HEADER SIGNALING PROTEIN 14-APR-06 2DKX TITLE SOLUTION STRUCTURE OF THE SAM_PNT-DOMAIN OF ETS TRANSCRIPTION FACTOR TITLE 2 PDEF (PROSTATE ETS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM POINTED DOMAIN-CONTAINING ETS TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SAM_PNT DOMAIN(RESIDUES 8-90); COMPND 5 SYNONYM: PROSTATE-DERIVED ETS FACTOR, PROSTATE EPITHELIUM-SPECIFIC COMPND 6 ETS TRANSCRIPTION FACTOR, PROSTATE-SPECIFIC ETS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPDEF, PDEF, PSE; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P041108-11; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DKX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DKX 1 VERSN REVDAT 1 14-OCT-06 2DKX 0 JRNL AUTH A.K.GORONCY,M.SATO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SAM_PNT-DOMAIN OF ETS JRNL TITL 2 TRANSCRIPTION FACTOR PDEF (PROSTATE ETS) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : P.GUNTERT ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025537. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM SAM_PNT DOMAIN, 20MM D REMARK 210 -TRIS-HCL, 100MM NACL, 1MM D-DTT, REMARK 210 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.0.17, XWINNMR 2.6, REMARK 210 NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.899A REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 6 159.69 -44.72 REMARK 500 1 TRP A 27 104.14 -51.79 REMARK 500 1 TRP A 38 -73.41 -62.83 REMARK 500 1 ASP A 77 -37.69 -39.98 REMARK 500 1 SER A 91 36.15 -89.75 REMARK 500 2 SER A 6 174.70 -50.29 REMARK 500 2 TRP A 27 106.35 -53.68 REMARK 500 2 LEU A 37 -18.28 -49.55 REMARK 500 2 TRP A 38 -73.09 -70.33 REMARK 500 2 PRO A 47 98.10 -69.73 REMARK 500 2 SER A 91 37.96 -90.69 REMARK 500 3 SER A 2 41.93 70.17 REMARK 500 3 TRP A 27 101.80 -51.59 REMARK 500 3 LEU A 36 -70.03 -82.69 REMARK 500 3 TRP A 38 -73.26 -65.18 REMARK 500 3 SER A 91 36.77 -88.75 REMARK 500 3 SER A 95 42.54 37.49 REMARK 500 4 SER A 91 32.05 -84.34 REMARK 500 5 SER A 2 109.89 -45.94 REMARK 500 5 TRP A 38 -73.24 -65.98 REMARK 500 5 ASP A 77 -39.42 -38.69 REMARK 500 6 SER A 6 179.93 -56.44 REMARK 500 6 TRP A 27 104.99 -48.72 REMARK 500 6 TRP A 38 -73.25 -68.35 REMARK 500 6 LEU A 79 -70.76 -62.12 REMARK 500 6 SER A 91 33.80 -86.44 REMARK 500 7 TRP A 27 104.09 -50.25 REMARK 500 7 TRP A 38 -72.67 -63.53 REMARK 500 7 SER A 91 35.68 -84.29 REMARK 500 8 SER A 3 152.13 -47.61 REMARK 500 8 TRP A 27 104.13 -51.95 REMARK 500 8 LEU A 36 -71.91 -78.28 REMARK 500 8 TRP A 38 -73.36 -61.16 REMARK 500 8 PRO A 47 98.36 -69.73 REMARK 500 8 SER A 91 40.93 -104.62 REMARK 500 9 SER A 6 172.66 -53.68 REMARK 500 9 TRP A 27 98.90 -48.54 REMARK 500 9 LEU A 36 -70.87 -73.85 REMARK 500 9 TRP A 38 -73.33 -64.33 REMARK 500 9 