HEADER OXIDOREDUCTASE (CHOH(D)-NAD+(A)) 28-OCT-95 2DLD TITLE D-LACTATE DEHYDROGENASE COMPLEXED WITH NADH AND OXAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: R-LACTATE DEHYDROGENASE; COMPND 5 EC: 1.1.1.28; COMPND 6 OTHER_DETAILS: CRYSTALLIZED IN 11% PEG 4000, 5 MM BIS-TRIS PH 6.8, 75 COMPND 7 MG/ML ENZYME, 3 MM NADH, 10 MM OXAMATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS HELVETICUS; SOURCE 3 ORGANISM_TAXID: 1587 KEYWDS OXIDOREDUCTASE (CHOH(D)-NAD+(A)) EXPDTA X-RAY DIFFRACTION AUTHOR C.R.DUNN,J.J.HOLBROOK REVDAT 4 05-JUN-24 2DLD 1 REMARK LINK REVDAT 3 06-NOV-13 2DLD 1 HETATM HETNAM HET REMARK REVDAT 2 24-FEB-09 2DLD 1 VERSN REVDAT 1 14-MAR-96 2DLD 0 JRNL AUTH N.BERNARD,J.DELCOUR,A.ALVAREZ,A.CORTES,C.WILLIS,J.J.HOLBROOK JRNL TITL DEHYDROGENASES ENGINEERING TO CORRECT SUBSTRATE INHIBITION JRNL TITL 2 IN A COMMERCIAL DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 3 NUMBER OF REFLECTIONS : 16190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.029 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.049 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.019 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.160 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.250 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.360 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.330 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.600 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 27.000; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.800 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.100 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.400 ; 2.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.900 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XENGEN REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18315 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.05000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 37 OG1 THR A 40 1.69 REMARK 500 OD1 ASP B 48 NZ LYS B 73 1.80 REMARK 500 ND2 ASN B 316 O ASP B 327 1.85 REMARK 500 OG SER B 75 OG1 THR B 97 1.87 REMARK 500 NE2 GLN B 54 O LEU B 56 1.97 REMARK 500 O ASN A 18 N GLU A 22 1.98 REMARK 500 O ASP B 87 N GLU B 91 2.06 REMARK 500 NE2 HIS B 297 O1 OXM B 402 2.12 REMARK 500 O GLY A 267 NZ LYS A 271 2.12 REMARK 500 OD2 ASP A 285 NH1 ARG A 289 2.12 REMARK 500 NE2 HIS A 297 O1 OXM A 402 2.14 REMARK 500 NZ LYS A 319 OE1 GLU A 324 2.14 REMARK 500 OD2 ASP B 219 NH1 ARG B 247 2.16 REMARK 500 O LYS B 88 N LEU B 92 2.17 REMARK 500 OD1 ASP A 219 NH1 ARG A 247 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 25 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 PRO A 100 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 120 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET