HEADER HYDROLASE 18-APR-06 2DLH TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN RECEPTOR-TYPE TITLE 2 TYROSINE-PROTEIN PHOSPHATASE DELTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3, FIBRONECTIN TYPE-III; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-29; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS PROTEIN-TYROSINE PHOSPHATASE DELTA, R-PTP-DELTA, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DLH 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DLH 1 VERSN REVDAT 1 18-OCT-06 2DLH 0 JRNL AUTH K.SEIMIYA,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN JRNL TITL 2 RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE DELTA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025554. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.33MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9742, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 76.92 -108.64 REMARK 500 1 VAL A 9 74.91 59.26 REMARK 500 1 THR A 13 80.33 -157.04 REMARK 500 1 THR A 33 32.54 -141.87 REMARK 500 1 ASP A 59 75.80 -113.11 REMARK 500 1 LYS A 69 159.37 63.68 REMARK 500 2 SER A 2 178.80 59.96 REMARK 500 2 SER A 5 -53.32 -154.18 REMARK 500 2 SER A 6 87.91 56.06 REMARK 500 2 GLN A 12 31.25 -143.75 REMARK 500 2 THR A 33 33.36 -143.05 REMARK 500 2 ASP A 59 76.03 -113.02 REMARK 500 2 LYS A 69 159.79 63.62 REMARK 500 2 PRO A 118 92.38 -69.78 REMARK 500 2 SER A 120 174.84 61.39 REMARK 500 3 SER A 6 -172.19 54.35 REMARK 500 3 SER A 14 174.29 59.89 REMARK 500 3 THR A 33 32.10 -142.33 REMARK 500 3 ASP A 59 75.51 -114.08 REMARK 500 3 TRP A 67 173.90 -53.47 REMARK 500 3 LYS A 69 162.85 63.74 REMARK 500 3 SER A 120 167.81 62.56 REMARK 500 4 SER A 2 90.13 -161.58 REMARK 500 4 SER A 5 89.19 -166.85 REMARK 500 4 VAL A 9 99.79 60.90 REMARK 500 4 THR A 13 -70.62 -72.79 REMARK 500 4 SER A 14 177.83 58.89 REMARK 500 4 THR A 33 35.96 -144.62 REMARK 500 4 ASP A 59 78.03 -112.26 REMARK 500 4 TRP A 67 175.60 -54.09 REMARK 500 4 LYS A 69 138.65 66.65 REMARK 500 4 SER A 119 91.66 60.55 REMARK 500 5 SER A 2 -50.89 -151.17 REMARK 500 5 THR A 13 -70.44 -90.47 REMARK 500 5 SER A 31 -167.25 -123.48 REMARK 500 5 THR A 33 28.78 -155.39 REMARK 500 5 ASP A 59 76.93 -112.63 REMARK 500 5 LYS A 69 162.28 62.96 REMARK 500 5 SER A 120 -179.11 62.55 REMARK 500 6 SER A 2 169.69 61.88 REMARK 500 6 SER A 3 -49.36 -144.58 REMARK 500 6 SER A 6 -73.46 -76.00 REMARK 500 6 VAL A 9 22.41 -154.63 REMARK 500 6 LEU A 10 95.56 58.75 REMARK 500 6 GLN A 12 173.10 -57.43 REMARK 500 6 SER A 14 113.60 64.91 REMARK 500 6 SER A 31 -167.05 -123.89 REMARK 500 6 THR A 33 28.90 -155.21 REMARK 500 6 ASP A 59 76.97 -112.81 REMARK 500 6 TRP A 67 171.11 -52.47 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002001101.2 RELATED DB: TARGETDB DBREF 2DLH A 8 115 UNP P23468 PTPRD_HUMAN 405 514 SEQADV 2DLH GLY A 1 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 2 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 3 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 4 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 5 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 6 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 7 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 116 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 117 UNP P23468 CLONING ARTIFACT SEQADV 2DLH PRO A 118 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 119 UNP P23468 CLONING ARTIFACT SEQADV 2DLH SER A 120 UNP P23468 CLONING ARTIFACT SEQADV 2DLH GLY A 121 UNP P23468 CLONING ARTIFACT SEQRES 1 A 121 GLY SER SER GLY SER SER GLY PRO VAL LEU THR GLN THR SEQRES 2 A 121 SER GLU GLN ALA PRO SER SER ALA PRO ARG ASP VAL GLN SEQRES 3 A 121 ALA ARG MET LEU SER SER THR THR ILE LEU VAL GLN TRP SEQRES 4 A 121 LYS GLU PRO GLU GLU PRO ASN GLY GLN ILE GLN GLY TYR SEQRES 5 A 121 ARG VAL TYR TYR THR MET ASP PRO THR GLN HIS VAL ASN SEQRES 6 A 121 ASN TRP MET LYS HIS ASN VAL ALA ASP SER GLN ILE THR SEQRES 7 A 121 THR ILE GLY ASN LEU VAL PRO GLN LYS THR TYR SER VAL SEQRES 8 A 121 LYS VAL LEU ALA PHE THR SER ILE GLY ASP GLY PRO LEU SEQRES 9 A 121 SER SER ASP ILE GLN VAL ILE THR GLN THR GLY SER GLY SEQRES 10 A 121 PRO SER SER GLY SHEET 1 A 3 ARG A 23 ALA A 27 0 SHEET 2 A 3 VAL A 37 LYS A 40 -1 O LYS A 40 N ARG A 23 SHEET 3 A 3 ILE A 77 THR A 78 -1 O THR A 78 N VAL A 37 SHEET 1 B 3 ILE A 49 TYR A 55 0 SHEET 2 B 3 THR A 88 THR A 97 -1 O LYS A 92 N TYR A 55 SHEET 3 B 3 ILE A 108 ILE A 111 -1 O VAL A 110 N TYR A 89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1