HEADER CONTRACTILE PROTEIN 14-APR-06 2DKU TITLE SOLUTION STRUCTURE OF THE THIRD IG-LIKE DOMAIN OF HUMAN KIAA1556 TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA1556 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA1556; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051017-17; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, IG-FOLD, OBSCURIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, CONTRACTILE KEYWDS 4 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DKU 1 REMARK REVDAT 3 09-MAR-22 2DKU 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DKU 1 VERSN REVDAT 1 14-OCT-06 2DKU 0 JRNL AUTH K.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD IG-LIKE DOMAIN OF HUMAN JRNL TITL 2 KIAA1556 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025534. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.07MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL (PH7.0 ); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3, 10% REMARK 210 D2O; 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_13C-SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_15N-SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 15 -175.02 -58.25 REMARK 500 1 ASN A 17 130.26 -36.57 REMARK 500 1 THR A 25 105.82 -165.50 REMARK 500 1 PRO A 35 89.96 -69.71 REMARK 500 1 ALA A 50 104.56 -46.77 REMARK 500 1 LYS A 53 -62.37 -90.02 REMARK 500 1 LEU A 70 164.60 -42.35 REMARK 500 1 ASP A 74 -30.94 -38.81 REMARK 500 1 SER A 75 103.67 -52.47 REMARK 500 1 GLN A 94 -178.72 -64.47 REMARK 500 2 GLU A 22 153.74 -36.07 REMARK 500 2 PRO A 35 88.34 -69.76 REMARK 500 2 ALA A 50 102.73 -45.68 REMARK 500 2 LEU A 70 175.66 -49.52 REMARK 500 2 SER A 75 98.00 -46.38 REMARK 500 3 ASN A 17 135.52 -39.07 REMARK 500 3 GLU A 22 154.98 -46.57 REMARK 500 3 PRO A 35 82.68 -69.81 REMARK 500 3 ALA A 50 102.53 -42.08 REMARK 500 3 SER A 75 94.09 -45.36 REMARK 500 3 SER A 101 159.60 -47.17 REMARK 500 4 SER A 2 108.18 -163.73 REMARK 500 4 LEU A 15 179.61 -56.85 REMARK 500 4 GLU A 22 154.13 -48.14 REMARK 500 4 PRO A 35 80.43 -69.79 REMARK 500 4 ALA A 50 105.70 -44.94 REMARK 500 4 LEU A 61 29.43 48.08 REMARK 500 4 LYS A 72 -31.14 -37.68 REMARK 500 4 SER A 75 99.31 -47.87 REMARK 500 4 GLN A 94 -179.33 -57.97 REMARK 500 5 ALA A 8 178.09 -51.60 REMARK 500 5 GLU A 22 155.57 -40.53 REMARK 500 5 THR A 25 115.30 -163.89 REMARK 500 5 PRO A 35 86.87 -69.83 REMARK 500 5 ALA A 50 104.04 -56.29 REMARK 500 5 LEU A 61 25.81 44.89 REMARK 500 5 LEU A 70 174.71 -52.52 REMARK 500 5 GLU A 71 147.95 -174.38 REMARK 500 5 SER A 75 98.49 -39.96 REMARK 500 5 ARG A 96 -72.81 -61.04 REMARK 500 6 LEU A 15 178.30 -54.95 REMARK 500 6 ASN A 17 124.90 -38.74 REMARK 500 6 GLU A 22 159.91 -41.99 REMARK 500 6 PRO A 35 96.09 -69.69 REMARK 500 6 LYS A 53 -70.70 -81.33 REMARK 500 6 LEU A 61 29.60 43.56 REMARK 500 6 SER A 75 100.93 -45.65 REMARK 500 6 PRO A 100 91.18 -69.76 REMARK 500 7 GLU A 22 154.54 -43.99 REMARK 500 7 PRO A 35 83.18 -69.74 REMARK 500 REMARK 500 THIS ENTRY HAS 157 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001528.4 RELATED DB: TARGETDB DBREF 2DKU A 8 97 UNP Q5VST9 OBSCN_HUMAN 2915 3004 SEQADV 2DKU GLY A 1 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 2 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 3 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU GLY A 4 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 5 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 6 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU GLY A 7 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 98 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU GLY A 99 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU PRO A 100 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 101 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU SER A 102 UNP Q5VST9 CLONING ARTIFACT SEQADV 2DKU GLY A 103 UNP Q5VST9 CLONING ARTIFACT SEQRES 1 A 103 GLY SER SER GLY SER SER GLY ALA ASN CYS PHE THR GLU SEQRES 2 A 103 GLU LEU THR ASN LEU GLN VAL GLU GLU LYS GLY THR ALA SEQRES 3 A 103 VAL PHE THR CYS LYS THR GLU HIS PRO ALA ALA THR VAL SEQRES 4 A 103 THR TRP ARG LYS GLY LEU LEU GLU LEU ARG ALA SER GLY SEQRES 5 A 103 LYS HIS GLN PRO SER GLN GLU GLY LEU THR LEU ARG LEU SEQRES 6 A 103 THR ILE SER ALA LEU GLU LYS ALA ASP SER ASP THR TYR SEQRES 7 A 103 THR CYS ASP ILE GLY GLN ALA GLN SER ARG ALA GLN LEU SEQRES 8 A 103 LEU VAL GLN GLY ARG ARG SER GLY PRO SER SER GLY SHEET 1 A 4 LEU A 18 GLU A 21 0 SHEET 2 A 4 ALA A 89 GLN A 94 1 O GLN A 94 N VAL A 20 SHEET 3 A 4 THR A 77 ASP A 81 -1 N TYR A 78 O ALA A 89 SHEET 4 A 4 THR A 40 LYS A 43 -1 N ARG A 42 O THR A 79 SHEET 1 B 3 THR A 25 LYS A 31 0 SHEET 2 B 3 THR A 62 SER A 68 -1 O LEU A 63 N CYS A 30 SHEET 3 B 3 HIS A 54 GLU A 59 -1 N GLU A 59 O THR A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1