HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-MAR-06 2DJ0 TITLE THE SOLUTION STRUCTURE OF THE THIOREDOXIN DOMAIN OF HUMAN THIOREDOXIN- TITLE 2 RELATED TRANSMEMBRANE PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-RELATED TRANSMEMBRANE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIOREDOXIN DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TXNDC14; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050314-13; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS AVLA237, CGI-31 PROTEIN, TXNDC14, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN KEYWDS 4 FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DJ0 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DJ0 1 VERSN REVDAT 1 30-SEP-06 2DJ0 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE THIOREDOXIN DOMAIN OF HUMAN JRNL TITL 2 THIOREDOXIN-RELATED TRANSMEMBRANE PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DJ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025469. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM THIOREDOXIN DOMAIN U REMARK 210 -15N,13C; 20MM D-TRIS HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 25 -72.29 -44.31 REMARK 500 1 ARG A 26 -32.51 -39.52 REMARK 500 1 ASP A 66 103.36 -57.46 REMARK 500 1 LYS A 78 49.74 38.81 REMARK 500 1 THR A 85 172.43 -54.78 REMARK 500 1 GLU A 99 89.88 -64.17 REMARK 500 1 SER A 114 93.80 -63.33 REMARK 500 1 LEU A 131 -73.13 -50.86 REMARK 500 1 SER A 132 44.43 -83.07 REMARK 500 1 SER A 136 125.27 -36.00 REMARK 500 2 ILE A 17 -25.92 -39.62 REMARK 500 2 THR A 58 -75.09 -133.81 REMARK 500 2 LEU A 60 114.11 -37.91 REMARK 500 2 LYS A 78 45.93 38.55 REMARK 500 2 LEU A 84 53.26 -104.40 REMARK 500 2 PRO A 89 -176.37 -69.72 REMARK 500 2 LYS A 108 -72.34 -44.83 REMARK 500 2 SER A 114 85.32 -67.93 REMARK 500 3 SER A 3 110.00 -37.94 REMARK 500 3 LYS A 15 -60.70 -101.57 REMARK 500 3 LYS A 25 -73.88 -37.70 REMARK 500 3 THR A 81 44.18 -109.37 REMARK 500 3 PRO A 89 -179.85 -69.77 REMARK 500 3 GLN A 95 76.76 -118.38 REMARK 500 3 LYS A 108 33.67 36.57 REMARK 500 3 LYS A 109 -34.25 -130.60 REMARK 500 3 SER A 114 109.37 -54.25 REMARK 500 3 ASN A 127 41.91 34.31 REMARK 500 4 SER A 5 41.87 -105.84 REMARK 500 4 TYR A 70 55.47 -95.90 REMARK 500 4 THR A 71 -29.29 -37.58 REMARK 500 4 LYS A 78 45.41 34.77 REMARK 500 4 SER A 80 141.15 -34.81 REMARK 500 4 THR A 85 172.77 -52.97 REMARK 500 4 GLN A 95 72.15 -119.10 REMARK 500 4 LYS A 109 34.75 -86.90 REMARK 500 4 SER A 114 106.40 -58.22 REMARK 500 4 ASN A 127 38.87 34.64 REMARK 500 5 SER A 2 42.52 36.48 REMARK 500 5 LYS A 25 -70.09 -44.20 REMARK 500 5 VAL A 65 106.26 -162.84 REMARK 500 5 PRO A 83 3.88 -69.79 REMARK 500 5 PRO A 89 -177.04 -69.75 REMARK 500 5 GLU A 99 89.09 -68.67 REMARK 500 5 SER A 114 99.95 -58.44 REMARK 500 6 SER A 3 155.07 -37.78 REMARK 500 6 LYS A 15 -66.16 -103.06 REMARK 500 6 ILE A 17 -35.89 -37.62 REMARK 500 6 GLU A 19 -37.54 -38.92 REMARK 500 6 THR A 58 -31.03 -39.99 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002004346.1 RELATED DB: TARGETDB DBREF 2DJ0 A 8 131 GB 12653761 AAH00666 137 260 SEQADV 2DJ0 GLY A 1 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 2 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 3 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 