data_2DLH # _entry.id 2DLH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DLH pdb_00002dlh 10.2210/pdb2dlh/pdb RCSB RCSB025554 ? ? WWPDB D_1000025554 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso002001101.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DLH _pdbx_database_status.recvd_initial_deposition_date 2006-04-18 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Seimiya, K.' 1 'Hayashi, F.' 2 'Yoshida, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seimiya, K.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Receptor-type tyrosine-protein phosphatase delta' _entity.formula_weight 12933.229 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 3.1.3.48 _entity.pdbx_mutation ? _entity.pdbx_fragment 'fn3, Fibronectin type-III' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein-tyrosine phosphatase delta, R-PTP-delta' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI GNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTI GNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso002001101.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 VAL n 1 10 LEU n 1 11 THR n 1 12 GLN n 1 13 THR n 1 14 SER n 1 15 GLU n 1 16 GLN n 1 17 ALA n 1 18 PRO n 1 19 SER n 1 20 SER n 1 21 ALA n 1 22 PRO n 1 23 ARG n 1 24 ASP n 1 25 VAL n 1 26 GLN n 1 27 ALA n 1 28 ARG n 1 29 MET n 1 30 LEU n 1 31 SER n 1 32 SER n 1 33 THR n 1 34 THR n 1 35 ILE n 1 36 LEU n 1 37 VAL n 1 38 GLN n 1 39 TRP n 1 40 LYS n 1 41 GLU n 1 42 PRO n 1 43 GLU n 1 44 GLU n 1 45 PRO n 1 46 ASN n 1 47 GLY n 1 48 GLN n 1 49 ILE n 1 50 GLN n 1 51 GLY n 1 52 TYR n 1 53 ARG n 1 54 VAL n 1 55 TYR n 1 56 TYR n 1 57 THR n 1 58 MET n 1 59 ASP n 1 60 PRO n 1 61 THR n 1 62 GLN n 1 63 HIS n 1 64 VAL n 1 65 ASN n 1 66 ASN n 1 67 TRP n 1 68 MET n 1 69 LYS n 1 70 HIS n 1 71 ASN n 1 72 VAL n 1 73 ALA n 1 74 ASP n 1 75 SER n 1 76 GLN n 1 77 ILE n 1 78 THR n 1 79 THR n 1 80 ILE n 1 81 GLY n 1 82 ASN n 1 83 LEU n 1 84 VAL n 1 85 PRO n 1 86 GLN n 1 87 LYS n 1 88 THR n 1 89 TYR n 1 90 SER n 1 91 VAL n 1 92 LYS n 1 93 VAL n 1 94 LEU n 1 95 ALA n 1 96 PHE n 1 97 THR n 1 98 SER n 1 99 ILE n 1 100 GLY n 1 101 ASP n 1 102 GLY n 1 103 PRO n 1 104 LEU n 1 105 SER n 1 106 SER n 1 107 ASP n 1 108 ILE n 1 109 GLN n 1 110 VAL n 1 111 ILE n 1 112 THR n 1 113 GLN n 1 114 THR n 1 115 GLY n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PTPRD _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050302-29 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PTPRD_HUMAN _struct_ref.pdbx_db_accession P23468 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 405 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DLH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P23468 _struct_ref_seq.db_align_beg 405 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 514 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DLH GLY A 1 ? UNP P23468 ? ? 'cloning artifact' 1 1 1 2DLH SER A 2 ? UNP P23468 ? ? 'cloning artifact' 2 2 1 2DLH SER A 3 ? UNP P23468 ? ? 'cloning artifact' 3 3 1 2DLH GLY A 4 ? UNP P23468 ? ? 'cloning artifact' 4 4 1 2DLH SER A 5 ? UNP P23468 ? ? 'cloning artifact' 5 5 1 2DLH SER A 6 ? UNP P23468 ? ? 