HEADER ISOMERASE 30-MAR-06 2DJ2 TITLE THE SOLUTION STRUCTURE OF THE SECOND THIOREDOXIN DOMAIN OF MOUSE TITLE 2 PROTEIN DISULFIDE-ISOMERASE A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 2ND THIOREDOXIN DOMAIN; COMPND 5 SYNONYM: PROTEIN ERP-72, ERP72; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDIA4, CAI, ERP72; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-14; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTEIN ERP-72, ERP72, CAI, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DJ2 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DJ2 1 VERSN REVDAT 1 30-SEP-06 2DJ2 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE SECOND THIOREDOXIN DOMAIN OF JRNL TITL 2 MOUSE PROTEIN DISULFIDE-ISOMERASE A4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DJ2 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025471. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM THIOREDOXIN DOMAIN U REMARK 210 -15N,13C; 20MM D-TRIS HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 34 3.16 -69.75 REMARK 500 1 ARG A 56 -179.79 -67.68 REMARK 500 1 GLN A 70 35.21 -100.00 REMARK 500 1 MET A 109 -35.89 -37.55 REMARK 500 2 PRO A 34 2.91 -69.74 REMARK 500 2 HIS A 38 -38.01 -34.67 REMARK 500 2 MET A 109 -37.63 -35.98 REMARK 500 2 SER A 115 135.30 -175.02 REMARK 500 3 PRO A 34 3.06 -69.80 REMARK 500 3 ARG A 56 -179.24 -68.41 REMARK 500 3 ASP A 78 46.64 36.25 REMARK 500 3 LYS A 90 28.29 43.34 REMARK 500 3 MET A 109 -36.18 -38.47 REMARK 500 3 SER A 115 128.19 -35.09 REMARK 500 4 PRO A 34 3.46 -69.77 REMARK 500 4 LYS A 40 -30.73 -39.42 REMARK 500 4 ARG A 56 -177.38 -62.01 REMARK 500 4 ASP A 95 106.81 -46.44 REMARK 500 4 ARG A 100 32.38 -96.25 REMARK 500 4 SER A 115 41.99 -107.88 REMARK 500 4 PRO A 117 -175.87 -69.78 REMARK 500 5 SER A 2 123.87 -36.43 REMARK 500 5 SER A 3 141.93 -170.90 REMARK 500 5 SER A 5 50.73 -109.11 REMARK 500 5 PRO A 34 3.54 -69.79 REMARK 500 5 ARG A 56 -175.90 -54.12 REMARK 500 5 GLN A 70 40.65 -95.75 REMARK 500 6 PRO A 34 3.36 -69.70 REMARK 500 6 HIS A 38 -30.86 -37.74 REMARK 500 6 GLN A 70 37.17 -96.82 REMARK 500 6 ASP A 78 47.98 39.29 REMARK 500 6 ASP A 95 112.09 -34.92 REMARK 500 6 PRO A 117 6.60 -69.71 REMARK 500 6 SER A 118 93.54 -33.20 REMARK 500 7 LYS A 14 27.31 -75.94 REMARK 500 7 PRO A 34 2.93 -69.83 REMARK 500 7 HIS A 38 -35.16 -37.63 REMARK 500 7 SER A 118 89.85 -65.40 REMARK 500 8 VAL A 8 -33.54 -34.48 REMARK 500 8 LYS A 14 -7.10 -58.68 REMARK 500 8 PRO A 34 3.71 -69.77 REMARK 500 8 HIS A 38 -37.72 -34.15 REMARK 500 8 LYS A 40 -25.91 -38.91 REMARK 500 9 SER A 6 -48.09 -132.08 REMARK 500 9 PRO A 34 3.13 -69.77 REMARK 500 9 HIS A 38 -36.28 -36.05 REMARK 500 9 ARG A 56 -174.74 -67.50 REMARK 500 9 GLN A 70 40.68 -96.50 REMARK 500 10 SER A 5 46.25 -107.57 REMARK 500 10 LYS A 14 27.79 -76.98 REMARK 500 REMARK 500 THIS ENTRY HAS 133 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000334.1 RELATED DB: TARGETDB DBREF 2DJ2 A 8 114 UNP P08003 PDIA4_MOUSE 152 180 SEQADV 2DJ2 GLY A 1 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 2 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 