data_2DL9 # _entry.id 2DL9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DL9 pdb_00002dl9 10.2210/pdb2dl9/pdb RCSB RCSB025548 ? ? WWPDB D_1000025548 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002045.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DL9 _pdbx_database_status.recvd_initial_deposition_date 2006-04-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Nagashima, T.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the Ig-like domain of human Leucine-rich repeat-containing protein 4' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Nagashima, T.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Leucine-rich repeat-containing protein 4' _entity.formula_weight 10761.069 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'IG-like domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Brain tumor- associated protein LRRC4, NAG14' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCM VTNVAGNSNASAYLNVSSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCM VTNVAGNSNASAYLNVSSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002045.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 PHE n 1 10 ILE n 1 11 MET n 1 12 ASP n 1 13 ALA n 1 14 PRO n 1 15 ARG n 1 16 ASP n 1 17 LEU n 1 18 ASN n 1 19 ILE n 1 20 SER n 1 21 GLU n 1 22 GLY n 1 23 ARG n 1 24 MET n 1 25 ALA n 1 26 GLU n 1 27 LEU n 1 28 LYS n 1 29 CYS n 1 30 ARG n 1 31 THR n 1 32 PRO n 1 33 PRO n 1 34 MET n 1 35 SER n 1 36 SER n 1 37 VAL n 1 38 LYS n 1 39 TRP n 1 40 LEU n 1 41 LEU n 1 42 PRO n 1 43 ASN n 1 44 GLY n 1 45 THR n 1 46 VAL n 1 47 LEU n 1 48 SER n 1 49 HIS n 1 50 ALA n 1 51 SER n 1 52 ARG n 1 53 HIS n 1 54 PRO n 1 55 ARG n 1 56 ILE n 1 57 SER n 1 58 VAL n 1 59 LEU n 1 60 ASN n 1 61 ASP n 1 62 GLY n 1 63 THR n 1 64 LEU n 1 65 ASN n 1 66 PHE n 1 67 SER n 1 68 HIS n 1 69 VAL n 1 70 LEU n 1 71 LEU n 1 72 SER n 1 73 ASP n 1 74 THR n 1 75 GLY n 1 76 VAL n 1 77 TYR n 1 78 THR n 1 79 CYS n 1 80 MET n 1 81 VAL n 1 82 THR n 1 83 ASN n 1 84 VAL n 1 85 ALA n 1 86 GLY n 1 87 ASN n 1 88 SER n 1 89 ASN n 1 90 ALA n 1 91 SER n 1 92 ALA n 1 93 TYR n 1 94 LEU n 1 95 ASN n 1 96 VAL n 1 97 SER n 1 98 SER n 1 99 GLY n 1 100 PRO n 1 101 SER n 1 102 SER n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'LRRC4, BAG, UNQ554/PRO1111' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050719-19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LRRC4_HUMAN _struct_ref.pdbx_db_accession Q9HBW1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 351 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DL9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9HBW1 _struct_ref_seq.db_align_beg 351 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 442 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 97 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DL9 GLY A 1 ? UNP Q9HBW1 ? ? 'cloning artifact' 1 1 1 2DL9 SER A 2 ? UNP Q9HBW1 ? ? 'cloning artifact' 2 2 1 2DL9 SER A 3 ? UNP Q9HBW1 ? ? 'cloning artifact' 3 3 1 2DL9 GLY A 4 ? UNP Q9HBW1 ? ? 'cloning artifact' 4 4 1 2DL9 SER A 5 ? UNP Q9HBW1 ? ? 'cloning artifact' 5 5 1 2DL9 SER A 6 ? UNP Q9HBW1 ? ? 'cloning artifact' 6 6 1 2DL9 GLY A 7 ? UNP Q9HBW1 ? ? 'cloning artifact' 7 7 1 2DL9 SER A 98 ? UNP Q9HBW1 ? ? 'cloning artifact' 98 8 1 2DL9 GLY A 99 ? UNP Q9HBW1 ? ? 'cloning artifact' 99 9 1 2DL9 PRO A 100 ? UNP Q9HBW1 ? ? 'cloning artifact' 100 10 1 2DL9 SER A 101 ? UNP Q9HBW1 ? ? 'cloning artifact' 101 11 1 2DL9 SER A 102 ? UNP Q9HBW1 ? ? 