HEADER SIGNALING PROTEIN 20-APR-06 2DLS TITLE SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN RHO GUANINE NUCLEOTIDE TITLE 2 EXCHANGE FACTOR 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: PDZ-RHOGEF; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF11, KIAA0380; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050919-12; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 11, PDZ-RHOGEF, KEYWDS 2 ARHGEF11, KIAA0380, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.SUETAKE,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DLS 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DLS 1 VERSN REVDAT 1 20-OCT-06 2DLS 0 JRNL AUTH K.INOUE,T.SUETAKE,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PDZ DOMAIN OF HUMAN RHO GUANINE JRNL TITL 2 NUCLEOTIDE EXCHANGE FACTOR 11 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025563. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 109.95 -40.90 REMARK 500 1 GLN A 18 61.26 -112.37 REMARK 500 1 SER A 26 129.54 -171.00 REMARK 500 1 ASP A 28 -70.90 -73.89 REMARK 500 1 VAL A 33 109.34 -58.67 REMARK 500 1 SER A 64 158.30 -39.08 REMARK 500 2 SER A 2 42.48 37.62 REMARK 500 2 PHE A 21 151.28 -35.97 REMARK 500 2 SER A 26 141.31 -172.42 REMARK 500 2 SER A 86 155.16 -43.97 REMARK 500 2 SER A 88 123.69 -36.05 REMARK 500 2 PRO A 90 95.30 -69.79 REMARK 500 3 LYS A 16 148.59 -35.46 REMARK 500 3 ARG A 37 142.05 -36.72 REMARK 500 3 PRO A 38 89.50 -69.76 REMARK 500 3 ASN A 63 65.53 -118.64 REMARK 500 4 GLN A 18 -31.53 -38.45 REMARK 500 4 VAL A 33 106.54 -46.41 REMARK 500 4 ARG A 37 140.64 -38.65 REMARK 500 4 SER A 75 92.44 -50.31 REMARK 500 5 SER A 3 134.53 -171.11 REMARK 500 5 ASP A 17 -40.60 -131.49 REMARK 500 5 GLN A 18 65.08 -118.27 REMARK 500 5 ASP A 28 -70.17 -63.83 REMARK 500 5 PRO A 38 82.19 -69.75 REMARK 500 5 SER A 64 159.52 -42.65 REMARK 500 5 LYS A 74 58.56 -95.66 REMARK 500 5 SER A 91 160.42 -47.26 REMARK 500 6 GLN A 18 -67.23 -134.99 REMARK 500 6 ASP A 28 -74.84 -79.28 REMARK 500 6 PRO A 38 99.29 -69.77 REMARK 500 6 ALA A 41 -50.67 -124.33 REMARK 500 6 ASN A 63 33.51 71.05 REMARK 500 7 GLN A 18 42.79 -109.35 REMARK 500 7 ARG A 29 -68.36 -106.48 REMARK 500 7 ARG A 37 139.84 -34.96 REMARK 500 7 PRO A 38 88.47 -69.78 REMARK 500 7 VAL A 61 34.00 -97.41 REMARK 500 7 SER A 64 150.78 -43.90 REMARK 500 8 LYS A 16 137.22 -38.91 REMARK 500 8 ASP A 17 -70.76 -107.57 REMARK 500 8 THR A 62 -36.22 -132.03 REMARK 500 8 LYS A 74 53.22 -95.49 REMARK 500 9 SER A 3 -61.93 -99.26 REMARK 500 9 SER A 5 131.81 -38.11 REMARK 500 9 SER A 26 144.17 -173.68 REMARK 500 9 PRO A 90 91.28 -69.75 REMARK 500 10 GLN A 18 47.51 -98.76 REMARK 500 10 PRO A 38 94.37 -69.81 REMARK 500 10 VAL A 61 39.24 -92.52 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002000370.1 RELATED DB: TARGETDB DBREF 2DLS A 8 87 UNP O15085 ARHGB_HUMAN 44 123 SEQADV 2DLS GLY A 1 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 2 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 3 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 4 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 5 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 6 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 7 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 88 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 89 UNP O15085 CLONING ARTIFACT SEQADV 2DLS PRO A 90 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 91 UNP O15085 CLONING ARTIFACT SEQADV 2DLS SER A 92 UNP O15085 CLONING ARTIFACT SEQADV 2DLS GLY A 93 UNP O15085 CLONING ARTIFACT SEQRES 1 A 93 GLY SER SER GLY SER SER GLY VAL GLN ARG CYS VAL ILE SEQRES 2 A 93 ILE GLN LYS ASP GLN HIS GLY PHE GLY PHE THR VAL SER SEQRES 3 A 93 GLY ASP ARG ILE VAL LEU VAL GLN SER VAL ARG PRO GLY SEQRES 4 A 93 GLY ALA ALA MET LYS ALA GLY VAL LYS GLU GLY ASP ARG SEQRES 5 A 93 ILE ILE LYS VAL ASN GLY THR MET VAL THR ASN SER SER SEQRES 6 A 93 HIS LEU GLU VAL VAL LYS LEU ILE LYS SER GLY ALA TYR SEQRES 7 A 93 VAL ALA LEU THR LEU LEU GLY SER SER SER GLY PRO SER SEQRES 8 A 93 SER GLY HELIX 1 1 ALA A 42 ALA A 45 1 4 HELIX 2 2 SER A 65 LYS A 74 1 10 SHEET 1 A 4 GLN A 9 GLN A 15 0 SHEET 2 A 4 TYR A 78 LEU A 84 -1 O LEU A 81 N VAL A 12 SHEET 3 A 4 ARG A 52 VAL A 56 -1 N ILE A 54 O THR A 82 SHEET 4 A 4 THR A 59 MET A 60 -1 O THR A 59 N VAL A 56 SHEET 1 B 2 PHE A 23 SER A 26 0 SHEET 2 B 2 LEU A 32 VAL A 36 -1 O GLN A 34 N THR A 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1