data_2DKU # _entry.id 2DKU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DKU pdb_00002dku 10.2210/pdb2dku/pdb RCSB RCSB025534 ? ? WWPDB D_1000025534 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002001528.4 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DKU _pdbx_database_status.recvd_initial_deposition_date 2006-04-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, K.' 1 'Kurosaki, C.' 2 'Yoshida, M.' 3 'Hayashi, F.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of the third Ig-like domain of human KIAA1556 protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, K.' 1 ? primary 'Kurosaki, C.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Hayashi, F.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'KIAA1556 protein' _entity.formula_weight 10923.069 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'ig-like domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC DIGQAQSRAQLLVQGRRSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTC DIGQAQSRAQLLVQGRRSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002001528.4 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 ASN n 1 10 CYS n 1 11 PHE n 1 12 THR n 1 13 GLU n 1 14 GLU n 1 15 LEU n 1 16 THR n 1 17 ASN n 1 18 LEU n 1 19 GLN n 1 20 VAL n 1 21 GLU n 1 22 GLU n 1 23 LYS n 1 24 GLY n 1 25 THR n 1 26 ALA n 1 27 VAL n 1 28 PHE n 1 29 THR n 1 30 CYS n 1 31 LYS n 1 32 THR n 1 33 GLU n 1 34 HIS n 1 35 PRO n 1 36 ALA n 1 37 ALA n 1 38 THR n 1 39 VAL n 1 40 THR n 1 41 TRP n 1 42 ARG n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 LEU n 1 47 GLU n 1 48 LEU n 1 49 ARG n 1 50 ALA n 1 51 SER n 1 52 GLY n 1 53 LYS n 1 54 HIS n 1 55 GLN n 1 56 PRO n 1 57 SER n 1 58 GLN n 1 59 GLU n 1 60 GLY n 1 61 LEU n 1 62 THR n 1 63 LEU n 1 64 ARG n 1 65 LEU n 1 66 THR n 1 67 ILE n 1 68 SER n 1 69 ALA n 1 70 LEU n 1 71 GLU n 1 72 LYS n 1 73 ALA n 1 74 ASP n 1 75 SER n 1 76 ASP n 1 77 THR n 1 78 TYR n 1 79 THR n 1 80 CYS n 1 81 ASP n 1 82 ILE n 1 83 GLY n 1 84 GLN n 1 85 ALA n 1 86 GLN n 1 87 SER n 1 88 ARG n 1 89 ALA n 1 90 GLN n 1 91 LEU n 1 92 LEU n 1 93 VAL n 1 94 GLN n 1 95 GLY n 1 96 ARG n 1 97 ARG n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA1556 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051017-17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OBSCN_HUMAN _struct_ref.pdbx_db_accession Q5VST9 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 2915 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DKU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5VST9 _struct_ref_seq.db_align_beg 2915 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 3004 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DKU GLY A 1 ? UNP Q5VST9 ? ? 'cloning artifact' 1 1 1 2DKU SER A 2 ? UNP Q5VST9 ? ? 