 C 188 SER LYS VAL GLN GLU LEU SER VAL TYR GLU ILE ASN GLU SEQRES 3 C 188 LEU ASP ARG HIS SER PRO LYS ILE LEU LYS ASN ALA PHE SEQRES 4 C 188 SER LEU MSE PHE GLY LEU GLY ASP LEU VAL PRO PHE THR SEQRES 5 C 188 ASN LYS LEU TYR THR GLY ASP LEU LYS LYS ARG VAL GLY SEQRES 6 C 188 ILE THR ALA GLY LEU CYS VAL VAL ILE GLU HIS VAL PRO SEQRES 7 C 188 GLU LYS LYS GLY GLU ARG PHE GLU ALA THR TYR SER PHE SEQRES 8 C 188 TYR PHE GLY ASP TYR GLY HIS LEU SER VAL GLN GLY PRO SEQRES 9 C 188 TYR LEU THR TYR GLU ASP SER PHE LEU ALA ILE THR GLY SEQRES 10 C 188 GLY ALA GLY ILE PHE GLU GLY ALA TYR GLY GLN VAL LYS SEQRES 11 C 188 LEU GLN GLN LEU VAL TYR PRO THR LYS LEU PHE TYR THR SEQRES 12 C 188 PHE TYR LEU LYS GLY LEU ALA ASN ASP LEU PRO LEU GLU SEQRES 13 C 188 LEU THR GLY THR PRO VAL PRO PRO SER LYS ASP ILE GLU SEQRES 14 C 188 PRO ALA PRO GLU ALA LYS ALA LEU GLU PRO SER GLY VAL SEQRES 15 C 188 ILE SER ASN TYR THR ASN MODRES 2DIO MSE A 42 MET SELENOMETHIONINE MODRES 2DIO MSE B 42 MET SELENOMETHIONINE MODRES 2DIO MSE C 42 MET SELENOMETHIONINE HET MSE A 42 13 HET MSE B 42 13 HET MSE C 42 13 HET GOL A 503 6 HET GOL A 504 6 HET EOD B 401 21 HET GOL B 502 6 HET GOL C 501 6 HET GOL C 505 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM EOD 11-[(2R,3S)-3-PENTYLOXIRAN-2-YL]UNDECANOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EOD (+-)-CIS-12,13-EPOXY-9(Z)-OCTADECANOIC ACID; LEUKOTOXIN HETSYN 2 EOD B; (+-)-VERNOLIC ACID FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 6 EOD C18 H34 O3 FORMUL 10 HOH *368(H2 O) HELIX 1 1 PRO A 78 LYS A 81 5 4 HELIX 2 2 PRO A 154 THR A 158 5 5 HELIX 3 3 ALA A 171 ALA A 176 1 6 HELIX 4 4 GLU A 178 VAL A 182 5 5 HELIX 5 5 PRO B 78 LYS B 81 5 4 HELIX 6 6 PRO B 154 THR B 158 5 5 HELIX 7 7 ALA B 171 ALA B 176 1 6 HELIX 8 8 GLU B 178 VAL B 182 5 5 HELIX 9 9 PRO C 78 LYS C 81 5 4 HELIX 10 10 PRO C 154 THR C 158 5 5 HELIX 11 11 ALA C 171 ALA C 176 1 6 HELIX 12 12 GLU C 178 VAL C 182 5 5 SHEET 1 A10 LEU A 48 PHE A 51 0 SHEET 2 A10 ARG A 63 VAL A 77 -1 O CYS A 71 N VAL A 49 SHEET 3 A10 GLY A 82 TYR A 92 -1 O TYR A 92 N ILE A 66 SHEET 4 A10 GLY A 97 LEU A 106 -1 O GLY A 103 N ALA A 87 SHEET 5 A10 SER A 111 GLY A 120 -1 O ALA A 114 N GLN A 102 SHEET 6 A10 TYR A 126 VAL A 135 -1 O LEU A 131 N SER A 111 SHEET 7 A10 LYS A 139 LYS A 147 -1 O PHE A 141 N GLN A 132 SHEET 8 A10 GLN A 17 ILE A 24 -1 N LEU A 19 O PHE A 144 SHEET 9 A10 