'cloning artifact' 102 12 1 2DL9 GLY A 103 ? UNP Q9HBW1 ? ? 'cloning artifact' 103 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.26mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3, 90% H2O; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DL9 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DL9 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DL9 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9296 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DL9 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DL9 _struct.title 'Solution structure of the Ig-like domain of human Leucine-rich repeat-containing protein 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DL9 _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;Ig-like domain, Leucine-rich repeat-containing protein 4, Brain tumor associated protein LRRC4, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, MEMBRANE PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 17 ? SER A 20 ? LEU A 17 SER A 20 A 2 ASN A 87 ? SER A 97 ? ASN A 87 SER A 97 A 3 GLY A 75 ? THR A 82 ? GLY A 75 THR A 82 A 4 SER A 36 ? LEU A 41 ? SER A 36 LEU A 41 A 5 THR A 45 ? SER A 48 ? THR A 45 SER A 48 B 1 ALA A 25 ? LEU A 27 ? ALA A 25 LEU A 27 B 2 LEU A 64 ? PHE A 66 ? LEU A 64 PHE A 66 B 3 ILE A 56 ? VAL A 58 ? ILE A 56 VAL A 58 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 17 ? N LEU A 17 O TYR A 93 ? O TYR A 93 A 2 3 O SER A 88 ? O SER A 88 N VAL A 81 ? N VAL A 81 A 3 4 O THR A 78 ? O THR A 78 N LEU A 40 ? N LEU A 40 A 4 5 N TRP A 39 ? N TRP A 39 O LEU A 47 ? O LEU A 47 B 1 2 N ALA A 25 ? N ALA A 25 O PHE A 66 ? O PHE A 66 B 2 3 O ASN A 65 ? O ASN A 65 N SER A 57 ? N SER A 57 # _database_PDB_matrix.entry_id 2DL9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DL9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 MET 24 24 24 MET MET A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 PRO 32 32 32 PRO PRO A . n A 1 33 PRO 33 33 33 PRO PRO A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 ARG 55 55 55 ARG ARG A . n A 1 56 ILE 56 56 56 ILE ILE A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 HIS 68 68 68 HIS HIS A . n A 1 69 VAL 69 69 69 VAL VAL A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 TYR 77 77 77 TYR TYR A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 CYS 79 79 79 CYS CYS A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLY 99 99 99 GLY GLY A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 GLY 103 103 103 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-17 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 8 ? ? -69.80 -175.97 2 1 PHE A 9 ? ? -92.88 39.95 3 1 PRO A 42 ? ? -69.75 2.88 4 1 SER A 51 ? ? -35.40 143.95 5 1 ASP A 61 ? ? -38.61 -37.98 6 1 HIS A 68 ? ? -168.55 104.98 7 1 PRO A 100 ? ? -69.75 -171.28 8 2 SER A 5 ? ? -38.06 108.95 9 2 PRO A 8 ? ? -69.79 -178.77 10 2 PHE A 9 ? ? -78.53 46.04 11 2 PRO A 42 ? ? -69.79 3.68 12 2 SER A 51 ? ? -37.62 146.21 13 3 PRO A 8 ? ? -69.76 -167.99 14 3 PHE A 9 ? ? -107.14 48.03 15 3 MET A 11 ? ? -34.37 -33.49 16 3 ASP A 16 ? ? -34.50 143.34 17 3 LYS A 28 ? ? -58.23 100.70 18 3 PRO A 42 ? ? -69.72 3.02 19 3 SER A 51 ? ? -36.08 153.61 20 3 ILE A 56 ? ? -68.98 96.91 21 4 PRO A 8 ? ? -69.77 -165.99 22 4 ASP A 16 ? ? -34.51 125.83 23 4 PRO A 42 ? ? -69.77 3.44 24 4 SER A 101 ? ? -42.40 109.57 25 4 SER A 102 ? ? -102.17 -61.14 26 5 SER A 6 ? ? 