data_2DIV # _entry.id 2DIV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DIV pdb_00002div 10.2210/pdb2div/pdb RCSB RCSB025464 ? ? WWPDB D_1000025464 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001001121.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DIV _pdbx_database_status.recvd_initial_deposition_date 2006-03-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dang, W.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Shirouzu, M.' 5 'Terada, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the RRM domain of TRNA selenocysteine associated protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dang, W.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Terada, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'TRNA selenocysteine associated protein' _entity.formula_weight 10569.101 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RRM domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA TPAKRFKLNYATYSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA TPAKRFKLNYATYSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001001121.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 ALA n 1 10 ALA n 1 11 SER n 1 12 LEU n 1 13 TRP n 1 14 MET n 1 15 GLY n 1 16 ASP n 1 17 LEU n 1 18 GLU n 1 19 PRO n 1 20 TYR n 1 21 MET n 1 22 ASP n 1 23 GLU n 1 24 ASN n 1 25 PHE n 1 26 ILE n 1 27 SER n 1 28 ARG n 1 29 ALA n 1 30 PHE n 1 31 ALA n 1 32 THR n 1 33 MET n 1 34 GLY n 1 35 GLU n 1 36 THR n 1 37 VAL n 1 38 MET n 1 39 SER n 1 40 VAL n 1 41 LYS n 1 42 ILE n 1 43 ILE n 1 44 ARG n 1 45 ASN n 1 46 ARG n 1 47 LEU n 1 48 THR n 1 49 GLY n 1 50 ILE n 1 51 PRO n 1 52 ALA n 1 53 GLY n 1 54 TYR n 1 55 CYS n 1 56 PHE n 1 57 VAL n 1 58 GLU n 1 59 PHE n 1 60 ALA n 1 61 ASP n 1 62 LEU n 1 63 ALA n 1 64 THR n 1 65 ALA n 1 66 GLU n 1 67 LYS n 1 68 CYS n 1 69 LEU n 1 70 HIS n 1 71 LYS n 1 72 ILE n 1 73 ASN n 1 74 GLY n 1 75 LYS n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ALA n 1 81 THR n 1 82 PRO n 1 83 ALA n 1 84 LYS n 1 85 ARG n 1 86 PHE n 1 87 LYS n 1 88 LEU n 1 89 ASN n 1 90 TYR n 1 91 ALA n 1 92 THR n 1 93 TYR n 1 94 SER n 1 95 GLY n 1 96 PRO n 1 97 SER n 1 98 SER n 1 99 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'SECP43; RP4-669K10.4; RP4-669K10.4-001' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051003-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAH00680 _struct_ref.pdbx_db_accession 12653787 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK LNYATY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DIV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 12653787 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 86 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 93 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DIV GLY A 1 ? GB 12653787 ? ? 'cloning artifact' 1 1 1 2DIV SER A 2 ? GB 12653787 ? ? 'cloning artifact' 2 2 1 2DIV SER A 3 ? GB 12653787 ? ? 'cloning artifact' 3 3 1 2DIV GLY A 4 ? GB 12653787 ? ? 'cloning artifact' 4 4 1 2DIV SER A 5 ? GB 12653787 ? ? 'cloning artifact' 5 5 1 2DIV SER A 6 ? GB 12653787 ? ? 'cloning artifact' 6 6 1 2DIV GLY A 7 ? GB 12653787 ? ? 'cloning artifact' 7 7 1 2DIV SER A 94 ? GB 12653787 ? ? 'cloning artifact' 94 8 1 2DIV GLY A 95 ? GB 12653787 ? ? 'cloning artifact' 95 9 1 2DIV PRO A 96 ? GB 12653787 ? ? 'cloning artifact' 96 10 1 2DIV SER A 97 ? GB 12653787 ? ? 'cloning artifact' 97 11 1 2DIV SER A 98 ? GB 12653787 ? ? 'cloning artifact' 98 12 1 2DIV GLY A 99 ? GB 12653787 ? ? 