3 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 GLY A 4 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 5 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 6 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 GLY A 7 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 115 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 GLY A 116 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 PRO A 117 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 118 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 SER A 119 UNP P08003 CLONING ARTIFACT SEQADV 2DJ2 GLY A 120 UNP P08003 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY VAL THR LEU SER LEU THR SEQRES 2 A 120 LYS ASP ASN PHE ASP ASP VAL VAL ASN ASN ALA ASP ILE SEQRES 3 A 120 ILE LEU VAL GLU PHE TYR ALA PRO TRP CYS GLY HIS CYS SEQRES 4 A 120 LYS LYS LEU ALA PRO GLU TYR GLU LYS ALA ALA LYS GLU SEQRES 5 A 120 LEU SER LYS ARG SER PRO PRO ILE PRO LEU ALA LYS VAL SEQRES 6 A 120 ASP ALA THR GLU GLN THR ASP LEU ALA LYS ARG PHE ASP SEQRES 7 A 120 VAL SER GLY TYR PRO THR LEU LYS ILE PHE ARG LYS GLY SEQRES 8 A 120 ARG PRO PHE ASP TYR ASN GLY PRO ARG GLU LYS TYR GLY SEQRES 9 A 120 ILE VAL ASP TYR MET ILE GLU GLN SER GLY SER GLY PRO SEQRES 10 A 120 SER SER GLY HELIX 1 1 VAL A 20 ALA A 24 5 5 HELIX 2 2 CYS A 36 ARG A 56 1 21 HELIX 3 3 GLN A 70 PHE A 77 1 8 HELIX 4 4 GLU A 101 SER A 115 1 15 SHEET 1 A 4 LEU A 62 ASP A 66 0 SHEET 2 A 4 ILE A 27 TYR A 32 1 N LEU A 28 O ALA A 63 SHEET 3 A 4 THR A 84 PHE A 88 -1 O THR A 84 N PHE A 31 SHEET 4 A 4 PRO A 93 ASP A 95 -1 O PHE A 94 N ILE A 87 CISPEP 1 SER A 57 PRO A 58 1 0.00 CISPEP 2 TYR A 82 PRO A 83 1 -0.05 CISPEP 3 SER A 57 PRO A 58 2 -0.03 CISPEP 4 TYR A 82 PRO A 83 2 -0.12 CISPEP 5 SER A 57 PRO A 58 3 -0.07 CISPEP 6 TYR A 82 PRO A 83 3 -0.14 CISPEP 7 SER A 57 PRO A 58 4 -0.04 CISPEP 8 TYR A 82 PRO A 83 4 -0.08 CISPEP 9 SER A 57 PRO A 58 5 0.01 CISPEP 10 TYR A 82 PRO A 83 5 -0.04 CISPEP 11 SER A 57 PRO A 58 6 -0.03 CISPEP 12 TYR A 82 PRO A 83 6 -0.06 CISPEP 13 SER A 57 PRO A 58 7 -0.01 CISPEP 14 TYR A 82 PRO A 83 7 -0.12 CISPEP 15 SER A 57 PRO A 58 8 0.02 CISPEP 16 TYR A 82 PRO A 83 8 -0.05 CISPEP 17 SER A 57 PRO A 58 9 -0.01 CISPEP 18 TYR A 82 PRO A 83 9 -0.06 CISPEP 19 SER A 57 PRO A 58 10 -0.01 CISPEP 20 TYR A 82 PRO A 83 10 -0.04 CISPEP 21 SER A 57 PRO A 58 11 -0.09 CISPEP 22 TYR A 82 PRO A 83 11 -0.03 CISPEP 23 SER A 57 PRO A 58 12 -0.01 CISPEP 24 TYR A 82 PRO A 83 12 -0.02 CISPEP 25 SER A 57 PRO A 58 13 -0.08 CISPEP 26 TYR A 82 PRO A 83 13 -0.05 CISPEP 27 SER A 57 PRO A 58 14 -0.07 CISPEP 28 TYR A 82 PRO A 83 14 -0.09 CISPEP 29 SER A 57 PRO A 58 15 0.00 CISPEP 30 TYR A 82 PRO A 83 15 -0.07 CISPEP 31 SER A 57 PRO A 58 16 0.02 CISPEP 32 TYR A 82 PRO A 83 16 -0.08 CISPEP 33 SER A 57 PRO A 58 17 -0.11 CISPEP 34 TYR A 82 PRO A 83 17 -0.08 CISPEP 35 SER A 57 PRO A 58 18 -0.08 CISPEP 36 TYR A 82 PRO A 83 18 -0.07 CISPEP 37 SER A 57 PRO A 58 19 0.08 CISPEP 38 TYR A 82 PRO A 83 19 0.00 CISPEP 39 SER A 57 PRO A 58 20 -0.05 CISPEP 40 TYR A 82 PRO A 83 20 -0.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1