'cloning artifact' 2 2 1 2DKU SER A 3 ? UNP Q5VST9 ? ? 'cloning artifact' 3 3 1 2DKU GLY A 4 ? UNP Q5VST9 ? ? 'cloning artifact' 4 4 1 2DKU SER A 5 ? UNP Q5VST9 ? ? 'cloning artifact' 5 5 1 2DKU SER A 6 ? UNP Q5VST9 ? ? 'cloning artifact' 6 6 1 2DKU GLY A 7 ? UNP Q5VST9 ? ? 'cloning artifact' 7 7 1 2DKU SER A 98 ? UNP Q5VST9 ? ? 'cloning artifact' 98 8 1 2DKU GLY A 99 ? UNP Q5VST9 ? ? 'cloning artifact' 99 9 1 2DKU PRO A 100 ? UNP Q5VST9 ? ? 'cloning artifact' 100 10 1 2DKU SER A 101 ? UNP Q5VST9 ? ? 'cloning artifact' 101 11 1 2DKU SER A 102 ? UNP Q5VST9 ? ? 'cloning artifact' 102 12 1 2DKU GLY A 103 ? UNP Q5VST9 ? ? 'cloning artifact' 103 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.07mM 13C, 15N-labeled protein; 20mM d-Tris-HCl (pH7.0 ); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 10% D2O; 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O; 90% H2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 900 ? 2 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 2DKU _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2DKU _pdbx_nmr_details.text 'spectrometer_id 1 for 3D_13C-separated_NOESY; spectrometer_id 2 for 3D_15N-separated_NOESY' # _pdbx_nmr_ensemble.entry_id 2DKU _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DKU _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DKU _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DKU _struct.title 'Solution structure of the third Ig-like domain of human KIAA1556 protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DKU _struct_keywords.pdbx_keywords 'CONTRACTILE PROTEIN' _struct_keywords.text ;beta-sandwich, IG-fold, Obscurin, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, CONTRACTILE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 18 ? GLU A 21 ? LEU A 18 GLU A 21 A 2 ALA A 89 ? GLN A 94 ? ALA A 89 GLN A 94 A 3 THR A 77 ? ASP A 81 ? THR A 77 ASP A 81 A 4 THR A 40 ? LYS A 43 ? THR A 40 LYS A 43 B 1 THR A 25 ? LYS A 31 ? THR A 25 LYS A 31 B 2 THR A 62 ? SER A 68 ? THR A 62 SER A 68 B 3 HIS A 54 ? GLU A 59 ? HIS A 54 GLU A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 20 ? N VAL A 20 O GLN A 94 ? O GLN A 94 A 2 3 O ALA A 89 ? O ALA A 89 N TYR A 78 ? N TYR A 78 A 3 4 O THR A 79 ? O THR A 79 N ARG A 42 ? N ARG A 42 B 1 2 N CYS A 30 ? N CYS A 30 O LEU A 63 ? O LEU A 63 B 2 3 O THR A 62 ? O THR A 62 N GLU A 59 ? N GLU A 59 # _database_PDB_matrix.entry_id 2DKU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DKU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 CYS 10 10 10 CYS CYS A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 VAL 20 20 20 VAL VAL A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 LYS 31 31 31 LYS LYS A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 