'cloning artifact' 6 6 1 2DLH GLY A 7 ? UNP P23468 ? ? 'cloning artifact' 7 7 1 2DLH SER A 116 ? UNP P23468 ? ? 'cloning artifact' 116 8 1 2DLH GLY A 117 ? UNP P23468 ? ? 'cloning artifact' 117 9 1 2DLH PRO A 118 ? UNP P23468 ? ? 'cloning artifact' 118 10 1 2DLH SER A 119 ? UNP P23468 ? ? 'cloning artifact' 119 11 1 2DLH SER A 120 ? UNP P23468 ? ? 'cloning artifact' 120 12 1 2DLH GLY A 121 ? UNP P23468 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.33mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 800 ? 2 INOVA Varian 900 ? # _pdbx_nmr_ensemble.entry_id 2DLH _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DLH _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.1 'Guntert, P.' 5 refinement CYANA 2.1 'Guntert, P.' 6 # _exptl.entry_id 2DLH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DLH _struct.title 'Solution structure of the second fn3 domain of human receptor-type tyrosine-protein phosphatase delta' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DLH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Protein-tyrosine phosphatase delta, R-PTP-delta, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, HYDROLASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 23 ? ALA A 27 ? ARG A 23 ALA A 27 A 2 VAL A 37 ? LYS A 40 ? VAL A 37 LYS A 40 A 3 ILE A 77 ? THR A 78 ? ILE A 77 THR A 78 B 1 ILE A 49 ? TYR A 55 ? ILE A 49 TYR A 55 B 2 THR A 88 ? THR A 97 ? THR A 88 THR A 97 B 3 ILE A 108 ? ILE A 111 ? ILE A 108 ILE A 111 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 23 ? N ARG A 23 O LYS A 40 ? O LYS A 40 A 2 3 N VAL A 37 ? N VAL A 37 O THR A 78 ? O THR A 78 B 1 2 N TYR A 55 ? N TYR A 55 O LYS A 92 ? O LYS A 92 B 2 3 N TYR A 89 ? N TYR A 89 O VAL A 110 ? O VAL A 110 # _database_PDB_matrix.entry_id 2DLH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DLH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 PRO 22 22 22 PRO PRO A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 TYR 55 55 55 TYR TYR A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 GLN 62 62 62 GLN GLN A . n A 1 63 HIS 63 63 63 HIS HIS A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASN 66 66 66 ASN ASN A . n A 1 67 TRP 67 67 67 TRP TRP A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 THR 78 78 78 THR THR A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ASN 82 82 82 ASN ASN A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 GLN 86 86 86 GLN GLN A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 TYR 89 89 89 TYR TYR A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 VAL 93 93 93 VAL VAL A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 PHE 96 96 96 PHE PHE A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 PRO 103 103 103 PRO PRO A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 VAL 110 110 110 VAL VAL A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 GLN 113 113 113 GLN GLN A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-18 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -108.64 76.92 2 1 VAL A 9 ? ? 59.26 74.91 3 1 THR A 13 ? ? -157.04 80.33 4 1 THR A 33 ? ? -141.87 32.54 5 1 ASP A 59 ? ? -113.11 75.80 6 1 LYS A 69 ? ? 63.68 159.37 7 2 SER A 2 ? ? 