LYS A 54 THR A 57 -1 O TYR A 56 N TYR A 22 SHEET 10 A10 ARG A 63 VAL A 77 -1 O VAL A 64 N LEU A 55 SHEET 1 B10 LEU B 48 PHE B 51 0 SHEET 2 B10 ARG B 63 VAL B 77 -1 O CYS B 71 N VAL B 49 SHEET 3 B10 GLY B 82 TYR B 92 -1 O GLU B 86 N VAL B 72 SHEET 4 B10 GLY B 97 LEU B 106 -1 O GLY B 103 N ALA B 87 SHEET 5 B10 SER B 111 GLY B 120 -1 O GLY B 117 N SER B 100 SHEET 6 B10 TYR B 126 VAL B 135 -1 O LEU B 131 N SER B 111 SHEET 7 B10 LYS B 139 LYS B 147 -1 O PHE B 141 N GLN B 132 SHEET 8 B10 GLN B 17 ILE B 24 -1 N LEU B 19 O PHE B 144 SHEET 9 B10 LYS B 54 THR B 57 -1 O TYR B 56 N TYR B 22 SHEET 10 B10 ARG B 63 VAL B 77 -1 O VAL B 64 N LEU B 55 SHEET 1 C10 LEU C 48 PHE C 51 0 SHEET 2 C10 ARG C 63 VAL C 77 -1 O CYS C 71 N VAL C 49 SHEET 3 C10 GLY C 82 TYR C 92 -1 O TYR C 92 N ILE C 66 SHEET 4 C10 GLY C 97 LEU C 106 -1 O TYR C 105 N PHE C 85 SHEET 5 C10 SER C 111 GLY C 120 -1 O GLY C 117 N SER C 100 SHEET 6 C10 TYR C 126 VAL C 135 -1 O LEU C 131 N SER C 111 SHEET 7 C10 LYS C 139 LYS C 147 -1 O PHE C 141 N GLN C 132 SHEET 8 C10 GLN C 17 ILE C 24 -1 N LEU C 19 O PHE C 144 SHEET 9 C10 LYS C 54 THR C 57 -1 O TYR C 56 N TYR C 22 SHEET 10 C10 ARG C 63 VAL C 77 -1 O GLY C 65 N LEU C 55 LINK C LEU A 41 N MSE A 42 1555 1555 1.34 LINK C MSE A 42 N PHE A 43 1555 1555 1.33 LINK C LEU B 41 N MSE B 42 1555 1555 1.33 LINK C MSE B 42 N PHE B 43 1555 1555 1.33 LINK C LEU C 41 N MSE C 42 1555 1555 1.35 LINK C MSE C 42 N PHE C 43 1555 1555 1.32 CISPEP 1 SER A 31 PRO A 32 0 3.23 CISPEP 2 TYR A 136 PRO A 137 0 -1.73 CISPEP 3 SER B 31 PRO B 32 0 -1.79 CISPEP 4 TYR B 136 PRO B 137 0 -9.49 CISPEP 5 SER C 31 PRO C 32 0 -3.35 CISPEP 6 TYR C 136 PRO C 137 0 -9.28 SITE 1 AC1 11 GLU B 23 PRO B 32 VAL B 49 PHE B 51 SITE 2 AC1 11 ASN B 53 PHE B 85 TYR B 89 TYR B 105 SITE 3 AC1 11 TYR B 136 TYR B 142 HOH B 530 SITE 1 AC2 7 ASN A 37 ASN B 37 LEU C 35 ASN C 37 SITE 2 AC2 7 HOH C 565 HOH C 569 HOH C 573 SITE 1 AC3 5 ASP B 28 ARG B 29 LYS B 54 ASN B 188 SITE 2 AC3 5 HOH B 602 SITE 1 AC4 4 ASP A 28 ARG A 29 LYS A 54 ASN A 188 SITE 1 AC5 9 GLU A 75 HIS A 76 PRO A 78 GLU A 79 SITE 2 AC5 9 HOH A 609 HOH A 619 ARG C 29 ASN C 188 SITE 3 AC5 9 GOL C 505 SITE 1 AC6 6 GOL A 504 ASP C 28 ARG C 29 LYS C 54 SITE 2 AC6 6 ASN C 188 HOH C 608 CRYST1 64.500 99.800 105.900 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015500 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009440 0.00000