HEADER PROTEIN TRANSPORT 14-APR-06 2DKR TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN LIN-7 HOMOLOG B COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN-7 HOMOLOG B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: LIN-7B, HLIN7B, MAMMALIAN LIN-SEVEN PROTEIN 2, MALS-2, COMPND 6 VERTEBRATE LIN 7 HOMOLOG 2, VELI-2 PROTEIN, HVELI2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LIN7B, MALS2, VELI2, UNQ3116/PRO10200; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050516-07; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS LIN-7B, PDZ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DKR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DKR 1 VERSN REVDAT 1 14-OCT-06 2DKR 0 JRNL AUTH T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN FROM HUMAN LIN-7 JRNL TITL 2 HOMOLOG B JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025531. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3, 90% H2O; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 39 3.93 -69.72 REMARK 500 1 ALA A 78 170.39 -54.27 REMARK 500 2 PRO A 39 6.35 -69.76 REMARK 500 2 ALA A 78 170.17 -53.48 REMARK 500 3 ASP A 15 -39.64 -39.29 REMARK 500 3 LYS A 26 -63.94 -90.23 REMARK 500 3 PRO A 39 3.16 -69.68 REMARK 500 4 PRO A 39 7.00 -69.76 REMARK 500 5 ASP A 15 -33.56 -36.92 REMARK 500 5 PRO A 39 6.58 -69.75 REMARK 500 5 ASP A 53 107.57 -52.27 REMARK 500 5 SER A 62 106.14 -55.07 REMARK 500 5 GLN A 67 175.61 -52.37 REMARK 500 6 ASP A 15 -38.17 -36.94 REMARK 500 6 PRO A 39 2.98 -69.74 REMARK 500 6 GLU A 64 -38.87 -39.06 REMARK 500 6 PRO A 90 2.24 -69.71 REMARK 500 7 ASP A 15 -39.51 -37.22 REMARK 500 7 ASN A 29 102.12 -56.10 REMARK 500 7 PRO A 39 3.67 -69.78 REMARK 500 7 GLU A 64 101.97 -54.99 REMARK 500 8 SER A 6 173.75 -52.16 REMARK 500 8 PRO A 39 6.25 -69.70 REMARK 500 9 ASP A 15 -38.18 -38.81 REMARK 500 9 LYS A 26 -67.44 -92.06 REMARK 500 9 PRO A 39 4.63 -69.72 REMARK 500 9 GLU A 64 -34.66 -38.70 REMARK 500 9 ALA A 78 178.17 -59.42 REMARK 500 10 ASP A 15 -36.54 -39.32 REMARK 500 10 LYS A 26 -60.71 -93.23 REMARK 500 10 PRO A 39 2.86 -69.78 REMARK 500 10 ASP A 53 108.13 -55.34 REMARK 500 10 ALA A 78 171.19 -55.87 REMARK 500 11 ASN A 29 103.12 -52.10 REMARK 500 11 PRO A 90 87.83 -69.74 REMARK 500 12 ASP A 15 -33.23 -38.95 REMARK 500 12 LEU A 18 -65.75 -97.96 REMARK 500 12 LYS A 26 -62.26 -93.64 REMARK 500 12 PRO A 39 4.55 -69.77 REMARK 500 12 ASP A 53 108.51 -52.05 REMARK 500 13 ASP A 15 -38.15 -34.43 REMARK 500 13 LYS A 26 -65.58 -95.51 REMARK 500 13 PRO A 39 3.69 -69.72 REMARK 500 14 ASP A 15 -32.43 -38.62 REMARK 500 14 GLU A 16 -36.37 -34.32 REMARK 500 14 LYS A 26 -65.69 -90.83 REMARK 500 14 PRO A 39 3.13 -69.77 REMARK 500 15 LEU A 18 -61.08 -97.53 REMARK 500 15 PRO A 39 5.12 -69.72 REMARK 500 15 ALA A 78 170.36 -55.90 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012041.1 RELATED DB: TARGETDB DBREF 2DKR A 8 87 UNP Q9HAP6 LIN7B_HUMAN 93 172 SEQADV 2DKR GLY A 1 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 2 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 3 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR GLY A 4 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 5 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 6 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR GLY A 7 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 88 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR GLY A 89 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR PRO A 90 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 91 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR SER A 92 UNP Q9HAP6 CLONING ARTIFACT SEQADV 2DKR GLY A 93 UNP Q9HAP6 CLONING ARTIFACT SEQRES 1 A 93 GLY SER SER GLY SER SER GLY VAL VAL GLU LEU PRO LYS SEQRES 2 A 93 THR ASP GLU GLY LEU GLY PHE ASN ILE MET GLY GLY LYS SEQRES 3 A 93 GLU GLN ASN SER PRO ILE TYR ILE SER ARG VAL ILE PRO SEQRES 4 A 93 GLY GLY VAL ALA ASP ARG HIS GLY GLY LEU LYS ARG GLY SEQRES 5 A 93 ASP GLN LEU LEU SER VAL ASN GLY VAL SER VAL GLU GLY SEQRES 6 A 93 GLU GLN HIS GLU LYS ALA VAL GLU LEU LEU LYS ALA ALA SEQRES 7 A 93 GLN GLY SER VAL LYS LEU VAL VAL ARG SER GLY PRO SER SEQRES 8 A 93 SER GLY HELIX 1 1 GLY A 41 GLY A 47 1 7 HELIX 2 2 GLN A 67 ALA A 78 1 12 SHEET 1 A 4 VAL A 8 PRO A 12 0 SHEET 2 A 4 SER A 81 VAL A 86 -1 O LEU A 84 N VAL A 9 SHEET 3 A 4 LEU A 55 VAL A 58 -1 N SER A 57 O VAL A 85 SHEET 4 A 4 VAL A 61 SER A 62 -1 O VAL A 61 N VAL A 58 SHEET 1 B 2 PHE A 20 MET A 23 0 SHEET 2 B 2 TYR A 33 VAL A 37 -1 O ARG A 36 N ASN A 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1