HEADER HYDROLASE 14-APR-06 2DKV TITLE CRYSTAL STRUCTURE OF CLASS I CHITINASE FROM ORYZA SATIVA L. JAPONICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHITINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOSIDE HYDROLASE; COMPND 5 EC: 3.2.1.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA JAPONICA GROUP; SOURCE 3 ORGANISM_TAXID: 39947; SOURCE 4 STRAIN: JAPONICA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS CLASS I CHITINASE, WHOLE STRUCTURE, ORYZA SATIVA L. JAPONICA, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KEZUKA,Y.NISHIZAWA,T.WATANABE,T.NONAKA REVDAT 5 16-OCT-24 2DKV 1 REMARK REVDAT 4 01-JAN-20 2DKV 1 JRNL SEQADV REVDAT 3 21-APR-10 2DKV 1 JRNL REVDAT 2 24-FEB-09 2DKV 1 VERSN REVDAT 1 01-MAY-07 2DKV 0 JRNL AUTH Y.KEZUKA,M.KOJIMA,R.MIZUNO,K.SUZUKI,T.WATANABE,T.NONAKA JRNL TITL STRUCTURE OF FULL-LENGTH CLASS I CHITINASE FROM RICE JRNL TITL 2 REVEALED BY X-RAY CRYSTALLOGRAPHY AND SMALL-ANGLE X-RAY JRNL TITL 3 SCATTERING. JRNL REF PROTEINS V. 78 2295 2010 JRNL REFN ESSN 1097-0134 JRNL PMID 20544965 JRNL DOI 10.1002/PROT.22742 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.NISHIZAWA,N.KISHIMOTO,A.SAITO,T.HIBI REMARK 1 TITL SEQUENCE VARIATION, DIFFERENTIAL EXPRESSION AND CHROMOSOMAL REMARK 1 TITL 2 LOCATION OF RICE CHITINASE GENES REMARK 1 REF MOL.GEN.GENET. V. 241 1 1993 REMARK 1 REFN ISSN 0026-8925 REMARK 1 PMID 7901749 REMARK 1 DOI 10.1007/BF00280194 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.KEZUKA,K.KITAZAKI,Y.ITOH,J.WATANABE,O.TAKAHA,T.WATANABE, REMARK 1 AUTH 2 Y.NISHIZAWA,T.NONAKA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF PLANT REMARK 1 TITL 2 CLASS I CHITINASE FROM RICE REMARK 1 REF PROTEIN PEPT.LETT. V. 11 401 2004 REMARK 1 REFN ISSN 0929-8665 REMARK 1 PMID 15327374 REMARK 1 DOI 10.2174/0929866043406968 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18386 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 976 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2302 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1946 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3142 ; 1.568 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4530 ; 0.924 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.016 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;37.758 ;23.036 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 301 ;13.414 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.679 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 309 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2628 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 511 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 565 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2019 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1174 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1200 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.126 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.157 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 83 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1784 ; 1.222 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 592 ; 0.257 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2259 ; 1.508 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 2.188 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 3.150 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2DKV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025535. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : TRIANGULAR SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23800 REMARK 200 R SYM FOR SHELL (I) : 0.23800 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8%(W/V) PEG 20000, 0.1M MES, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.81800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.22600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.22600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.72700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.22600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.22600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.90900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.22600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.22600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.72700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.22600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.22600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.90900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.81800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE LINKER PEPTIDE IS MISSING DUE TO POOR ELECTRON DENSITY REMARK 300 IN THE UNIT CELL; THERE ARE TWO POSSIBLE DIFFERENT WAYS OF REMARK 300 CONNECTING THE CATALYTIC AND CHITIN-BINDING DOMAINS TO COMPLETE THE REMARK 300 FULL-LENGTH STRUCTURE AS A BIOLOGICAL UNIT. THE DEPOSITED REMARK 300 COORDINATES IN THE ASYMMETRIC UNIT STAND FOR ONE CANDIDATE SET OF REMARK 300 THE TWO POSSIBLE COMBINATIONS. THE OTHER COMBINATION CAN BE REMARK 300 GENERATED BY MOVING THE CHITIN-BINDING DOMAIN BY THE OPERATION: Y+1/ REMARK 300 2, -X+1/2, Z+1/4. