data_2DKY # _entry.id 2DKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DKY pdb_00002dky 10.2210/pdb2dky/pdb RCSB RCSB025538 ? ? WWPDB D_1000025538 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DKY _pdbx_database_status.recvd_initial_deposition_date 2006-04-14 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Goroncy, A.K.' 1 'Sato, M.' 2 'Koshiba, S.' 3 'Inoue, M.' 4 'Kigawa, T.' 5 'Yokoyama, S.' 6 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 7 # _citation.id primary _citation.title 'Solution structure of the SAM-domain of Rho-GTPase-activating protein 7' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Goroncy, A.K.' 1 ? primary 'Sato, M.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Inoue, M.' 4 ? primary 'Kigawa, T.' 5 ? primary 'Yokoyama, S.' 6 ? # _cell.entry_id 2DKY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DKY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Rho-GTPase-activating protein 7' _entity.formula_weight 10199.683 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment SAM-domain _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Rho-type GTPase-activating protein 7, Deleted in liver cancer 1 protein, Dlc-1, HP protein, StAR-related lipid transfer protein 12, StARD12, START domain-containing protein 12 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMCRKKPDTMILTQIEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLNKCA VMKLESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMCRKKPDTMILTQIEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLNKCA VMKLESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 CYS n 1 10 ARG n 1 11 LYS n 1 12 LYS n 1 13 PRO n 1 14 ASP n 1 15 THR n 1 16 MET n 1 17 ILE n 1 18 LEU n 1 19 THR n 1 20 GLN n 1 21 ILE n 1 22 GLU n 1 23 ALA n 1 24 LYS n 1 25 GLU n 1 26 ALA n 1 27 CYS n 1 28 ASP n 1 29 TRP n 1 30 LEU n 1 31 ARG n 1 32 ALA n 1 33 THR n 1 34 GLY n 1 35 PHE n 1 36 PRO n 1 37 GLN n 1 38 TYR n 1 39 ALA n 1 40 GLN n 1 41 LEU n 1 42 TYR n 1 43 GLU n 1 44 ASP n 1 45 PHE n 1 46 LEU n 1 47 PHE n 1 48 PRO n 1 49 ILE n 1 50 ASP n 1 51 ILE n 1 52 SER n 1 53 LEU n 1 54 VAL n 1 55 LYS n 1 56 ARG n 1 57 GLU n 1 58 HIS n 1 59 ASP n 1 60 PHE n 1 61 LEU n 1 62 ASP n 1 63 ARG n 1 64 ASP n 1 65 ALA n 1 66 ILE n 1 67 GLU n 1 68 ALA n 1 69 LEU n 1 70 CYS n 1 71 ARG n 1 72 ARG n 1 73 LEU n 1 74 ASN n 1 75 THR n 1 76 LEU n 1 77 ASN n 1 78 LYS n 1 79 CYS n 1 80 ALA n 1 81 VAL n 1 82 MET n 1 83 LYS n 1 84 LEU n 1 85 GLU n 1 86 SER n 1 87 GLY n 1 88 PRO n 1 89 SER n 1 90 SER n 1 91 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'DLC1, ARHGAP7, KIAA1723, STARD12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050207-01 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'CELL-FREE PROTEIN SYNTHESIS' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RHG07_HUMAN _struct_ref.pdbx_db_accession Q96QB1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code MCRKKPDTMILTQIEAKEACDWLRATGFPQYAQLYEDFLFPIDISLVKREHDFLDRDAIEALCRRLNTLNKCAVMKLE _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DKY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 85 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q96QB1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 78 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 85 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DKY GLY A 1 ? UNP Q96QB1 ? ? 'cloning artifact' 1 1 1 2DKY SER A 2 ? UNP Q96QB1 ? ? 'cloning artifact' 2 2 1 2DKY SER A 3 ? UNP Q96QB1 ? ? 'cloning artifact' 3 3 1 2DKY GLY A 4 ? UNP Q96QB1 ? ? 'cloning artifact' 4 4 1 2DKY SER A 5 ? UNP Q96QB1 ? ? 'cloning artifact' 5 5 1 2DKY SER A 6 ? UNP Q96QB1 ? ? 