'cloning artifact' 99 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90%H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DIV _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DIV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DIV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 Delaglio,F. 2 'data analysis' NMRView 5.0.4 Johnson,B.A. 3 'data analysis' KUJIRA 0.9321 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 2DIV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DIV _struct.title 'Solution structure of the RRM domain of TRNA selenocysteine associated protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DIV _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;structural genomics, RRM domain, TRNA selenocysteine associated protein, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLU A 23 ? MET A 33 ? GLU A 23 MET A 33 1 ? 11 HELX_P HELX_P2 2 LEU A 62 ? ILE A 72 ? LEU A 62 ILE A 72 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 1 -0.04 2 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 2 -0.07 3 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 3 -0.08 4 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 4 -0.01 5 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 5 0.01 6 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 6 -0.09 7 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 7 -0.03 8 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 8 -0.03 9 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 9 -0.03 10 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 10 -0.12 11 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 11 0.00 12 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 12 -0.11 13 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 13 -0.01 14 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 14 0.02 15 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 15 -0.04 16 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 16 -0.02 17 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 17 -0.06 18 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 18 -0.03 19 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 19 -0.07 20 THR 81 A . ? THR 81 A PRO 82 A ? PRO 82 A 20 -0.07 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 39 ? ILE A 42 ? SER A 39 ILE A 42 A 2 CYS A 55 ? GLU A 58 ? CYS A 55 GLU A 58 A 3 SER A 11 ? MET A 14 ? SER A 11 MET A 14 # _database_PDB_matrix.entry_id 2DIV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DIV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 MET 21 21 21 MET MET A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 SER 27 27 27 SER SER A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 TYR 54 54 54 TYR TYR A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 PHE 56 56 56 PHE PHE A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 THR 64 64 64 THR THR A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 PRO 82 82 82 PRO PRO A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 PHE 86 86 86 PHE PHE A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-30 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_sheet # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' 6 4 'Structure model' '_struct_sheet.number_strands' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX Determination method: Author determined ; 700 ;SHEET Determination method: Author determined ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 8 ? ? -101.10 49.67 2 1 PRO A 19 ? ? -69.75 2.61 3 1 GLU A 23 ? ? -37.78 -32.55 4 1 ALA A 52 ? ? -39.41 -29.41 5 1 ASN A 73 ? ? -68.60 83.01 6 1 ALA A 80 ? ? -33.80 124.43 7 1 ALA A 83 ? ? -170.89 138.79 8 1 PHE A 86 ? ? -58.84 101.00 9 1 THR A 92 ? ? -104.47 42.12 10 1 TYR A 93 ? ? -84.24 42.16 11 2 SER A 6 ? ? -93.72 41.34 12 2 MET A 8 ? ? -54.64 86.47 13 2 PRO A 19 ? ? -69.75 2.18 14 2 ASN A 73 ? ? -67.84 81.29 15 2 ALA A 80 ? ? -37.03 129.93 16 2 ALA A 83 ? ? -174.67 113.03 17 2 PHE A 86 ? ? -56.75 100.22 18 2 THR A 92 ? ? -97.14 42.85 19 2 TYR A 93 ? ? -83.50 41.24 20 2 SER A 97 ? ? -45.26 96.28 21 3 MET A 8 ? ? -96.10 46.28 22 3 PRO A 19 ? ? -69.76 1.95 23 3 GLU A 23 ? ? -34.48 -34.02 24 3 ALA A 52 ? ? -37.36 -29.43 25 3 ASN A 73 ? ? -69.94 82.64 26 3 ALA A 80 ? ? -34.58 126.31 27 3 ALA A 83 ? ? -171.71 134.93 28 3 THR A 92 ? ? -112.85 60.76 29 4 SER A 2 ? ? -133.41 -39.12 30 4 PRO A 19 ? ? -69.84 2.49 31 4 ALA A 52 ? ? -37.35 -29.98 32 4 ASN A 73 ? ? -65.48 88.79 33 4 ALA A 80 ? ? -33.60 123.41 34 4 THR A 92 ? ? -96.79 34.91 35 4 SER A 94 ? ? -173.06 130.69 36 4 SER A 97 ? ? -37.54 139.02 37 5 SER A 3 ? ? -49.06 103.79 38 5 MET A 8 ? ? 