A 129 CA - CB - CG ANGL. DEV. = 11.0 DEGREES REMARK 500 ASP A 133 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 142 CD - NE - CZ ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 142 NH1 - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 142 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 219 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ASP A 219 CB - CG - OD1 ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS A 234 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 MET A 259 CA - CB - CG ANGL. DEV. = 10.2 DEGREES REMARK 500 TYR A 262 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TYR A 262 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 GLU A 263 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 ASP A 264 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 ARG A 282 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 289 CD - NE - CZ ANGL. DEV. = 20.4 DEGREES REMARK 500 ARG A 289 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 LEU A 293 CA - CB - CG ANGL. DEV. = 24.6 DEGREES REMARK 500 ARG B 10 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR B 53 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 TYR B 102 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG B 124 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 135 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 142 CA - CB - CG ANGL. DEV. = 18.9 DEGREES REMARK 500 HIS B 156 CA - CB - CG ANGL. DEV. = 12.2 DEGREES REMARK 500 ARG B 163 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP B 194 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 236 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 238 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP B 241 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 272 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 PRO B 279 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 282 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP B 288 CB - CG - OD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 HIS B 304 CA - CB - CG ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 31.00 81.01 REMARK 500 LYS A 25 -51.32 -19.60 REMARK 500 TYR A 31 -152.83 -118.70 REMARK 500 THR A 32 177.44 179.12 REMARK 500 ALA A 41 -36.98 -35.14 REMARK 500 ALA A 44 21.72 -65.13 REMARK 500 ALA A 67 -71.72 -47.25 REMARK 500 VAL A 81 -24.23 -144.46 REMARK 500 SER A 103 102.45 35.21 REMARK 500 GLN A 121 26.35 84.05 REMARK 500 ARG A 132 33.84 74.72 REMARK 500 LEU A 134 36.22 -58.46 REMARK 500 THR A 139 53.07 -61.88 REMARK 500 ARG A 145 -4.12 -48.00 REMARK 500 HIS A 156 -71.79 -46.90 REMARK 500 LYS A 179 81.36 -49.17 REMARK 500 ASN A 180 101.00 -44.07 REMARK 500 PRO A 181 -39.16 -30.81 