38.56 33.39 27 5 PRO A 8 ? ? -69.80 -175.31 28 5 PHE A 9 ? ? -108.00 40.15 29 5 LYS A 28 ? ? -57.71 104.32 30 5 PRO A 42 ? ? -69.77 3.23 31 5 HIS A 49 ? ? -39.92 -31.87 32 5 SER A 51 ? ? -34.05 143.23 33 6 PRO A 8 ? ? -69.84 -173.55 34 6 PHE A 9 ? ? -101.90 40.59 35 6 PRO A 42 ? ? -69.76 4.26 36 6 SER A 51 ? ? -35.56 150.52 37 6 ALA A 92 ? ? -171.42 134.23 38 6 PRO A 100 ? ? -69.78 -175.03 39 6 SER A 101 ? ? -132.97 -52.03 40 7 SER A 2 ? ? -172.78 129.29 41 7 SER A 3 ? ? -97.45 41.88 42 7 PRO A 8 ? ? -69.79 -168.90 43 7 ASP A 16 ? ? -35.58 136.81 44 7 PRO A 42 ? ? -69.73 2.94 45 7 SER A 51 ? ? -35.34 140.91 46 7 HIS A 53 ? ? -34.21 129.33 47 7 ALA A 92 ? ? -173.30 136.11 48 8 SER A 2 ? ? -46.01 163.09 49 8 PRO A 8 ? ? -69.77 -174.59 50 8 ILE A 10 ? ? -57.41 100.69 51 8 ASP A 16 ? ? -38.77 144.36 52 8 PRO A 42 ? ? -69.77 3.01 53 8 SER A 51 ? ? -34.26 145.41 54 9 SER A 2 ? ? -131.39 -44.95 55 9 PRO A 8 ? ? -69.73 -174.33 56 9 ASP A 12 ? ? -164.83 108.26 57 9 PRO A 42 ? ? -69.74 3.22 58 9 SER A 51 ? ? -34.35 138.28 59 9 HIS A 53 ? ? -34.14 131.44 60 9 ILE A 56 ? ? -69.85 99.13 61 9 SER A 67 ? ? -34.94 -37.57 62 9 HIS A 68 ? ? -168.74 109.73 63 9 ALA A 92 ? ? -170.86 135.02 64 10 PRO A 8 ? ? -69.79 -166.56 65 10 PRO A 42 ? ? -69.76 1.28 66 10 SER A 51 ? ? -46.87 165.56 67 10 HIS A 53 ? ? -36.02 139.11 68 10 PRO A 54 ? ? -69.71 -90.96 69 10 HIS A 68 ? ? -165.39 106.19 70 11 PRO A 8 ? ? -69.80 -172.07 71 11 PHE A 9 ? ? -100.06 41.34 72 11 ASP A 16 ? ? -35.16 130.19 73 11 PRO A 42 ? ? -69.82 3.15 74 11 HIS A 49 ? ? -39.85 -36.75 75 11 SER A 51 ? ? -40.36 161.38 76 11 ILE A 56 ? ? -69.59 99.46 77 11 ALA A 92 ? ? -170.38 129.26 78 12 PRO A 8 ? ? -69.80 -178.51 79 12 PHE A 9 ? ? -85.85 41.20 80 12 PRO A 42 ? ? -69.76 3.22 81 12 HIS A 49 ? ? -35.18 -32.20 82 12 SER A 51 ? ? -39.54 158.28 83 12 HIS A 53 ? ? -35.01 129.61 84 12 HIS A 68 ? ? -170.28 105.06 85 13 PRO A 8 ? ? -69.75 -169.44 86 13 ASP A 16 ? ? -39.17 131.56 87 13 LYS A 28 ? ? -54.77 109.68 88 13 PRO A 42 ? ? -69.73 3.69 89 13 SER A 51 ? ? -34.46 136.89 90 13 SER A 98 ? ? -46.84 158.36 91 14 PRO A 8 ? ? -69.80 -165.50 92 14 PRO A 42 ? ? -69.72 3.63 93 14 SER A 51 ? ? -35.06 139.95 94 14 ARG A 52 ? ? -106.11 49.12 95 14 HIS A 68 ? ? -160.43 106.39 96 15 PRO A 8 ? ? -69.78 -177.64 97 15 PHE A 9 ? ? -87.86 40.40 98 15 ASP A 16 ? ? -38.10 147.75 99 15 PRO A 42 ? ? -69.76 3.20 100 15 SER A 51 ? ? -34.59 147.92 101 15 ASP A 61 ? ? -35.87 -38.73 102 16 PRO A 8 ? ? -69.75 -169.82 103 16 PHE A 9 ? ? -99.88 38.74 104 16 MET A 11 ? ? -36.72 -37.20 105 16 LYS A 28 ? ? -57.07 98.17 106 16 PRO A 42 ? ? -69.76 4.13 107 16 SER A 51 ? ? -39.17 143.64 108 16 ALA A 92 ? ? -172.27 140.35 109 17 PRO A 8 ? ? -69.80 -174.40 110 17 ASP A 16 ? ? -39.68 128.98 111 17 LYS A 28 ? ? -58.50 99.62 112 17 PRO A 42 ? ? -69.71 2.96 113 17 ARG A 52 ? ? -98.22 32.89 114 17 PRO A 54 ? ? -69.78 -90.78 115 17 SER A 98 ? ? -59.04 171.07 116 18 SER A 6 ? ? -174.96 122.63 117 18 PRO A 8 ? ? -69.79 -174.73 118 18 ILE A 10 ? ? -69.47 94.42 119 18 LYS A 28 ? ? -54.44 104.23 120 18 PRO A 42 ? ? -69.77 3.61 121 18 SER A 51 ? ? -34.49 151.06 122 18 ALA A 92 ? ? -171.55 132.36 123 18 PRO A 100 ? ? -69.83 95.11 124 19 PRO A 8 ? ? -69.67 -171.39 125 19 ILE A 10 ? ? -46.87 94.30 126 19 PRO A 42 ? ? -69.75 4.53 127 19 SER A 48 ? ? -175.01 -175.19 128 19 SER A 51 ? ? -37.85 143.55 129 20 PRO A 8 ? ? -69.81 -172.89 130 20 ILE A 10 ? ? -66.63 86.76 131 20 ASP A 16 ? ? -34.52 136.73 132 20 PRO A 42 ? ? -69.73 4.30 133 20 SER A 51 ? ? -34.43 144.87 134 20 ALA A 92 ? ? -173.71 126.98 #