HEADER ISOMERASE 30-MAR-06 2DJ3 TITLE THE SOLUTION STRUCTURE OF THE THIRD THIOREDOXIN DOMAIN OF MOUSE TITLE 2 PROTEIN DISULFIDE-ISOMERASE A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN DISULFIDE-ISOMERASE A4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: 3RD THIOREDOXIN DOMAIN; COMPND 5 SYNONYM: PROTEIN ERP-72, ERP72; COMPND 6 EC: 5.3.4.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PDIA4, CAI, ERP72; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050425-15; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTEIN ERP-72, ERP72, CAI, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DJ3 1 REMARK REVDAT 3 09-MAR-22 2DJ3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DJ3 1 VERSN REVDAT 1 30-SEP-06 2DJ3 0 JRNL AUTH N.TOCHIO,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE THIRD THIOREDOXIN DOMAIN OF JRNL TITL 2 MOUSE PROTEIN DISULFIDE-ISOMERASE A4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DJ3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025472. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.3MM THIOREDOXIN DOMAIN U REMARK 210 -15N,13C; 20MM D-TRIS HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 20 -69.74 -96.11 REMARK 500 1 PRO A 24 2.06 -69.76 REMARK 500 1 PRO A 35 0.47 -69.76 REMARK 500 1 ILE A 72 97.30 -67.68 REMARK 500 1 ASN A 74 179.54 -50.52 REMARK 500 1 SER A 90 103.69 -53.78 REMARK 500 1 LYS A 94 -27.38 -38.17 REMARK 500 1 ALA A 117 -175.22 -65.83 REMARK 500 1 THR A 118 41.56 -80.55 REMARK 500 1 ARG A 122 96.25 -69.31 REMARK 500 1 SER A 128 42.44 -98.67 REMARK 500 2 ILE A 20 -69.74 -96.06 REMARK 500 2 PRO A 24 3.04 -69.79 REMARK 500 2 ASN A 74 170.73 -50.24 REMARK 500 2 SER A 90 103.75 -51.41 REMARK 500 2 ARG A 122 162.85 -44.70 REMARK 500 2 LEU A 127 128.11 -173.80 REMARK 500 3 SER A 3 -57.15 -125.40 REMARK 500 3 ILE A 20 -69.92 -93.21 REMARK 500 3 PRO A 24 3.81 -69.70 REMARK 500 3 PRO A 35 2.88 -69.71 REMARK 500 3 ILE A 72 99.59 -61.39 REMARK 500 3 ASN A 74 -176.29 -51.95 REMARK 500 3 ASP A 75 -34.07 -132.67 REMARK 500 3 SER A 90 106.60 -43.20 REMARK 500 3 LYS A 94 -30.14 -37.79 REMARK 500 3 LYS A 124 43.91 -99.34 REMARK 500 3 SER A 131 100.86 -36.61 REMARK 500 4 SER A 6 112.94 -39.42 REMARK 500 4 ILE A 20 -68.98 -96.08 REMARK 500 4 PRO A 24 4.47 -69.73 REMARK 500 4 PRO A 35 0.97 -69.77 REMARK 500 4 SER A 90 104.03 -46.18 REMARK 500 4 THR A 118 48.08 -75.39 REMARK 500 4 PRO A 130 92.51 -69.75 REMARK 500 5 SER A 5 80.58 -65.51 REMARK 500 5 ILE A 20 -70.85 -93.76 REMARK 500 5 PRO A 24 8.71 -69.74 REMARK 500 5 PRO A 35 1.97 -69.74 REMARK 500 5 ASN A 74 -178.45 -50.19 REMARK 500 5 SER A 90 107.71 -54.71 REMARK 500 5 LYS A 94 -33.36 -33.90 REMARK 500 5 ALA A 117 -175.53 -68.65 REMARK 500 5 GLU A 126 45.88 35.81 REMARK 500 5 SER A 128 148.97 -174.05 REMARK 500 5 PRO A 130 89.89 -69.73 REMARK 500 6 