59.96 178.80 8 2 SER A 5 ? ? -154.18 -53.32 9 2 SER A 6 ? ? 56.06 87.91 10 2 GLN A 12 ? ? -143.75 31.25 11 2 THR A 33 ? ? -143.05 33.36 12 2 ASP A 59 ? ? -113.02 76.03 13 2 LYS A 69 ? ? 63.62 159.79 14 2 PRO A 118 ? ? -69.78 92.38 15 2 SER A 120 ? ? 61.39 174.84 16 3 SER A 6 ? ? 54.35 -172.19 17 3 SER A 14 ? ? 59.89 174.29 18 3 THR A 33 ? ? -142.33 32.10 19 3 ASP A 59 ? ? -114.08 75.51 20 3 TRP A 67 ? ? -53.47 173.90 21 3 LYS A 69 ? ? 63.74 162.85 22 3 SER A 120 ? ? 62.56 167.81 23 4 SER A 2 ? ? -161.58 90.13 24 4 SER A 5 ? ? -166.85 89.19 25 4 VAL A 9 ? ? 60.90 99.79 26 4 THR A 13 ? ? -72.79 -70.62 27 4 SER A 14 ? ? 58.89 177.83 28 4 THR A 33 ? ? -144.62 35.96 29 4 ASP A 59 ? ? -112.26 78.03 30 4 TRP A 67 ? ? -54.09 175.60 31 4 LYS A 69 ? ? 66.65 138.65 32 4 SER A 119 ? ? 60.55 91.66 33 5 SER A 2 ? ? -151.17 -50.89 34 5 THR A 13 ? ? -90.47 -70.44 35 5 SER A 31 ? ? -123.48 -167.25 36 5 THR A 33 ? ? -155.39 28.78 37 5 ASP A 59 ? ? -112.63 76.93 38 5 LYS A 69 ? ? 62.96 162.28 39 5 SER A 120 ? ? 62.55 -179.11 40 6 SER A 2 ? ? 61.88 169.69 41 6 SER A 3 ? ? -144.58 -49.36 42 6 SER A 6 ? ? -76.00 -73.46 43 6 VAL A 9 ? ? -154.63 22.41 44 6 LEU A 10 ? ? 58.75 95.56 45 6 GLN A 12 ? ? -57.43 173.10 46 6 SER A 14 ? ? 64.91 113.60 47 6 SER A 31 ? ? -123.89 -167.05 48 6 THR A 33 ? ? -155.21 28.90 49 6 ASP A 59 ? ? -112.81 76.97 50 6 TRP A 67 ? ? -52.47 171.11 51 6 LYS A 69 ? ? 63.65 159.84 52 6 ALA A 73 ? ? -117.15 61.53 53 6 THR A 112 ? ? -69.16 91.71 54 6 THR A 114 ? ? -100.67 43.49 55 6 SER A 116 ? ? 60.09 174.35 56 6 PRO A 118 ? ? -69.65 -176.54 57 6 SER A 119 ? ? 59.99 -176.67 58 7 SER A 2 ? ? -152.63 -70.52 59 7 SER A 14 ? ? 62.60 169.02 60 7 THR A 33 ? ? -144.33 35.17 61 7 ASP A 59 ? ? -113.14 75.76 62 7 TRP A 67 ? ? -52.28 170.92 63 7 LYS A 69 ? ? 62.92 162.09 64 7 GLN A 113 ? ? -143.42 14.45 65 7 THR A 114 ? ? 37.10 43.79 66 7 SER A 116 ? ? 57.62 94.63 67 7 SER A 119 ? ? -104.20 79.52 68 7 SER A 120 ? ? 56.42 -174.16 69 8 SER A 3 ? ? -119.71 75.40 70 8 SER A 5 ? ? 54.19 -171.04 71 8 SER A 6 ? ? -140.08 -63.35 72 8 THR A 13 ? ? 60.37 178.03 73 8 THR A 33 ? ? -143.54 29.10 74 8 ASP A 59 ? ? -112.24 78.17 75 8 TRP A 67 ? ? -58.69 -174.17 76 8 SER A 116 ? ? 60.38 -173.90 77 8 SER A 119 ? ? -172.85 132.77 78 9 SER A 5 ? ? 56.57 91.55 79 9 THR A 11 ? ? -142.99 -63.93 80 9 GLN A 12 ? ? -167.16 109.31 81 9 THR A 33 ? ? -142.82 33.81 82 9 HIS A 63 ? ? -60.71 -84.29 83 9 VAL A 64 ? ? -154.45 -71.35 84 9 TRP A 67 ? ? -61.28 -175.18 85 9 LYS A 69 ? ? 63.78 161.38 86 10 SER A 3 ? ? -172.67 129.99 87 10 THR A 33 ? ? -143.16 33.54 88 10 ASP A 59 ? ? -111.64 79.86 89 10 HIS A 63 ? ? -60.33 -84.04 90 10 VAL A 64 ? ? -154.53 -71.20 91 10 TRP A 67 ? ? -60.55 -175.21 92 10 LYS A 69 ? ? 64.07 158.73 93 11 SER A 3 ? ? -174.65 138.97 94 11 THR A 13 ? ? -144.69 -60.28 95 11 THR A 33 ? ? -144.67 35.56 96 11 HIS A 63 ? ? -61.00 -84.14 97 11 VAL A 64 ? ? -154.18 -71.25 98 11 TRP A 67 ? ? -60.49 -175.16 99 11 LYS A 69 ? ? 64.05 158.56 100 11 LEU A 104 ? ? -55.84 171.47 101 12 SER A 3 ? ? 62.73 -172.99 102 12 SER A 5 ? ? 62.90 101.97 103 12 PRO A 8 ? ? -69.78 97.97 104 12 GLN A 12 ? ? -129.13 -58.93 105 12 ASP A 59 ? ? -113.03 76.28 106 12 TRP A 67 ? ? -54.11 175.21 107 12 LYS A 69 ? ? 