HEADER PROTEIN TRANSPORT 14-APR-06 2DL1 TITLE SOLUTION STRUCTURE OF THE MIT DOMAIN FROM HUMAN SPARTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPARTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIT DOMAIN; COMPND 5 SYNONYM: TRANS-ACTIVATED BY HEPATITIS C VIRUS CORE PROTEIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPG20, KIAA0610, TAHCCP1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050725-19; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS SPARTIN, SPG20, MIT, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DL1 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DL1 1 VERSN REVDAT 1 14-OCT-06 2DL1 0 JRNL AUTH T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE MIT DOMAIN FROM HUMAN SPARTIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DL1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025541. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATION, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -40.12 -137.37 REMARK 500 1 SER A 3 136.54 70.26 REMARK 500 1 PRO A 9 1.82 -69.82 REMARK 500 1 ALA A 10 -39.97 81.70 REMARK 500 1 SER A 57 54.64 -101.58 REMARK 500 1 SER A 60 37.26 -96.61 REMARK 500 1 SER A 63 37.06 -91.72 REMARK 500 1 GLU A 64 37.17 -170.49 REMARK 500 1 LEU A 98 -64.98 -91.74 REMARK 500 1 SER A 101 -64.75 -104.23 REMARK 500 1 GLN A 103 88.02 -165.54 REMARK 500 1 ASN A 104 105.55 56.53 REMARK 500 1 ASP A 105 -87.32 -152.91 REMARK 500 1 LEU A 106 95.58 -39.37 REMARK 500 1 VAL A 109 143.37 -33.66 REMARK 500 1 PRO A 110 91.80 -69.80 REMARK 500 1 SER A 114 127.75 -171.62 REMARK 500 2 SER A 2 52.51 -158.01 REMARK 500 2 SER A 6 156.35 66.57 REMARK 500 2 ALA A 10 -30.13 -37.19 REMARK 500 2 SER A 59 92.31 57.62 REMARK 500 2 SER A 60 44.75 -84.07 REMARK 500 2 LYS A 61 -78.59 -100.51 REMARK 500 2 GLU A 62 88.62 36.33 REMARK 500 2 GLU A 64 -68.99 -171.92 REMARK 500 2 ALA A 99 -91.57 -42.76 REMARK 500 2 GLN A 103 -86.34 -95.49 REMARK 500 2 ASN A 104 76.34 44.89 REMARK 500 2 ASP A 105 -89.26 -60.43 REMARK 500 2 GLN A 107 -179.50 -57.18 REMARK 500 2 GLU A 108 31.29 -150.35 REMARK 500 2 SER A 115 72.23 53.43 REMARK 500 3 SER A 5 -77.85 59.30 REMARK 500 3 GLU A 39 -70.17 -82.09 REMARK 500 3 SER A 57 45.92 -102.49 REMARK 500 3 SER A 60 82.66 42.12 REMARK 500 3 LYS A 61 -44.21 -170.90 REMARK 500 3 PRO A 68 66.83 -69.70 REMARK 500 3 LEU A 98 -71.60 -49.94 REMARK 500 3 ALA A 99 -149.58 33.88 REMARK 500 3 SER A 115 75.22 -115.92 REMARK 500 4 GLU A 8 145.41 68.72 REMARK 500 4 ALA A 10 -28.45 -39.23 REMARK 500 4 LYS A 20 -70.31 -49.99 REMARK 500 4 ASN A 27 -31.40 -37.49 REMARK 500 4 GLU A 62 75.37 -69.03 REMARK 500 4 GLU A 64 65.55 -163.94 REMARK 500 4 LEU A 98 155.13 58.58 REMARK 500 4 ALA A 99 71.25 59.25 REMARK 500 4 SER A 101 109.93 -44.94 REMARK 500 REMARK 500 THIS ENTRY HAS 293 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100594.1 RELATED DB: TARGETDB DBREF 2DL1 A 8 110 UNP Q8N0X7 SPG20_HUMAN 8 111 SEQADV 2DL1 GLY A 1 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 2 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 3 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 GLY A 4 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 5 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 6 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 GLY A 7 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 111 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 GLY A 112 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 PRO A 113 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 114 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 SER A 115 UNP Q8N0X7 CLONING ARTIFACT SEQADV 2DL1 GLY A 116 UNP Q8N0X7 CLONING ARTIFACT SEQRES 1 A 116 GLY SER SER GLY SER SER GLY GLU PRO ALA GLU ILE LYS SEQRES 2 A 116 ILE ILE ARG GLU ALA TYR LYS LYS ALA PHE LEU PHE VAL SEQRES 3 A 116 ASN LYS GLY LEU ASN THR ASP GLU LEU GLY GLN LYS GLU SEQRES 4 A 116 GLU ALA LYS ASN TYR TYR LYS GLN GLY ILE GLY HIS LEU SEQRES 5 A 116 LEU ARG GLY ILE SER ILE SER SER LYS GLU SER GLU HIS SEQRES 6 A 116 THR GLY PRO GLY TRP GLU SER ALA ARG GLN MET GLN GLN SEQRES 7 A 116 LYS MET LYS GLU THR LEU GLN ASN VAL ARG THR ARG LEU SEQRES 8 A 116 GLU ILE LEU GLU LYS GLY LEU ALA THR SER LEU GLN ASN SEQRES 9 A 116 ASP LEU GLN GLU VAL PRO SER GLY PRO SER SER GLY HELIX 1 1 ALA A 10 GLY A 36 1 27 HELIX 2 2 GLN A 37 SER A 57 1 21 HELIX 3 3 PRO A 68 ALA A 99 1 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1