TRP 41 41 41 TRP TRP A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 ARG 49 49 49 ARG ARG A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 THR 66 66 66 THR THR A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLY 103 103 103 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-14 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 15 ? ? -58.25 -175.02 2 1 ASN A 17 ? ? -36.57 130.26 3 1 THR A 25 ? ? -165.50 105.82 4 1 PRO A 35 ? ? -69.71 89.96 5 1 ALA A 50 ? ? -46.77 104.56 6 1 LYS A 53 ? ? -90.02 -62.37 7 1 LEU A 70 ? ? -42.35 164.60 8 1 ASP A 74 ? ? -38.81 -30.94 9 1 SER A 75 ? ? -52.47 103.67 10 1 GLN A 94 ? ? -64.47 -178.72 11 2 GLU A 22 ? ? -36.07 153.74 12 2 PRO A 35 ? ? -69.76 88.34 13 2 ALA A 50 ? ? -45.68 102.73 14 2 LEU A 70 ? ? -49.52 175.66 15 2 SER A 75 ? ? -46.38 98.00 16 3 ASN A 17 ? ? -39.07 135.52 17 3 GLU A 22 ? ? -46.57 154.98 18 3 PRO A 35 ? ? -69.81 82.68 19 3 ALA A 50 ? ? -42.08 102.53 20 3 SER A 75 ? ? -45.36 94.09 21 3 SER A 101 ? ? -47.17 159.60 22 4 SER A 2 ? ? -163.73 108.18 23 4 LEU A 15 ? ? -56.85 179.61 24 4 GLU A 22 ? ? -48.14 154.13 25 4 PRO A 35 ? ? -69.79 80.43 26 4 ALA A 50 ? ? -44.94 105.70 27 4 LEU A 61 ? ? 48.08 29.43 28 4 LYS A 72 ? ? -37.68 -31.14 29 4 SER A 75 ? ? -47.87 99.31 30 4 GLN A 94 ? ? -57.97 -179.33 31 5 ALA A 8 ? ? -51.60 178.09 32 5 GLU A 22 ? ? -40.53 155.57 33 5 THR A 25 ? ? -163.89 115.30 34 5 PRO A 35 ? ? -69.83 86.87 35 5 ALA A 50 ? ? -56.29 104.04 36 5 LEU A 61 ? ? 44.89 25.81 37 5 LEU A 70 ? ? -52.52 174.71 38 5 GLU A 71 ? ? -174.38 147.95 39 5 SER A 75 ? ? -39.96 98.49 40 5 ARG A 96 ? ? -61.04 -72.81 41 6 LEU A 15 ? ? -54.95 178.30 42 6 ASN A 17 ? ? -38.74 124.90 43 6 GLU A 22 ? ? -41.99 159.91 44 6 PRO A 35 ? ? -69.69 96.09 45 6 LYS A 53 ? ? -81.33 -70.70 46 6 LEU A 61 ? ? 43.56 29.60 47 6 SER A 75 ? ? -45.65 100.93 48 6 PRO A 100 ? ? -69.76 91.18 49 7 GLU A 22 ? ? -43.99 154.54 50 7 PRO A 35 ? ? -69.74 83.18 51 7 ALA A 50 ? ? -43.22 101.98 52 7 LYS A 53 ? ? -93.51 -67.61 53 7 LEU A 70 ? ? -48.70 171.74 54 7 SER A 75 ? ? -50.64 95.49 55 7 SER A 98 ? ? 37.26 43.55 56 8 PRO A 35 ? ? -69.73 99.20 57 8 ALA A 50 ? ? -45.47 102.88 58 8 SER A 75 ? ? -46.89 107.76 59 8 ARG A 97 ? ? -36.23 95.59 60 9 LEU A 15 ? ? -56.40 175.07 61 9 PRO A 35 ? ? -69.76 99.42 62 9 ALA A 50 ? ? -55.15 102.44 63 9 LEU A 61 ? ? 38.50 30.82 64 9 LEU A 70 ? ? -57.19 176.97 65 9 ASP A 74 ? ? -37.49 -39.75 66 9 SER A 75 ? ? -52.29 106.60 67 10 LEU A 15 ? ? -59.16 173.42 68 10 GLU A 22 ? ? -40.62 162.06 69 10 THR A 25 ? ? -164.43 115.90 70 10 PRO A 35 ? ? -69.76 97.96 71 10 LYS A 72 ? ? -38.47 -34.47 72 10 SER A 75 ? ? -47.87 99.77 73 10 ARG A 96 ? ? -51.55 -179.37 74 11 GLU A 22 ? ? -40.58 161.73 75 11 THR A 25 ? ? -165.63 109.70 76 11 PRO A 35 ? ? -69.68 91.86 77 11 ALA A 50 ? ? -58.57 103.55 78 11 LYS A 53 ? ? -79.75 -70.59 79 11 LEU A 61 ? ? 