66.55 137.82 108 12 ALA A 73 ? ? -118.55 67.18 109 12 SER A 119 ? ? 53.74 80.71 110 13 SER A 3 ? ? 69.17 -75.89 111 13 SER A 5 ? ? 59.62 -172.71 112 13 SER A 6 ? ? -174.96 124.80 113 13 PRO A 8 ? ? -69.83 95.03 114 13 LEU A 10 ? ? -117.70 52.08 115 13 SER A 14 ? ? -170.48 149.77 116 13 THR A 33 ? ? -143.65 31.78 117 13 HIS A 63 ? ? -60.71 -84.16 118 13 VAL A 64 ? ? -154.17 -71.14 119 13 TRP A 67 ? ? -61.18 -175.39 120 13 LYS A 69 ? ? 64.66 156.02 121 13 SER A 116 ? ? 60.72 98.06 122 14 SER A 31 ? ? -129.05 -168.24 123 14 THR A 33 ? ? -154.69 33.14 124 14 GLU A 44 ? ? -166.85 74.18 125 14 ASP A 59 ? ? -112.54 77.46 126 14 TRP A 67 ? ? -54.09 173.64 127 14 LYS A 69 ? ? 64.72 154.42 128 14 ASP A 107 ? ? -52.33 107.35 129 14 GLN A 113 ? ? -151.24 33.94 130 14 PRO A 118 ? ? -69.71 -171.01 131 14 SER A 120 ? ? 57.87 88.33 132 15 SER A 3 ? ? -153.84 -48.44 133 15 SER A 5 ? ? -164.91 -57.00 134 15 SER A 6 ? ? 59.15 -176.97 135 15 LEU A 10 ? ? 62.17 171.62 136 15 SER A 14 ? ? 62.79 164.22 137 15 THR A 33 ? ? -151.00 39.05 138 15 ASP A 59 ? ? -112.78 77.11 139 15 TRP A 67 ? ? -55.64 176.80 140 15 LYS A 69 ? ? 64.19 157.57 141 15 LEU A 83 ? ? -105.07 -169.85 142 15 ASP A 107 ? ? -51.88 106.33 143 15 SER A 116 ? ? -166.83 51.90 144 16 SER A 3 ? ? -57.12 108.49 145 16 THR A 13 ? ? -159.90 -58.12 146 16 SER A 31 ? ? -129.86 -168.20 147 16 THR A 33 ? ? -148.87 37.54 148 16 GLU A 44 ? ? -175.79 72.18 149 16 ASP A 59 ? ? -112.54 77.50 150 16 TRP A 67 ? ? -52.45 170.88 151 16 LYS A 69 ? ? 64.41 156.30 152 16 ASP A 107 ? ? -51.91 109.12 153 16 GLN A 113 ? ? -150.35 30.17 154 16 SER A 116 ? ? -154.84 49.64 155 17 SER A 2 ? ? -115.08 -70.49 156 17 SER A 3 ? ? 59.33 -176.15 157 17 SER A 5 ? ? -175.60 137.42 158 17 SER A 6 ? ? 60.96 -179.30 159 17 PRO A 8 ? ? -69.78 85.06 160 17 THR A 13 ? ? -159.53 -58.49 161 17 SER A 31 ? ? -127.98 -168.32 162 17 THR A 33 ? ? -141.41 22.24 163 17 ASP A 59 ? ? -112.96 76.36 164 17 TRP A 67 ? ? -53.06 171.84 165 17 LYS A 69 ? ? 64.09 158.54 166 18 SER A 2 ? ? 56.26 83.06 167 18 SER A 5 ? ? 56.61 -172.10 168 18 SER A 6 ? ? 57.12 -178.67 169 18 PRO A 8 ? ? -69.69 85.21 170 18 SER A 14 ? ? 62.68 165.41 171 18 SER A 31 ? ? -123.55 -167.24 172 18 THR A 33 ? ? -151.68 29.79 173 18 HIS A 63 ? ? -60.99 -84.35 174 18 VAL A 64 ? ? -154.16 -70.88 175 18 TRP A 67 ? ? -60.76 -175.13 176 18 LYS A 69 ? ? 64.13 158.34 177 18 ASP A 107 ? ? -53.20 107.60 178 18 THR A 112 ? ? -65.13 91.22 179 18 PRO A 118 ? ? -69.81 80.60 180 18 SER A 120 ? ? -156.95 -62.42 181 19 SER A 3 ? ? 60.22 -179.83 182 19 LEU A 10 ? ? 61.66 95.27 183 19 GLN A 12 ? ? 55.49 -172.27 184 19 PRO A 22 ? ? -69.76 -178.20 185 19 SER A 31 ? ? -124.66 -165.18 186 19 THR A 33 ? ? -156.52 29.61 187 19 ASP A 59 ? ? -112.89 76.47 188 19 TRP A 67 ? ? -55.88 178.50 189 19 LYS A 69 ? ? 64.10 156.10 190 19 GLN A 113 ? ? -157.68 81.47 191 20 PRO A 8 ? ? -69.88 -175.32 192 20 LEU A 10 ? ? -178.61 142.83 193 20 GLN A 12 ? ? -176.54 51.69 194 20 THR A 13 ? ? -83.65 -73.59 195 20 SER A 14 ? ? 61.55 167.92 196 20 THR A 33 ? ? -151.94 38.65 197 20 ASP A 59 ? ? -112.55 77.00 198 20 LYS A 69 ? ? 63.72 159.46 #