'cloning artifact' 6 6 1 2DKY GLY A 7 ? UNP Q96QB1 ? ? 'cloning artifact' 7 7 1 2DKY SER A 86 ? UNP Q96QB1 ? ? 'cloning artifact' 86 8 1 2DKY GLY A 87 ? UNP Q96QB1 ? ? 'cloning artifact' 87 9 1 2DKY PRO A 88 ? UNP Q96QB1 ? ? 'cloning artifact' 88 10 1 2DKY SER A 89 ? UNP Q96QB1 ? ? 'cloning artifact' 89 11 1 2DKY SER A 90 ? UNP Q96QB1 ? ? 'cloning artifact' 90 12 1 2DKY GLY A 91 ? UNP Q96QB1 ? ? 'cloning artifact' 91 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.08mM SAM DOMAIN, 20mM d-TRIS-HCL, 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DKY _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DKY _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DKY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CYANA 2.0.17 'P.GUNTERT ET AL.' 1 'structure solution' CYANA 2.0.17 'P.GUNTERT ET AL.' 2 collection XwinNMR 3.5 BRUKER 3 processing NMRPipe 20031121 'FRANK DELAGLIO' 4 'data analysis' NMRView 5.0.4 'BRUCE A. JOHNSON' 5 'data analysis' KUJIRA 0.899a 'NAOHIRO KOBAYASHI' 6 # _exptl.entry_id 2DKY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DKY _struct.title 'Solution structure of the SAM-domain of Rho-GTPase-activating protein 7' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DKY _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN' _struct_keywords.text ;CELL-FREE PROTEIN SYNTHESIS, PROTEIN REGULATION, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? GLY A 34 ? THR A 15 GLY A 34 1 ? 20 HELX_P HELX_P2 2 GLN A 37 ? ASP A 44 ? GLN A 37 ASP A 44 1 ? 8 HELX_P HELX_P3 3 ASP A 50 ? HIS A 58 ? ASP A 50 HIS A 58 1 ? 9 HELX_P HELX_P4 4 ASP A 62 ? ALA A 80 ? ASP A 62 ALA A 80 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 1 -0.02 2 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 2 -0.07 3 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 3 0.00 4 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 4 -0.09 5 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 5 -0.06 6 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 6 -0.03 7 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 7 0.00 8 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 8 -0.02 9 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 9 -0.03 10 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 10 -0.05 11 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 11 0.01 12 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 12 0.00 13 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 13 0.02 14 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 14 0.03 15 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 15 0.01 16 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 16 0.03 17 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 17 0.01 18 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 18 -0.06 19 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 19 0.03 20 PHE 47 A . ? PHE 47 A PRO 48 A ? PRO 48 A 20 0.00 # _database_PDB_matrix.entry_id 2DKY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DKY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 ASP 14 14 14 ASP ASP A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 MET 16 16 16 MET MET A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 GLN 20 20 20 GLN GLN A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 TRP 29 29 29 TRP TRP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 PHE 35 35 35 PHE PHE A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLN 37 37 37 GLN GLN A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ASP 44 44 44 ASP ASP A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 HIS 58 58 58 HIS HIS A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 CYS 70 70 70 CYS CYS A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 PRO 88 88 88 PRO PRO A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 GLY 91 91 91 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 13 ? ? -69.70 86.54 2 1 ASP A 14 ? ? -174.79 118.32 3 1 THR A 15 ? ? 