ILE A 20 -69.51 -94.82 REMARK 500 6 PRO A 24 3.13 -69.78 REMARK 500 6 PRO A 35 1.38 -69.79 REMARK 500 6 ASN A 74 172.19 -56.77 REMARK 500 REMARK 500 THIS ENTRY HAS 201 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000334.3 RELATED DB: TARGETDB DBREF 2DJ3 A 8 127 UNP P08003 PDIA4_MOUSE 464 495 SEQADV 2DJ3 GLY A 1 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 2 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 3 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 4 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 5 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 6 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 7 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 128 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 129 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 PRO A 130 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 131 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 SER A 132 UNP P08003 CLONING ARTIFACT SEQADV 2DJ3 GLY A 133 UNP P08003 CLONING ARTIFACT SEQRES 1 A 133 GLY SER SER GLY SER SER GLY PRO VAL LYS VAL VAL VAL SEQRES 2 A 133 GLY LYS THR PHE ASP ALA ILE VAL MET ASP PRO LYS LYS SEQRES 3 A 133 ASP VAL LEU ILE GLU PHE TYR ALA PRO TRP CYS GLY HIS SEQRES 4 A 133 CYS LYS GLN LEU GLU PRO ILE TYR THR SER LEU GLY LYS SEQRES 5 A 133 LYS TYR LYS GLY GLN LYS ASP LEU VAL ILE ALA LYS MET SEQRES 6 A 133 ASP ALA THR ALA ASN ASP ILE THR ASN ASP GLN TYR LYS SEQRES 7 A 133 VAL GLU GLY PHE PRO THR ILE TYR PHE ALA PRO SER GLY SEQRES 8 A 133 ASP LYS LYS ASN PRO ILE LYS PHE GLU GLY GLY ASN ARG SEQRES 9 A 133 ASP LEU GLU HIS LEU SER LYS PHE ILE ASP GLU HIS ALA SEQRES 10 A 133 THR LYS ARG SER ARG THR LYS GLU GLU LEU SER GLY PRO SEQRES 11 A 133 SER SER GLY HELIX 1 1 GLY A 38 LYS A 55 1 18 HELIX 2 2 GLU A 107 ALA A 117 1 11 SHEET 1 A 5 LYS A 10 VAL A 11 0 SHEET 2 A 5 LEU A 60 MET A 65 1 O LYS A 64 N LYS A 10 SHEET 3 A 5 ASP A 27 PHE A 32 1 N GLU A 31 O MET A 65 SHEET 4 A 5 THR A 84 ALA A 88 -1 O THR A 84 N PHE A 32 SHEET 5 A 5 ILE A 97 LYS A 98 -1 O ILE A 97 N PHE A 87 CISPEP 1 PHE A 82 PRO A 83 1 -0.02 CISPEP 2 PHE A 82 PRO A 83 2 -0.03 CISPEP 3 PHE A 82 PRO A 83 3 -0.01 CISPEP 4 PHE A 82 PRO A 83 4 -0.03 CISPEP 5 PHE A 82 PRO A 83 5 -0.01 CISPEP 6 PHE A 82 PRO A 83 6 0.01 CISPEP 7 PHE A 82 PRO A 83 7 -0.03 CISPEP 8 PHE A 82 PRO A 83 8 -0.04 CISPEP 9 PHE A 82 PRO A 83 9 -0.03 CISPEP 10 PHE A 82 PRO A 83 10 0.03 CISPEP 11 PHE A 82 PRO A 83 11 -0.02 CISPEP 12 PHE A 82 PRO A 83 12 0.08 CISPEP 13 PHE A 82 PRO A 83 13 -0.02 CISPEP 14 PHE A 82 PRO A 83 14 0.00 CISPEP 15 PHE A 82 PRO A 83 15 0.01 CISPEP 16 PHE A 82 PRO A 83 16 0.07 CISPEP 17 PHE A 82 PRO A 83 17 0.02 CISPEP 18 PHE A 82 PRO A 83 18 -0.03 CISPEP 19 PHE A 82 PRO A 83 19 0.04 CISPEP 20 PHE A 82 PRO A 83 20 -0.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1