HEADER SIGNALING PROTEIN 12-APR-06 2DKM TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN COLLAGEN ALPHA-1(XX) TITLE 2 CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGEN ALPHA-1(XX) CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: COL20A1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050711-10; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS FN3 DOMAIN, KIAA1510, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DKM 1 REMARK REVDAT 3 09-MAR-22 2DKM 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DKM 1 VERSN REVDAT 1 12-OCT-06 2DKM 0 JRNL AUTH M.SATO,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN COLLAGEN JRNL TITL 2 ALPHA-1(XX) CHAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025526. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N, 13C; 20MM REMARK 210 D-TRIS HCL; 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 52 -175.36 -69.28 REMARK 500 1 PRO A 61 2.97 -69.74 REMARK 500 1 ARG A 95 140.73 -175.05 REMARK 500 1 PRO A 97 -168.17 -69.79 REMARK 500 2 SER A 2 98.76 -56.26 REMARK 500 2 PRO A 22 2.03 -69.82 REMARK 500 2 GLU A 50 45.00 -103.27 REMARK 500 2 GLU A 52 156.90 -39.28 REMARK 500 2 PRO A 61 3.45 -69.81 REMARK 500 2 PRO A 97 -168.60 -69.80 REMARK 500 3 ALA A 14 48.68 -75.63 REMARK 500 3 PRO A 47 0.07 -69.77 REMARK 500 3 PRO A 61 3.49 -69.75 REMARK 500 3 PRO A 97 -165.19 -69.72 REMARK 500 3 SER A 99 30.94 -84.97 REMARK 500 3 PRO A 101 98.18 -69.75 REMARK 500 4 SER A 6 35.78 -95.40 REMARK 500 4 ALA A 14 47.91 -76.07 REMARK 500 4 GLU A 51 100.63 -50.36 REMARK 500 4 GLU A 52 138.42 -170.07 REMARK 500 4 PRO A 61 3.35 -69.80 REMARK 500 4 PRO A 97 -169.30 -69.75 REMARK 500 5 SER A 6 112.51 -165.40 REMARK 500 5 PRO A 22 2.44 -69.74 REMARK 500 5 PRO A 47 0.86 -69.74 REMARK 500 5 GLU A 51 86.27 -67.20 REMARK 500 5 PRO A 61 3.53 -69.74 REMARK 500 5 ARG A 95 143.82 -175.03 REMARK 500 5 PRO A 97 -171.19 -69.74 REMARK 500 5 PRO A 101 86.35 -69.71 REMARK 500 5 SER A 102 174.73 -57.67 REMARK 500 6 SER A 3 130.58 -172.12 REMARK 500 6 SER A 6 46.07 36.37 REMARK 500 6 PRO A 8 -171.64 -69.72 REMARK 500 6 PRO A 22 1.14 -69.80 REMARK 500 6 LYS A 48 93.11 -58.70 REMARK 500 6 GLU A 50 64.65 -101.24 REMARK 500 6 PRO A 61 3.56 -69.82 REMARK 500 6 SER A 87 -176.14 -69.04 REMARK 500 6 ARG A 93 95.27 -65.39 REMARK 500 6 PRO A 97 -165.11 -69.82 REMARK 500 7 PRO A 8 97.19 -69.75 REMARK 500 7 PRO A 22 1.28 -69.79 REMARK 500 7 ALA A 33 56.90 -117.58 REMARK 500 7 PRO A 61 3.47 -69.77 REMARK 500 7 ARG A 95 143.52 -174.78 REMARK 500 7 PRO A 97 -172.87 -69.75 REMARK 500 7 PRO A 101 98.02 -69.77 REMARK 500 8 SER A 3 95.63 -35.04 REMARK 500 8 PRO A 22 2.19 -69.71 REMARK 500 REMARK 500 THIS ENTRY HAS 129 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101482.1 RELATED DB: TARGETDB DBREF 2DKM A 8 98 UNP Q9P218 COKA1_HUMAN 473 563 SEQADV 2DKM GLY A 1 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 2 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 3 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM GLY A 4 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 5 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 6 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM GLY A 7 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 99 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM GLY A 100 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM PRO A 101 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 102 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM SER A 103 UNP Q9P218 CLONING ARTIFACT SEQADV 2DKM GLY A 104 UNP Q9P218 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY PRO LEU PRO PRO PRO ARG SEQRES 2 A 104 ALA LEU THR LEU ALA ALA VAL THR PRO ARG THR VAL HIS SEQRES 3 A 104 LEU THR TRP GLN PRO SER ALA GLY ALA THR HIS TYR LEU SEQRES 4 A 104 VAL ARG CYS SER PRO ALA SER PRO LYS GLY GLU GLU GLU SEQRES 5 A 104 GLU ARG GLU VAL GLN VAL GLY ARG PRO GLU VAL LEU LEU SEQRES 6 A 104 ASP GLY LEU GLU PRO GLY ARG ASP TYR GLU VAL SER VAL SEQRES 7 A 104 GLN SER LEU ARG GLY PRO GLU GLY SER GLU ALA ARG GLY SEQRES 8 A 104 ILE ARG ALA ARG THR PRO THR SER GLY PRO SER SER GLY SHEET 1 A 3 THR A 16 VAL A 20 0 SHEET 2 A 3 THR A 24 THR A 28 -1 O THR A 28 N THR A 16 SHEET 3 A 3 GLU A 62 ASP A 66 -1 O LEU A 65 N VAL A 25 SHEET 1 B 4 ARG A 54 VAL A 58 0 SHEET 2 B 4 HIS A 37 PRO A 44 -1 N VAL A 40 O VAL A 56 SHEET 3 B 4 TYR A 74 LEU A 81 -1 O GLU A 75 N SER A 43 SHEET 4 B 4 ARG A 90 ARG A 93 -1 O ARG A 90 N VAL A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1