36.79 39.34 4 1 PRO A 88 ? ? -69.73 93.58 5 2 ARG A 10 ? ? -91.68 46.89 6 2 HIS A 58 ? ? -96.32 32.50 7 2 LEU A 61 ? ? -45.20 161.30 8 2 LEU A 84 ? ? -76.49 -74.19 9 2 GLU A 85 ? ? -49.76 92.22 10 2 SER A 90 ? ? -45.95 162.28 11 3 SER A 2 ? ? -169.38 106.79 12 3 MET A 16 ? ? -134.96 -53.58 13 3 LEU A 30 ? ? -39.39 -35.22 14 3 PHE A 35 ? ? -109.81 78.71 15 3 SER A 52 ? ? -38.00 -37.44 16 3 HIS A 58 ? ? -99.07 40.10 17 3 LEU A 61 ? ? -43.13 163.25 18 3 MET A 82 ? ? -34.17 -33.74 19 3 GLU A 85 ? ? -170.18 107.18 20 4 ARG A 10 ? ? -116.66 63.29 21 4 LYS A 12 ? ? -117.72 78.62 22 4 THR A 15 ? ? 34.03 40.91 23 4 LEU A 61 ? ? -41.66 163.18 24 4 GLU A 85 ? ? -166.53 108.02 25 5 HIS A 58 ? ? -105.09 50.67 26 5 LEU A 61 ? ? -46.74 164.69 27 5 SER A 90 ? ? -44.21 154.60 28 6 HIS A 58 ? ? -101.12 44.82 29 6 SER A 86 ? ? -80.16 43.57 30 7 ARG A 10 ? ? -174.20 145.12 31 7 THR A 15 ? ? -39.40 106.09 32 7 LEU A 30 ? ? -35.78 -39.85 33 7 PHE A 35 ? ? -107.63 78.79 34 7 PHE A 45 ? ? 70.90 40.35 35 7 HIS A 58 ? ? -101.60 52.61 36 7 LEU A 61 ? ? -49.69 166.11 37 7 MET A 82 ? ? -39.89 -25.63 38 7 GLU A 85 ? ? -36.47 -72.15 39 8 SER A 5 ? ? -166.83 107.13 40 8 LEU A 61 ? ? -49.43 165.60 41 8 LYS A 83 ? ? -34.39 -38.97 42 9 PHE A 45 ? ? 73.87 47.83 43 9 LEU A 61 ? ? -46.40 160.51 44 9 MET A 82 ? ? -35.32 -31.46 45 10 SER A 6 ? ? -166.76 106.38 46 10 LYS A 12 ? ? 35.74 54.77 47 10 THR A 15 ? ? -96.93 40.74 48 10 LEU A 30 ? ? -38.83 -35.36 49 10 PHE A 35 ? ? -107.53 79.00 50 10 HIS A 58 ? ? -98.32 43.48 51 10 PRO A 88 ? ? -69.74 90.53 52 11 PRO A 13 ? ? -69.75 -164.37 53 11 MET A 16 ? ? -123.64 -61.53 54 11 SER A 52 ? ? -39.43 -39.34 55 11 VAL A 54 ? ? -37.75 -33.71 56 11 HIS A 58 ? ? -105.09 40.85 57 11 LEU A 61 ? ? -49.92 167.48 58 11 ALA A 80 ? ? -95.26 -65.98 59 11 VAL A 81 ? ? -39.60 -32.04 60 11 LYS A 83 ? ? -32.87 -39.16 61 11 GLU A 85 ? ? -46.46 159.53 62 11 PRO A 88 ? ? -69.82 -171.51 63 12 HIS A 58 ? ? -91.57 39.49 64 12 MET A 82 ? ? -39.04 -25.72 65 12 SER A 86 ? ? -111.93 76.75 66 13 SER A 6 ? ? -95.11 42.05 67 13 SER A 52 ? ? -39.58 -38.09 68 13 LEU A 61 ? ? -40.99 161.69 69 13 MET A 82 ? ? -37.15 -28.56 70 13 LEU A 84 ? ? -38.96 -29.08 71 13 GLU A 85 ? ? 34.45 47.24 72 14 SER A 5 ? ? -100.84 43.77 73 14 THR A 15 ? ? 34.09 39.60 74 14 HIS A 58 ? ? -97.09 36.75 75 14 LEU A 61 ? ? -48.78 160.87 76 14 SER A 86 ? ? -129.31 -50.53 77 15 PRO A 13 ? ? -69.77 1.38 78 15 HIS A 58 ? ? -99.23 32.61 79 15 LEU A 61 ? ? -42.27 164.49 80 15 MET A 82 ? ? -37.46 -34.03 81 15 SER A 86 ? ? -50.53 172.18 82 16 MET A 8 ? ? -49.62 103.30 83 16 LYS A 11 ? ? -174.96 145.56 84 16 LYS A 12 ? ? -174.97 144.11 85 16 PRO A 13 ? ? -69.81 2.83 86 16 ASP A 14 ? ? 73.27 45.10 87 16 LEU A 61 ? ? -44.07 160.26 88 17 MET A 8 ? ? -45.36 167.61 89 17 VAL A 54 ? ? -37.97 -26.60 90 17 HIS A 58 ? ? -104.41 44.46 91 17 MET A 82 ? ? -34.15 -32.98 92 17 GLU A 85 ? ? -34.99 113.63 93 17 SER A 90 ? ? -58.60 94.59 94 18 SER A 3 ? ? -68.02 93.82 95 18 CYS A 9 ? ? 39.15 42.04 96 18 PHE A 45 ? ? 71.90 46.68 97 18 HIS A 58 ? ? -102.54 41.66 98 18 LEU A 61 ? ? -43.05 165.38 99 18 MET A 82 ? ? -34.01 -33.66 100 19 THR A 15 ? ? 36.81 48.03 101 19 HIS A 58 ? ? -98.80 44.21 102 19 ARG A 71 ? ? -37.72 -38.57 103 19 MET A 82 ? ? -37.50 -28.14 104 20 LEU A 61 ? ? -46.04 166.39 105 20 LEU A 69 ? ? -39.74 -38.55 106 20 ARG A 71 ? ? -38.50 -35.21 107 20 SER A 89 ? ? 36.65 44.33 #