39.55 45.50 39 5 ALA A 10 ? ? -85.24 30.02 40 5 GLU A 23 ? ? -37.06 -39.90 41 5 ALA A 52 ? ? -39.03 -28.94 42 5 ASN A 73 ? ? -63.12 83.76 43 5 TYR A 93 ? ? -42.61 106.19 44 6 SER A 6 ? ? -67.87 94.31 45 6 MET A 8 ? ? -111.23 68.41 46 6 ALA A 9 ? ? -98.74 -65.15 47 6 ALA A 10 ? ? -84.27 34.36 48 6 GLU A 23 ? ? -39.76 -37.56 49 6 ASN A 73 ? ? -65.32 81.22 50 6 ALA A 80 ? ? -33.73 136.22 51 7 MET A 8 ? ? -62.98 92.76 52 7 ALA A 9 ? ? -93.82 -64.78 53 7 ALA A 10 ? ? -91.82 31.09 54 7 ASN A 73 ? ? -57.22 91.17 55 7 THR A 92 ? ? -89.96 31.82 56 7 SER A 94 ? ? -160.09 115.48 57 8 SER A 6 ? ? -95.07 -60.19 58 8 GLU A 23 ? ? -35.35 -38.97 59 8 ALA A 52 ? ? -35.13 -31.65 60 8 ASN A 73 ? ? -62.90 83.93 61 8 ALA A 91 ? ? -47.12 -19.68 62 8 THR A 92 ? ? -106.01 44.96 63 8 SER A 97 ? ? -39.15 102.35 64 9 ALA A 52 ? ? -36.28 -30.82 65 9 ASN A 73 ? ? -64.10 81.35 66 9 ALA A 80 ? ? -35.05 140.90 67 9 ALA A 83 ? ? -172.78 124.31 68 9 THR A 92 ? ? -102.42 42.39 69 9 TYR A 93 ? ? -83.86 39.84 70 9 SER A 97 ? ? 37.08 46.96 71 10 SER A 3 ? ? -36.47 115.02 72 10 SER A 5 ? ? -64.25 97.58 73 10 GLU A 23 ? ? -34.31 -35.41 74 10 ALA A 52 ? ? -38.24 -29.06 75 10 ALA A 80 ? ? -35.93 152.40 76 10 THR A 92 ? ? -99.68 40.59 77 11 PRO A 19 ? ? -69.75 1.84 78 11 ALA A 52 ? ? -37.44 -28.09 79 11 ASN A 73 ? ? -61.36 86.35 80 11 ALA A 83 ? ? -167.59 119.72 81 11 SER A 97 ? ? -59.24 90.43 82 12 SER A 3 ? ? -66.69 99.16 83 12 MET A 8 ? ? 39.21 32.34 84 12 GLU A 23 ? ? -34.41 -38.46 85 12 ALA A 52 ? ? -39.64 -28.38 86 12 ASN A 73 ? ? -46.21 90.26 87 12 ALA A 80 ? ? -34.32 149.12 88 12 THR A 92 ? ? -94.02 31.32 89 12 PRO A 96 ? ? -69.72 89.11 90 13 SER A 5 ? ? -120.90 -52.04 91 13 MET A 8 ? ? -94.62 50.61 92 13 ALA A 10 ? ? -88.82 33.11 93 13 GLU A 23 ? ? -34.37 -37.97 94 13 ALA A 52 ? ? -36.79 -29.30 95 13 ASN A 73 ? ? -63.71 91.92 96 13 ALA A 80 ? ? -37.36 134.02 97 13 THR A 92 ? ? -101.32 42.24 98 13 TYR A 93 ? ? -84.98 30.89 99 14 MET A 8 ? ? -86.52 42.02 100 14 ASN A 73 ? ? -65.73 84.78 101 14 ALA A 80 ? ? -38.84 130.73 102 14 ALA A 83 ? ? -172.45 120.79 103 14 THR A 92 ? ? -36.79 -31.48 104 14 SER A 94 ? ? -47.25 158.64 105 14 SER A 97 ? ? -88.13 43.46 106 15 MET A 8 ? ? -85.91 42.32 107 15 GLU A 23 ? ? -38.85 -37.45 108 15 ALA A 52 ? ? -38.87 -30.18 109 15 ASN A 73 ? ? -31.45 97.67 110 15 ALA A 80 ? ? -34.35 127.80 111 15 THR A 92 ? ? -102.34 43.70 112 15 TYR A 93 ? ? -83.90 39.46 113 15 SER A 98 ? ? -35.10 109.74 114 16 ALA A 9 ? ? -98.28 -60.62 115 16 PRO A 19 ? ? -69.74 3.16 116 16 GLU A 23 ? ? -39.57 -28.36 117 16 ALA A 52 ? ? -36.46 -29.60 118 16 ALA A 63 ? ? -50.95 -70.36 119 16 ASN A 73 ? ? -59.36 80.44 120 16 ALA A 80 ? ? -45.19 153.62 121 16 THR A 92 ? ? -91.87 35.63 122 17 SER A 3 ? ? -91.10 52.45 123 17 ALA A 52 ? ? -39.68 -28.05 124 17 ASN A 73 ? ? -69.73 79.09 125 17 ALA A 80 ? ? -37.64 122.61 126 17 ALA A 83 ? ? -173.62 120.96 127 17 TYR A 93 ? ? -40.18 103.66 128 17 SER A 94 ? ? -166.91 115.30 129 18 SER A 2 ? ? -125.34 -60.56 130 18 PRO A 19 ? ? -69.76 3.25 131 18 ASN A 73 ? ? -61.33 81.01 132 18 ALA A 80 ? ? -35.47 135.42 133 18 ALA A 83 ? ? -167.38 115.63 134 18 THR A 92 ? ? -90.43 33.05 135 18 TYR A 93 ? ? 33.88 35.68 136 18 PRO A 96 ? ? -69.80 0.43 137 19 SER A 2 ? ? -160.65 114.93 138 19 GLU A 23 ? ? -34.14 -38.35 139 19 ALA A 52 ? ? -37.35 -29.96 140 19 ASN A 73 ? ? -67.37 82.40 141 19 ALA A 80 ? ? -49.70 109.29 142 19 TYR A 93 ? ? 29.90 51.32 143 20 MET A 8 ? ? 39.04 37.65 144 20 ASN A 73 ? ? -59.84 92.14 145 20 ALA A 80 ? ? -37.74 127.41 146 20 ALA A 91 ? ? -39.27 -30.30 147 20 THR A 92 ? ? -114.57 56.32 148 20 TYR A 93 ? ? -53.92 174.26 #