HEADER RNA BINDING PROTEIN 30-MAR-06 2DIT TITLE SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF HIV TAT SPECIFIC FACTOR 1 TITLE 2 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV TAT SPECIFIC FACTOR 1 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM_1 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIV TAT SPECIFIC FACTOR 1 VARIANT; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050711-19; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, RRM_1 DOMAIN, HIV TAT SPECIFIC FACTOR 1 VARIANT, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DIT 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DIT 1 VERSN REVDAT 1 30-SEP-06 2DIT 0 JRNL AUTH W.DANG,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RRM_1 DOMAIN OF HIV TAT SPECIFIC JRNL TITL 2 FACTOR 1 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DIT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025462. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 26 5.38 -69.79 REMARK 500 1 LYS A 55 149.15 -170.02 REMARK 500 1 ASP A 60 43.02 -79.49 REMARK 500 1 ARG A 61 -33.28 -130.67 REMARK 500 1 PRO A 63 3.13 -69.80 REMARK 500 1 TYR A 105 -71.91 -58.16 REMARK 500 1 SER A 107 161.11 -48.90 REMARK 500 1 SER A 110 58.84 -95.24 REMARK 500 2 SER A 2 112.38 -165.16 REMARK 500 2 ARG A 13 78.68 -119.68 REMARK 500 2 PRO A 26 3.33 -69.78 REMARK 500 2 ASP A 60 35.75 -81.54 REMARK 500 2 PRO A 63 1.54 -69.76 REMARK 500 2 ASP A 100 -74.75 -123.00 REMARK 500 2 THR A 102 -37.49 -134.54 REMARK 500 2 TYR A 105 -70.05 -51.16 REMARK 500 2 SER A 107 159.81 -45.57 REMARK 500 3 SER A 2 -54.95 -125.09 REMARK 500 3 HIS A 14 44.76 -90.95 REMARK 500 3 GLU A 15 44.60 -87.30 REMARK 500 3 ARG A 16 58.11 -118.80 REMARK 500 3 PRO A 26 2.99 -69.78 REMARK 500 3 ASP A 60 36.31 -81.96 REMARK 500 3 PRO A 63 6.17 -69.76 REMARK 500 3 THR A 102 -34.35 -130.60 REMARK 500 4 GLU A 15 105.08 -36.34 REMARK 500 4 PRO A 63 4.08 -69.75 REMARK 500 4 SER A 107 146.52 -36.25 REMARK 500 5 SER A 6 172.60 -47.30 REMARK 500 5 SER A 10 173.38 -48.59 REMARK 500 5 ASP A 100 -65.35 -106.80 REMARK 500 6 ARG A 11 152.46 -49.35 REMARK 500 6 ARG A 13 71.02 -106.25 REMARK 500 6 ASP A 32 140.64 -172.23 REMARK 500 6 ASP A 100 -72.47 -110.13 REMARK 500 6 THR A 102 -31.51 -132.17 REMARK 500 7 ARG A 13 41.10 -85.46 REMARK 500 7 ARG A 16 68.88 -114.54 REMARK 500 7 ASP A 32 137.80 -174.18 REMARK 500 7 THR A 102 -40.89 -131.60 REMARK 500 7 SER A 107 151.12 -46.68 REMARK 500 8 PRO A 9 98.57 -69.80 REMARK 500 8 PRO A 26 1.59 -69.75 REMARK 500 8 ASP A 32 140.68 -170.70 REMARK 500 8 ASP A 60 39.25 -80.60 REMARK 500 8 PRO A 63 4.17 -69.75 REMARK 500 8 THR A 102 -33.59 -133.82 REMARK 500 8 SER A 111 103.99 -54.08 REMARK 500 9 SER A 3 168.51 -44.70 REMARK 500 9 PRO A 26 3.72 -69.79 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001189.1 RELATED DB: TARGETDB DBREF 2DIT A 8 106 GB 62088186 BAD92540 259 357 SEQADV 2DIT GLY A 1 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 2 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 3 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 4 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 5 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 6 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 7 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 107 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 108 GB 62088186 CLONING ARTIFACT SEQADV 2DIT PRO A 109 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 110 GB 62088186 CLONING ARTIFACT SEQADV 2DIT SER A 111 GB 62088186 CLONING ARTIFACT SEQADV 2DIT GLY A 112 GB 62088186 CLONING ARTIFACT SEQRES 1 A 112 GLY SER SER GLY SER SER GLY GLY PRO SER ARG MET ARG SEQRES 2 A 112 HIS GLU ARG VAL VAL ILE ILE LYS ASN MET PHE HIS PRO SEQRES 3 A 112 MET ASP PHE GLU ASP ASP PRO LEU VAL LEU ASN GLU ILE SEQRES 4 A 112 ARG GLU ASP LEU ARG VAL GLU CYS SER LYS PHE GLY GLN SEQRES 5 A 112 ILE ARG LYS LEU LEU LEU PHE ASP ARG HIS PRO ASP GLY SEQRES 6 A 112 VAL ALA SER VAL SER PHE ARG ASP PRO GLU GLU ALA ASP SEQRES 7 A 112 TYR CYS ILE GLN THR LEU ASP GLY ARG TRP PHE GLY GLY SEQRES 8 A 112 ARG GLN ILE THR ALA GLN ALA TRP ASP GLY THR THR ASP SEQRES 9 A 112 TYR GLN SER GLY PRO SER SER GLY HELIX 1 1 ASP A 28 ASP A 31 1 4 HELIX 2 2 LEU A 34 LYS A 49 1 16 HELIX 3 3 SER A 70 THR A 83 1 14 SHEET 1 A 4 LYS A 55 LEU A 58 0 SHEET 2 A 4 VAL A 66 SER A 70 -1 SHEET 3 A 4 VAL A 17 LYS A 21 -1 SHEET 4 A 4 THR A 95 ALA A 98 -1 SHEET 1 B 2 TRP A 88 PHE A 89 0 SHEET 2 B 2 ARG A 92 GLN A 93 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1