PRO A 47 97.14 -69.77 REMARK 500 9 LEU A 79 -70.07 -62.36 REMARK 500 9 SER A 91 40.80 -101.16 REMARK 500 10 TRP A 27 105.52 -50.65 REMARK 500 10 TRP A 38 -73.37 -63.93 REMARK 500 10 PRO A 47 99.69 -69.71 REMARK 500 10 SER A 91 38.26 -89.05 REMARK 500 11 TRP A 27 105.65 -56.19 REMARK 500 11 LEU A 36 -70.59 -82.82 REMARK 500 11 TRP A 38 -73.27 -63.39 REMARK 500 11 PRO A 47 99.98 -69.80 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012673.1 RELATED DB: TARGETDB DBREF 2DKX A 8 90 UNP O95238 SPDEF_HUMAN 131 213 SEQADV 2DKX GLY A 1 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 2 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 3 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 4 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 5 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 6 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 7 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 91 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 92 UNP O95238 CLONING ARTIFACT SEQADV 2DKX PRO A 93 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 94 UNP O95238 CLONING ARTIFACT SEQADV 2DKX SER A 95 UNP O95238 CLONING ARTIFACT SEQADV 2DKX GLY A 96 UNP O95238 CLONING ARTIFACT SEQRES 1 A 96 GLY SER SER GLY SER SER GLY LEU LYS ASP ILE GLU THR SEQRES 2 A 96 ALA CYS LYS LEU LEU ASN ILE THR ALA ASP PRO MET ASP SEQRES 3 A 96 TRP SER PRO SER ASN VAL GLN LYS TRP LEU LEU TRP THR SEQRES 4 A 96 GLU HIS GLN TYR ARG LEU PRO PRO MET GLY LYS ALA PHE SEQRES 5 A 96 GLN GLU LEU ALA GLY LYS GLU LEU CYS ALA MET SER GLU SEQRES 6 A 96 GLU GLN PHE ARG GLN ARG SER PRO LEU GLY GLY ASP VAL SEQRES 7 A 96 LEU HIS ALA HIS LEU ASP ILE TRP LYS SER ALA ALA SER SEQRES 8 A 96 GLY PRO SER SER GLY HELIX 1 1 LEU A 8 LEU A 17 1 10 HELIX 2 2 ASP A 23 TRP A 27 5 5 HELIX 3 3 ASN A 31 TYR A 43 1 13 HELIX 4 4 MET A 48 GLN A 53 1 6 HELIX 5 5 ALA A 56 MET A 63 1 8 HELIX 6 6 SER A 64 SER A 72 1 9 HELIX 7 7 GLY A 76 SER A 91 1 16 CISPEP 1 SER A 28 PRO A 29 1 -0.12 CISPEP 2 SER A 28 PRO A 29 2 -0.10 CISPEP 3 SER A 28 PRO A 29 3 -0.15 CISPEP 4 SER A 28 PRO A 29 4 -0.08 CISPEP 5 SER A 28 PRO A 29 5 -0.05 CISPEP 6 SER A 28 PRO A 29 6 -0.12 CISPEP 7 SER A 28 PRO A 29 7 -0.09 CISPEP 8 SER A 28 PRO A 29 8 -0.14 CISPEP 9 SER A 28 PRO A 29 9 -0.04 CISPEP 10 SER A 28 PRO A 29 10 -0.11 CISPEP 11 SER A 28 PRO A 29 11 0.03 CISPEP 12 SER A 28 PRO A 29 12 -0.01 CISPEP 13 SER A 28 PRO A 29 13 -0.17 CISPEP 14 SER A 28 PRO A 29 14 -0.12 CISPEP 15 SER A 28 PRO A 29 15 -0.08 CISPEP 16 SER A 28 PRO A 29 16 -0.08 CISPEP 17 SER A 28 PRO A 29 17 -0.09 CISPEP 18 SER A 28 PRO A 29 18 -0.09 CISPEP 19 SER A 28 PRO A 29 19 -0.10 CISPEP 20 SER A 28 PRO A 29 20 -0.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1