REMARK 500 GLU A 182 -74.11 -63.66 REMARK 500 ASP A 194 -16.86 -47.49 REMARK 500 GLN A 199 3.73 -152.46 REMARK 500 VAL A 214 97.68 -64.26 REMARK 500 HIS A 215 39.60 88.65 REMARK 500 SER A 235 -96.69 -113.24 REMARK 500 ASP A 264 30.27 -88.72 REMARK 500 ASN A 270 27.40 48.08 REMARK 500 TYR A 301 93.75 -67.55 REMARK 500 MET A 309 -75.09 -33.20 REMARK 500 VAL A 310 -79.61 -45.67 REMARK 500 LYS A 312 -9.15 -58.08 REMARK 500 ASN A 315 -75.49 -62.55 REMARK 500 ASN A 316 -35.53 -35.75 REMARK 500 SER A 328 73.23 52.69 REMARK 500 ALA A 331 -31.40 -178.73 REMARK 500 LEU A 332 49.85 15.46 REMARK 500 ALA B 23 -69.92 -92.78 REMARK 500 HIS B 24 72.55 -56.01 REMARK 500 ALA B 41 -23.27 -26.63 REMARK 500 ALA B 44 37.97 -72.99 REMARK 500 ALA B 60 -46.68 -12.82 REMARK 500 THR B 62 -32.34 -36.60 REMARK 500 LEU B 63 -71.01 -64.94 REMARK 500 SER B 103 93.08 49.41 REMARK 500 ARG B 132 50.51 82.49 REMARK 500 LEU B 134 22.47 -72.16 REMARK 500 HIS B 156 -74.65 -17.44 REMARK 500 LYS B 179 80.97 -54.53 REMARK 500 ASN B 180 120.47 -34.39 REMARK 500 TYR B 197 16.56 -63.38 REMARK 500 LYS B 198 -3.79 -145.21 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAI B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM B 402 DBREF 2DLD A 2 337 UNP P30901 LDHD_LACHE 1 336 DBREF 2DLD B 2 337 UNP P30901 LDHD_LACHE 1 336 SEQRES 1 A 337 MET THR LYS VAL PHE ALA TYR ALA ILE ARG LYS ASP GLU SEQRES 2 A 337 GLU PRO PHE LEU ASN GLU TRP LYS GLU ALA HIS LYS ASP SEQRES 3 A 337 ILE ASP VAL ASP TYR THR ASP LYS LEU LEU THR PRO GLU SEQRES 4 A 337 THR ALA LYS LEU ALA LYS GLY ALA ASP GLY VAL VAL VAL SEQRES 5 A 337 TYR GLN GLN LEU ASP TYR THR ALA ASP THR LEU GLN ALA SEQRES 6 A 337 LEU ALA ASP ALA GLY VAL THR LYS MET SER LEU ARG ASN SEQRES 7 A 337 VAL GLY VAL ASP ASN ILE ASP MET ASP LYS ALA LYS GLU SEQRES 8 A 337 LEU GLY PHE GLN ILE THR ASN VAL PRO VAL TYR SER PRO SEQRES 9 A 337 ASN ALA ILE ALA GLU HIS ALA ALA ILE GLN ALA ALA ARG SEQRES 10 A 337 VAL LEU ARG GLN ASP LYS ARG MET ASP GLU LYS MET ALA SEQRES 11 A 337 LYS ARG ASP LEU ARG TRP ALA PRO THR ILE GLY ARG GLU SEQRES 12 A 337 VAL ARG ASP GLN VAL VAL GLY VAL VAL GLY THR GLY HIS SEQRES 13 A 337 ILE GLY GLN VAL PHE MET ARG ILE MET GLU GLY PHE GLY SEQRES 14 A 337 ALA LYS VAL ILE ALA TYR ASP ILE PHE LYS ASN PRO GLU SEQRES 15 A 337 LEU GLU LYS LYS GLY TYR TYR VAL ASP SER LEU ASP ASP SEQRES 16 A 337 LEU TYR LYS GLN ALA ASP VAL ILE SER LEU HIS VAL PRO SEQRES 17 A 337 ASP VAL PRO ALA ASN VAL HIS MET ILE ASN ASP LYS SER SEQRES 18 A 337 ILE ALA GLU MET LYS ASP GLY VAL VAL ILE VAL ASN CYS SEQRES 19 A 337 SER ARG GLY ARG LEU VAL ASP THR ASP ALA VAL ILE ARG SEQRES 20 A 337 GLY LEU ASP SER GLY LYS ILE PHE GLY PHE VAL MET ASP SEQRES 21 A 337 THR TYR GLU ASP GLU VAL GLY VAL PHE ASN LYS ASP TRP SEQRES 22 