GLY A 4 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 5 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 6 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 GLY A 7 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 132 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 GLY A 133 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 PRO A 134 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 135 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 SER A 136 GB 12653761 CLONING ARTIFACT SEQADV 2DJ0 GLY A 137 GB 12653761 CLONING ARTIFACT SEQRES 1 A 137 GLY SER SER GLY SER SER GLY TYR ILE LYS TYR PHE ASN SEQRES 2 A 137 ASP LYS THR ILE ASP GLU GLU LEU GLU ARG ASP LYS ARG SEQRES 3 A 137 VAL THR TRP ILE VAL GLU PHE PHE ALA ASN TRP SER ASN SEQRES 4 A 137 ASP CYS GLN SER PHE ALA PRO ILE TYR ALA ASP LEU SER SEQRES 5 A 137 LEU LYS TYR ASN CYS THR GLY LEU ASN PHE GLY LYS VAL SEQRES 6 A 137 ASP VAL GLY ARG TYR THR ASP VAL SER THR ARG TYR LYS SEQRES 7 A 137 VAL SER THR SER PRO LEU THR LYS GLN LEU PRO THR LEU SEQRES 8 A 137 ILE LEU PHE GLN GLY GLY LYS GLU ALA MET ARG ARG PRO SEQRES 9 A 137 GLN ILE ASP LYS LYS GLY ARG ALA VAL SER TRP THR PHE SEQRES 10 A 137 SER GLU GLU ASN VAL ILE ARG GLU PHE ASN LEU ASN GLU SEQRES 11 A 137 LEU SER GLY PRO SER SER GLY HELIX 1 1 LYS A 15 ASP A 24 1 10 HELIX 2 2 PHE A 44 ASN A 56 1 13 HELIX 3 3 TYR A 70 TYR A 77 1 8 HELIX 4 4 SER A 118 ASN A 127 1 10 HELIX 5 5 ASN A 127 SER A 132 1 6 SHEET 1 A 5 LYS A 10 TYR A 11 0 SHEET 2 A 5 ASN A 61 LYS A 64 1 O PHE A 62 N LYS A 10 SHEET 3 A 5 TRP A 29 PHE A 33 1 N ILE A 30 O GLY A 63 SHEET 4 A 5 THR A 90 PHE A 94 -1 O THR A 90 N PHE A 33 SHEET 5 A 5 GLU A 99 ARG A 103 -1 O MET A 101 N LEU A 93 CISPEP 1 LEU A 88 PRO A 89 1 -0.12 CISPEP 2 ARG A 103 PRO A 104 1 -0.05 CISPEP 3 LEU A 88 PRO A 89 2 -0.14 CISPEP 4 ARG A 103 PRO A 104 2 0.05 CISPEP 5 LEU A 88 PRO A 89 3 -0.09 CISPEP 6 ARG A 103 PRO A 104 3 0.01 CISPEP 7 LEU A 88 PRO A 89 4 -0.07 CISPEP 8 ARG A 103 PRO A 104 4 -0.02 CISPEP 9 LEU A 88 PRO A 89 5 -0.14 CISPEP 10 ARG A 103 PRO A 104 5 0.01 CISPEP 11 LEU A 88 PRO A 89 6 -0.16 CISPEP 12 ARG A 103 PRO A 104 6 0.09 CISPEP 13 LEU A 88 PRO A 89 7 -0.15 CISPEP 14 ARG A 103 PRO A 104 7 -0.01 CISPEP 15 LEU A 88 PRO A 89 8 -0.14 CISPEP 16 ARG A 103 PRO A 104 8 0.02 CISPEP 17 LEU A 88 PRO A 89 9 -0.16 CISPEP 18 ARG A 103 PRO A 104 9 -0.01 CISPEP 19 LEU A 88 PRO A 89 10 -0.08 CISPEP 20 ARG A 103 PRO A 104 10 0.09 CISPEP 21 LEU A 88 PRO A 89 11 -0.12 CISPEP 22 ARG A 103 PRO A 104 11 0.02 CISPEP 23 LEU A 88 PRO A 89 12 -0.18 CISPEP 24 ARG A 103 PRO A 104 12 -0.02 CISPEP 25 LEU A 88 PRO A 89 13 -0.15 CISPEP 26 ARG A 103 PRO A 104 13 -0.03 CISPEP 27 LEU A 88 PRO A 89 14 -0.12 CISPEP 28 ARG A 103 PRO A 104 14 0.03 CISPEP 29 LEU A 88 PRO A 89 15 -0.13 CISPEP 30 ARG A 103 PRO A 104 15 0.00 CISPEP 31 LEU A 88 PRO A 89 16 -0.12 CISPEP 32 ARG A 103 PRO A 104 16 0.02 CISPEP 33 LEU A 88 PRO A 89 17 -0.04 CISPEP 34 ARG A 103 PRO A 104 17 -0.09 CISPEP 35 LEU A 88 PRO A 89 18 -0.11 CISPEP 36 ARG A 103 PRO A 104 18 -0.03 CISPEP 37 LEU A 88 PRO A 89 19 -0.12 CISPEP 38 ARG A 103 PRO A 104 19 0.05 CISPEP 39 LEU A 88 PRO A 89 20 -0.14 CISPEP 40 ARG A 103 PRO A 104 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1