45.71 28.02 80 11 LEU A 70 ? ? -51.92 -177.38 81 11 GLU A 71 ? ? -172.63 149.54 82 11 LYS A 72 ? ? -47.92 -19.90 83 11 SER A 75 ? ? -59.08 101.19 84 11 ARG A 96 ? ? -39.14 158.92 85 11 ARG A 97 ? ? -38.14 -29.48 86 12 ALA A 8 ? ? -35.32 148.56 87 12 GLU A 22 ? ? -46.46 152.68 88 12 PRO A 35 ? ? -69.79 88.34 89 12 ALA A 50 ? ? -49.96 102.94 90 12 LYS A 53 ? ? -81.58 -70.57 91 12 LEU A 70 ? ? -58.68 179.69 92 12 SER A 75 ? ? -44.98 97.13 93 12 GLN A 94 ? ? -59.81 -72.50 94 13 LEU A 15 ? ? -54.08 172.18 95 13 PHE A 28 ? ? -63.80 98.93 96 13 PRO A 35 ? ? -69.79 90.76 97 13 SER A 75 ? ? -50.62 102.09 98 13 SER A 98 ? ? -91.86 35.72 99 14 SER A 3 ? ? -98.10 42.94 100 14 LEU A 15 ? ? -59.14 173.40 101 14 THR A 25 ? ? -161.05 115.77 102 14 PHE A 28 ? ? -66.87 97.74 103 14 PRO A 35 ? ? -69.83 86.25 104 14 ALA A 36 ? ? -42.02 158.53 105 14 LEU A 70 ? ? -48.37 177.70 106 14 SER A 75 ? ? -48.02 97.30 107 14 GLN A 94 ? ? -39.34 -75.18 108 14 SER A 101 ? ? -83.85 39.89 109 15 GLU A 22 ? ? -37.62 155.83 110 15 PHE A 28 ? ? -69.72 98.20 111 15 ALA A 50 ? ? -42.51 104.08 112 15 LEU A 70 ? ? -49.00 175.62 113 15 GLU A 71 ? ? -174.17 148.62 114 15 SER A 75 ? ? -45.65 100.19 115 15 SER A 102 ? ? -100.04 -61.75 116 16 GLU A 22 ? ? -43.10 166.24 117 16 PRO A 35 ? ? -69.75 88.66 118 16 ALA A 36 ? ? -45.82 158.28 119 16 ALA A 50 ? ? -42.17 103.92 120 16 ALA A 69 ? ? 70.79 44.96 121 16 LEU A 70 ? ? -56.53 170.56 122 16 SER A 75 ? ? -41.80 103.31 123 16 ARG A 97 ? ? -40.88 103.16 124 17 SER A 3 ? ? -54.40 101.29 125 17 LEU A 15 ? ? -58.51 171.81 126 17 PRO A 35 ? ? -69.71 91.54 127 17 ALA A 50 ? ? -56.52 101.96 128 17 LEU A 70 ? ? -55.23 170.88 129 17 ASP A 74 ? ? -39.06 -35.59 130 17 SER A 75 ? ? -55.19 96.30 131 17 ARG A 96 ? ? -46.69 153.70 132 17 ARG A 97 ? ? -34.52 137.60 133 17 SER A 98 ? ? 71.86 48.98 134 18 LEU A 15 ? ? -56.84 178.12 135 18 THR A 25 ? ? -165.14 111.09 136 18 PRO A 35 ? ? -69.73 87.73 137 18 ALA A 36 ? ? -48.28 167.91 138 18 LEU A 70 ? ? -59.20 173.61 139 18 SER A 75 ? ? -55.42 96.40 140 18 ARG A 97 ? ? -92.38 -69.11 141 18 SER A 98 ? ? -46.10 159.12 142 18 PRO A 100 ? ? -69.76 -177.58 143 19 SER A 2 ? ? -37.65 121.17 144 19 PRO A 35 ? ? -69.78 86.85 145 19 ALA A 36 ? ? -47.02 154.41 146 19 ALA A 50 ? ? -52.83 104.49 147 19 LEU A 70 ? ? -57.29 176.83 148 19 SER A 75 ? ? -46.71 97.52 149 19 PRO A 100 ? ? -69.77 95.51 150 20 LEU A 15 ? ? -53.16 171.75 151 20 ASN A 17 ? ? -38.72 132.84 152 20 GLU A 22 ? ? -39.52 156.07 153 20 THR A 25 ? ? -161.45 110.67 154 20 PRO A 35 ? ? -69.77 79.99 155 20 GLU A 59 ? ? -163.06 106.07 156 20 SER A 75 ? ? -44.76 95.04 157 20 SER A 101 ? ? 74.55 51.88 #