HEADER SIGNALING PROTEIN 05-APR-06 2DJS TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN EPHRIN TYPE-B RECEPTOR TITLE 2 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-B RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: TYROSINE-PROTEIN KINASE RECEPTOR EPH-2, NET, HEK6, ELK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHB1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050912-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS TYROSINE-PROTEIN KINASE RECEPTOR EPH-2, NET, HEK6, ELK, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DJS 1 REMARK REVDAT 3 09-MAR-22 2DJS 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DJS 1 VERSN REVDAT 1 05-OCT-06 2DJS 0 JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN EPHRIN TYPE-B JRNL TITL 2 RECEPTOR 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DJS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025497. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N, 13C; 20MM REMARK 210 D-TRIS HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -174.87 -56.91 REMARK 500 1 ALA A 19 145.66 -173.92 REMARK 500 1 GLN A 33 56.05 -118.43 REMARK 500 1 PRO A 34 0.38 -69.75 REMARK 500 1 ASP A 102 43.42 -98.08 REMARK 500 2 PRO A 34 2.41 -69.72 REMARK 500 2 SER A 103 -56.75 -125.84 REMARK 500 3 SER A 9 -179.31 -59.85 REMARK 500 3 GLN A 33 53.20 -118.55 REMARK 500 3 PRO A 34 1.97 -69.75 REMARK 500 3 LYS A 94 155.44 -40.67 REMARK 500 4 SER A 3 105.67 -56.91 REMARK 500 4 SER A 9 175.46 -48.80 REMARK 500 4 ALA A 19 142.69 -171.72 REMARK 500 4 PRO A 34 0.43 -69.75 REMARK 500 4 ASN A 35 25.04 42.07 REMARK 500 4 ILE A 37 141.85 -37.63 REMARK 500 4 ASN A 54 49.21 -78.56 REMARK 500 4 SER A 103 149.64 -173.98 REMARK 500 4 SER A 106 47.53 34.62 REMARK 500 5 PRO A 34 0.42 -69.76 REMARK 500 5 ASN A 35 29.36 45.73 REMARK 500 6 SER A 9 -179.46 -64.73 REMARK 500 6 GLN A 33 53.83 -119.95 REMARK 500 6 ILE A 37 107.75 -52.27 REMARK 500 6 ASN A 54 61.42 -104.56 REMARK 500 6 SER A 107 176.66 -59.76 REMARK 500 7 SER A 5 154.86 -41.62 REMARK 500 7 SER A 9 175.69 -50.94 REMARK 500 8 SER A 2 105.74 -36.64 REMARK 500 8 SER A 9 175.57 -51.94 REMARK 500 8 PRO A 34 2.57 -69.76 REMARK 500 8 ASN A 54 48.78 -94.76 REMARK 500 8 PRO A 105 -178.68 -69.73 REMARK 500 8 SER A 106 145.55 -173.36 REMARK 500 9 SER A 2 42.44 -88.71 REMARK 500 9 ALA A 19 145.75 -175.03 REMARK 500 9 PRO A 34 0.83 -69.75 REMARK 500 9 ASN A 35 25.31 42.79 REMARK 500 9 ILE A 37 134.46 -39.97 REMARK 500 9 ASP A 102 39.44 -86.90 REMARK 500 10 ALA A 19 146.59 -172.30 REMARK 500 10 PRO A 29 -179.45 -69.75 REMARK 500 10 GLN A 33 51.11 -119.55 REMARK 500 10 PRO A 34 2.35 -69.81 REMARK 500 10 SER A 107 176.17 -55.78 REMARK 500 11 SER A 9 171.08 -56.88 REMARK 500 12 GLN A 33 50.41 -119.55 REMARK 500 12 PRO A 34 2.40 -69.78 REMARK 500 12 ASN A 54 53.93 -104.36 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001071.1 RELATED DB: TARGETDB DBREF 2DJS A 8 102 UNP P54762 EPHB1_HUMAN 434 528 SEQADV 2DJS GLY A 1 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 2 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 3 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 4 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 5 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 6 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 7 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 103 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 104 UNP P54762 CLONING ARTIFACT SEQADV 2DJS PRO A 105 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 106 UNP P54762 CLONING ARTIFACT SEQADV 2DJS SER A 107 UNP P54762 CLONING ARTIFACT SEQADV 2DJS GLY A 108 UNP P54762 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY PRO SER THR VAL PRO ILE SEQRES 2 A 108 MET HIS GLN VAL SER ALA THR MET ARG SER ILE THR LEU SEQRES 3 A 108 SER TRP PRO GLN PRO GLU GLN PRO ASN GLY ILE ILE LEU SEQRES 4 A 108 ASP TYR GLU ILE ARG TYR TYR GLU LYS GLU HIS ASN GLU SEQRES 5 A 108 PHE ASN SER SER MET ALA ARG SER GLN THR ASN THR ALA SEQRES 6 A 108 ARG ILE ASP GLY LEU ARG PRO GLY MET VAL TYR VAL VAL SEQRES 7 A 108 GLN VAL ARG ALA ARG THR VAL ALA GLY TYR GLY LYS PHE SEQRES 8 A 108 SER GLY LYS MET CYS PHE GLN THR LEU THR ASP SER GLY SEQRES 9 A 108 PRO SER SER GLY SHEET 1 A 3 HIS A 15 ALA A 19 0 SHEET 2 A 3 SER A 23 SER A 27 -1 O SER A 27 N HIS A 15 SHEET 3 A 3 THR A 64 ASP A 68 -1 O ILE A 67 N ILE A 24 SHEET 1 B 4 SER A 56 SER A 60 0 SHEET 2 B 4 ILE A 38 GLU A 47 -1 N ILE A 43 O ALA A 58 SHEET 3 B 4 VAL A 75 THR A 84 -1 O ARG A 81 N GLU A 42 SHEET 4 B 4 TYR A 88 PHE A 91 -1 O GLY A 89 N ALA A 82 SHEET 1 C 4 SER A 56 SER A 60 0 SHEET 2 C 4 ILE A 38 GLU A 47 -1 N ILE A 43 O ALA A 58 SHEET 3 C 4 VAL A 75 THR A 84 -1 O ARG A 81 N GLU A 42 SHEET 4 C 4 MET A 95 GLN A 98 -1 O PHE A 97 N TYR A 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1