A 337 GLU GLY LYS GLU PHE PRO ASP LYS ARG LEU ALA ASP LEU SEQRES 23 A 337 ILE ASP ARG PRO ASN VAL LEU VAL THR PRO HIS THR ALA SEQRES 24 A 337 PHE TYR THR THR HIS ALA VAL ARG ASN MET VAL VAL LYS SEQRES 25 A 337 ALA PHE ASN ASN ASN LEU LYS LEU ILE ASN GLY GLU LYS SEQRES 26 A 337 PRO ASP SER PRO VAL ALA LEU ASN LYS ASN LYS PHE SEQRES 1 B 337 MET THR LYS VAL PHE ALA TYR ALA ILE ARG LYS ASP GLU SEQRES 2 B 337 GLU PRO PHE LEU ASN GLU TRP LYS GLU ALA HIS LYS ASP SEQRES 3 B 337 ILE ASP VAL ASP TYR THR ASP LYS LEU LEU THR PRO GLU SEQRES 4 B 337 THR ALA LYS LEU ALA LYS GLY ALA ASP GLY VAL VAL VAL SEQRES 5 B 337 TYR GLN GLN LEU ASP TYR THR ALA ASP THR LEU GLN ALA SEQRES 6 B 337 LEU ALA ASP ALA GLY VAL THR LYS MET SER LEU ARG ASN SEQRES 7 B 337 VAL GLY VAL ASP ASN ILE ASP MET ASP LYS ALA LYS GLU SEQRES 8 B 337 LEU GLY PHE GLN ILE THR ASN VAL PRO VAL TYR SER PRO SEQRES 9 B 337 ASN ALA ILE ALA GLU HIS ALA ALA ILE GLN ALA ALA ARG SEQRES 10 B 337 VAL LEU ARG GLN ASP LYS ARG MET ASP GLU LYS MET ALA SEQRES 11 B 337 LYS ARG ASP LEU ARG TRP ALA PRO THR ILE GLY ARG GLU SEQRES 12 B 337 VAL ARG ASP GLN VAL VAL GLY VAL VAL GLY THR GLY HIS SEQRES 13 B 337 ILE GLY GLN VAL PHE MET ARG ILE MET GLU GLY PHE GLY SEQRES 14 B 337 ALA LYS VAL ILE ALA TYR ASP ILE PHE LYS ASN PRO GLU SEQRES 15 B 337 LEU GLU LYS LYS GLY TYR TYR VAL ASP SER LEU ASP ASP SEQRES 16 B 337 LEU TYR LYS GLN ALA ASP VAL ILE SER LEU HIS VAL PRO SEQRES 17 B 337 ASP VAL PRO ALA ASN VAL HIS MET ILE ASN ASP LYS SER SEQRES 18 B 337 ILE ALA GLU MET LYS ASP GLY VAL VAL ILE VAL ASN CYS SEQRES 19 B 337 SER ARG GLY ARG LEU VAL ASP THR ASP ALA VAL ILE ARG SEQRES 20 B 337 GLY LEU ASP SER GLY LYS ILE PHE GLY PHE VAL MET ASP SEQRES 21 B 337 THR TYR GLU ASP GLU VAL GLY VAL PHE ASN LYS ASP TRP SEQRES 22 B 337 GLU GLY LYS GLU PHE PRO ASP LYS ARG LEU ALA ASP LEU SEQRES 23 B 337 ILE ASP ARG PRO ASN VAL LEU VAL THR PRO HIS THR ALA SEQRES 24 B 337 PHE TYR THR THR HIS ALA VAL ARG ASN MET VAL VAL LYS SEQRES 25 B 337 ALA PHE ASN ASN ASN LEU LYS LEU ILE ASN GLY GLU LYS SEQRES 26 B 337 PRO ASP SER PRO VAL ALA LEU ASN LYS ASN LYS PHE HET NAI A 401 44 HET OXM A 402 6 HET NAI B 401 44 HET OXM B 402 6 HETNAM NAI 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE HETNAM OXM OXAMIC ACID HETSYN NAI NADH FORMUL 3 NAI 2(C21 H29 N7 O14 P2) FORMUL 4 OXM 2(C2 H3 N O3) HELIX 1 1 LYS A 11 ALA A 23 1 13 HELIX 2 2 THR A 40 LEU A 43 5 4 HELIX 3 3 ALA A 60 GLY A 70 1 11 HELIX 4 4 MET A 86 GLU A 91 1 6 HELIX 5 5 ASN A 105 ARG A 120 1 16 HELIX 6 6 ASP A 122 ALA A 130 1 9 HELIX 7 7 VAL A 144 ASP A 146 5 3 HELIX 8 8 HIS A 156 PHE A 168 1 13 HELIX 9 9 LEU A 183 LYS A 186 5 4 HELIX 10 10 LEU A 193 LYS A 198 1 6 HELIX 11 11 ASP A 219 GLU A 224 1 6 HELIX 12 12 GLY A 237 LEU A 239 5 3 HELIX 13 13 