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 32 REMARK 465 GLY A 75 REMARK 465 PRO A 76 REMARK 465 THR A 77 REMARK 465 PRO A 78 REMARK 465 THR A 79 REMARK 465 PRO A 80 REMARK 465 THR A 81 REMARK 465 PRO A 82 REMARK 465 PRO A 83 REMARK 465 SER A 84 REMARK 465 PRO A 85 REMARK 465 SER A 86 REMARK 465 SER A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 SER A 334 REMARK 465 VAL A 335 REMARK 465 GLY A 336 REMARK 465 LEU A 337 REMARK 465 ALA A 338 REMARK 465 GLU A 339 REMARK 465 GLN A 340 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 37 32.95 -72.34 REMARK 500 GLN A 38 13.05 -151.53 REMARK 500 ASP A 65 127.16 -30.12 REMARK 500 LEU A 102 59.23 -94.37 REMARK 500 PHE A 208 135.44 82.70 REMARK 500 ASN A 286 34.79 -153.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 343 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 344 DBREF 2DKV A 33 340 GB 407472 CAA40107 33 340 SEQADV 2DKV MET A 32 GB 407472 INITIATING METHIONINE SEQRES 1 A 309 MET GLU GLN CYS GLY ALA GLN ALA GLY GLY ALA ARG CYS SEQRES 2 A 309 PRO ASN CYS LEU CYS CYS SER ARG TRP GLY TRP CYS GLY SEQRES 3 A 309 THR THR SER ASP PHE CYS GLY ASP GLY CYS GLN SER GLN SEQRES 4 A 309 CYS SER GLY CYS GLY PRO THR PRO THR PRO THR PRO PRO SEQRES 5 A 309 SER PRO SER ASP GLY VAL GLY SER ILE VAL PRO ARG ASP SEQRES 6 A 309 LEU PHE GLU ARG LEU LEU LEU HIS ARG ASN ASP GLY ALA SEQRES 7 A 309 CYS PRO ALA ARG GLY PHE TYR THR TYR GLU ALA PHE LEU SEQRES 8 A 309 ALA ALA ALA ALA ALA PHE PRO ALA PHE GLY GLY THR GLY SEQRES 9 A 309 ASN THR GLU THR ARG LYS ARG GLU VAL ALA ALA PHE LEU SEQRES 10 A 309 GLY GLN THR SER HIS GLU THR THR GLY GLY TRP PRO THR SEQRES 11 A 309 ALA PRO ASP GLY PRO PHE SER TRP GLY TYR CYS PHE LYS SEQRES 12 A 309 GLN GLU GLN ASN PRO PRO SER ASP TYR CYS GLN PRO SER SEQRES 13 A 309 PRO GLU TRP PRO CYS ALA PRO GLY ARG LYS TYR TYR GLY SEQRES 14 A 309 ARG GLY PRO ILE GLN LEU SER PHE ASN PHE ASN TYR GLY SEQRES 15 A 309 PRO ALA GLY ARG ALA ILE GLY VAL ASP LEU LEU SER ASN SEQRES 16 A 309 PRO ASP LEU VAL ALA THR ASP ALA THR VAL SER PHE LYS SEQRES 17 A 309 THR ALA LEU TRP PHE TRP MET THR PRO GLN GLY ASN LYS SEQRES 18 A 309 PRO SER SER HIS ASP VAL ILE THR GLY ARG TRP ALA PRO SEQRES 19 A 309 SER PRO ALA ASP ALA ALA ALA GLY ARG ALA PRO GLY TYR SEQRES 20 A 309 GLY VAL ILE THR ASN ILE VAL ASN GLY GLY LEU GLU CYS SEQRES 21 A 309 GLY HIS GLY PRO ASP ASP ARG VAL ALA ASN ARG ILE GLY SEQRES 22 A 309 PHE TYR GLN ARG TYR CYS GLY ALA PHE GLY ILE GLY THR SEQRES 23 A 309 GLY GLY ASN LEU ASP CYS TYR ASN GLN ARG PRO PHE ASN SEQRES 24 A 309 SER GLY SER SER VAL GLY LEU ALA GLU GLN HET MES A 341 12 HET MES A 342 12 HET MPD A 343 8 HET MPD A 344 8 HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MES 2(C6 H13 N O4 S) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 6 HOH *150(H2 O) HELIX 1 1 CYS A 44 LEU A 48 5 5 HELIX 2 2 THR A 59 GLY A 64 1 6 HELIX 3 3 GLY A 88 ILE A 92 5 5 HELIX 4 4 PRO A 94 LEU A 102 1 9 HELIX 5 5 THR A 117 ALA A 127 1 11 HELIX 6 6 ASN A 136 THR A 156 1 21 HELIX 7 7 GLY A 165 TRP A 169 5 5 HELIX 8 8 PHE A 208 GLY A 220 1 13 HELIX 9 9 ASP A 228 ASP A 233 1 6 HELIX 10 10 ASP A 233 THR A 247 1 15 HELIX 11 11 SER A 254 THR A 260 1 7 HELIX 12 12 SER A 266 ALA A 272 1 7 HELIX 13 13 GLY A 277 CYS A 291 1 15 HELIX 14 14 ASP A 296 PHE A 313 1 18 SHEET 1 A 2 CYS A 49 CYS A 50 0 SHEET 2 A 2 CYS A 56 GLY A 57 -1 O GLY A 57 N CYS A 49 SSBOND 1 CYS A 35 CYS A 50 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 56 1555 1555 2.04 SSBOND 3 CYS A 47 CYS A 74 1555 1555 2.02 SSBOND 4 CYS A 49 CYS A 63 1555 1555 2.01 SSBOND 5 CYS A 67 CYS A 71 1555 1555 2.05 SSBOND 6 CYS A 110 CYS A 172 1555 1555 2.09 SSBOND 7 CYS A 184 CYS A 192 1555 1555 2.03 SSBOND 8 CYS A 291 CYS A 323 1555 1555 2.05 SITE 1 AC1 9 ILE A 204 GLN A 205 LEU A 206 SER A 207 SITE 2 AC1 9 ASN A 211 PHE A 244 VAL A 285 ASN A 286 SITE 3 AC1 9 HOH A 471 SITE 1 AC2 9 PRO A 45 ASN A 46 PRO A 179 PRO A 180 SITE 2 AC2 9 SER A 181 ASP A 182 PRO A 295 ASP A 297 SITE 3 AC2 9 HOH A 466 SITE 1 AC3 2 ARG A 142 ILE A 259 SITE 1 AC4 4 GLY A 157 CYS A 172 PHE A 173 PRO A 194 CRYST1 66.452 66.452 123.636 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015049 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008088 0.00000