THR A 242 SER A 251 1 10 HELIX 14 14 GLU A 265 VAL A 268 1 4 HELIX 15 15 LYS A 281 ASP A 288 1 8 HELIX 16 16 THR A 303 ASN A 322 1 20 HELIX 17 17 LYS B 11 LYS B 21 1 11 HELIX 18 18 PRO B 38 LYS B 42 1 5 HELIX 19 19 THR B 62 GLY B 70 1 9 HELIX 20 20 MET B 86 LEU B 92 1 7 HELIX 21 21 PRO B 104 ARG B 120 5 17 HELIX 22 22 ASP B 122 LYS B 131 1 10 HELIX 23 23 VAL B 144 ASP B 146 5 3 HELIX 24 24 HIS B 156 PHE B 168 1 13 HELIX 25 25 PRO B 181 LYS B 186 1 6 HELIX 26 26 LEU B 193 LYS B 198 1 6 HELIX 27 27 ASP B 219 GLU B 224 1 6 HELIX 28 28 THR B 242 SER B 251 1 10 HELIX 29 29 GLU B 263 GLU B 265 5 3 HELIX 30 30 LYS B 281 ILE B 287 1 7 HELIX 31 31 THR B 303 ASN B 322 1 20 SHEET 1 A 4 ASP A 28 ASP A 30 0 SHEET 2 A 4 LYS A 3 TYR A 7 1 N VAL A 4 O ASP A 28 SHEET 3 A 4 GLY A 49 VAL A 52 1 N GLY A 49 O PHE A 5 SHEET 4 A 4 LYS A 73 SER A 75 1 N LYS A 73 O VAL A 50 SHEET 1 B 6 LYS A 171 TYR A 175 0 SHEET 2 B 6 VAL A 148 VAL A 152 1 N VAL A 149 O LYS A 171 SHEET 3 B 6 VAL A 202 LEU A 205 1 N VAL A 202 O GLY A 150 SHEET 4 B 6 VAL A 229 ASN A 233 1 N VAL A 230 O ILE A 203 SHEET 5 B 6 ILE A 254 MET A 259 1 N PHE A 255 O VAL A 229 SHEET 6 B 6 VAL A 292 VAL A 294 1 N LEU A 293 O PHE A 257 SHEET 1 C 5 ASP B 28 THR B 32 0 SHEET 2 C 5 LYS B 3 TYR B 7 1 N VAL B 4 O ASP B 28 SHEET 3 C 5 GLY B 49 VAL B 52 1 N GLY B 49 O PHE B 5 SHEET 4 C 5 LYS B 73 LEU B 76 1 N SER B 75 O VAL B 50 SHEET 5 C 5 GLN B 95 THR B 97 1 N GLN B 95 O MET B 74 SHEET 1 D 6 LYS B 171 TYR B 175 0 SHEET 2 D 6 VAL B 148 VAL B 152 1 N VAL B 149 O LYS B 171 SHEET 3 D 6 VAL B 202 LEU B 205 1 N VAL B 202 O GLY B 150 SHEET 4 D 6 VAL B 229 ASN B 233 1 N VAL B 230 O ILE B 203 SHEET 5 D 6 ILE B 254 MET B 259 1 N PHE B 255 O VAL B 229 SHEET 6 D 6 VAL B 292 VAL B 294 1 N LEU B 293 O PHE B 257 LINK OD1 ASP A 176 N3A NAI A 401 1555 1555 1.92 LINK C5N NAI B 401 N1 OXM B 402 1555 1555 1.95 CISPEP 1 ALA A 137 PRO A 138 0 -1.54 CISPEP 2 ALA B 137 PRO B 138 0 0.54 SITE 1 AC1 18 THR A 154 GLY A 155 HIS A 156 ILE A 157 SITE 2 AC1 18 ASP A 176 ILE A 177 HIS A 206 VAL A 207 SITE 3 AC1 18 PRO A 208 ASN A 213 CYS A 234 SER A 235 SITE 4 AC1 18 ARG A 236 THR A 261 HIS A 297 ALA A 299 SITE 5 AC1 18 PHE A 337 OXM A 402 SITE 1 AC2 4 SER A 235 ARG A 236 HIS A 297 NAI A 401 SITE 1 AC3 18 THR B 154 GLY B 155 HIS B 156 ILE B 157 SITE 2 AC3 18 ASP B 176 ILE B 177 HIS B 206 VAL B 207 SITE 3 AC3 18 PRO B 208 ASN B 213 CYS B 234 SER B 235 SITE 4 AC3 18 ARG B 236 ASP B 260 THR B 261 HIS B 297 SITE 5 AC3 18 ALA B 299 OXM B 402 SITE 1 AC4 3 ARG B 236 HIS B 297 NAI B 401 CRYST1 86.200 62.100 77.400 90.00 113.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011601 0.000000 0.004972 0.00000 SCALE2 0.000000 0.016103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014057 0.00000