HEADER SIGNALING PROTEIN 20-APR-06 2DLW TITLE SOLUTION STRUCTURE OF THE IRS DOMAIN OF HUMAN DOCKING PROTEIN 2, TITLE 2 ISOFORM A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOCKING PROTEIN 2, ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IRS DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DOK2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050620-10; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS IRS DOMAIN, DOCKING PROTEIN 2, ISOFORM A, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 4 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DLW 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DLW 1 VERSN REVDAT 1 20-OCT-06 2DLW 0 JRNL AUTH H.P.ZHANG,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE IRS DOMAIN OF HUMAN DOCKING JRNL TITL 2 PROTEIN 2, ISOFORM A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTENT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DLW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025567. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.91MM 13C, 15N-LABELED PROTEIN; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02%NAN3, 90% REMARK 210 H2O; 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.04, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 59 101.96 -51.99 REMARK 500 1 LYS A 66 -31.50 -37.06 REMARK 500 1 GLN A 105 -34.24 -34.57 REMARK 500 2 PRO A 17 95.14 -69.67 REMARK 500 2 ARG A 57 -38.71 -34.43 REMARK 500 2 LEU A 59 102.17 -52.03 REMARK 500 2 LYS A 106 104.44 -59.53 REMARK 500 2 PRO A 110 0.35 -69.69 REMARK 500 3 ARG A 57 -35.98 -35.05 REMARK 500 3 LEU A 59 109.70 -52.19 REMARK 500 5 SER A 21 -38.76 -35.61 REMARK 500 5 PRO A 45 -176.41 -69.76 REMARK 500 5 ASP A 53 106.45 -51.94 REMARK 500 5 LEU A 59 104.23 -52.15 REMARK 500 5 ASP A 65 -65.63 -97.95 REMARK 500 6 PRO A 45 -177.80 -69.70 REMARK 500 6 ASP A 53 106.00 -51.95 REMARK 500 6 ARG A 57 -36.58 -39.77 REMARK 500 6 LYS A 66 -26.11 -38.74 REMARK 500 7 ASP A 53 108.88 -52.01 REMARK 500 7 PRO A 110 86.65 -69.78 REMARK 500 8 PRO A 45 -177.90 -69.77 REMARK 500 8 ASP A 53 108.92 -52.00 REMARK 500 8 LYS A 66 -25.51 -39.27 REMARK 500 8 PRO A 110 2.37 -69.73 REMARK 500 9 ALA A 20 -66.72 -94.79 REMARK 500 9 SER A 21 -31.38 -37.21 REMARK 500 9 LEU A 59 104.79 -51.96 REMARK 500 9 GLU A 81 177.78 -59.60 REMARK 500 9 PRO A 110 2.21 -69.80 REMARK 500 10 LYS A 9 107.09 -53.16 REMARK 500 10 GLU A 19 -39.75 -34.25 REMARK 500 10 SER A 21 -32.17 -36.38 REMARK 500 10 PRO A 45 0.92 -69.79 REMARK 500 10 ARG A 57 -35.71 -36.99 REMARK 500 10 LEU A 59 105.77 -52.04 REMARK 500 11 ASN A 107 172.88 -56.61 REMARK 500 12 ARG A 57 -39.07 -34.55 REMARK 500 12 ASP A 65 -67.57 -98.01 REMARK 500 12 SER A 79 -37.62 -33.29 REMARK 500 13 MET A 15 107.67 -58.10 REMARK 500 13 PRO A 17 96.13 -69.79 REMARK 500 13 ASP A 53 109.21 -52.00 REMARK 500 13 ARG A 57 -32.91 -34.52 REMARK 500 13 LEU A 59 102.13 -52.11 REMARK 500 14 PRO A 17 99.55 -69.79 REMARK 500 14 ARG A 57 -34.97 -38.38 REMARK 500 15 ASP A 53 107.49 -52.01 REMARK 500 15 LEU A 59 108.08 -53.14 REMARK 500 15 PRO A 110 85.57 -69.73 REMARK 500 REMARK 500 THIS ENTRY HAS 66 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO002002623.2 RELATED DB: TARGETDB DBREF 2DLW A 8 107 UNP Q8N5A4 Q8N5A4_HUMAN 148 247 SEQADV 2DLW GLY A 1 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 2 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 3 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW GLY A 4 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 5 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 6 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW GLY A 7 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 108 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW GLY A 109 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW PRO A 110 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 111 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW SER A 112 UNP Q8N5A4 CLONING ARTIFACT SEQADV 2DLW GLY A 113 UNP Q8N5A4 CLONING ARTIFACT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY HIS LYS GLU PHE ALA VAL SEQRES 2 A 113 THR MET ARG PRO THR GLU ALA SER GLU ARG CYS HIS LEU SEQRES 3 A 113 ARG GLY SER TYR THR LEU ARG ALA GLY GLU SER ALA LEU SEQRES 4 A 113 GLU LEU TRP GLY GLY PRO GLU PRO GLY THR GLN LEU TYR SEQRES 5 A 113 ASP TRP PRO TYR ARG PHE LEU ARG ARG PHE GLY ARG ASP SEQRES 6 A 113 LYS VAL THR PHE SER PHE GLU ALA GLY ARG ARG CYS VAL SEQRES 7 A 113 SER GLY GLU GLY ASN PHE GLU PHE GLU THR ARG GLN GLY SEQRES 8 A 113 ASN GLU ILE PHE LEU ALA LEU GLU GLU ALA ILE SER ALA SEQRES 9 A 113 GLN LYS ASN SER GLY PRO SER SER GLY HELIX 1 1 GLU A 19 CYS A 24 1 6 HELIX 2 3 GLY A 91 ASN A 107 1 17 SHEET 1 A 3 PHE A 11 THR A 14 0 SHEET 2 A 3 SER A 29 ALA A 34 -1 O LEU A 32 N PHE A 11 SHEET 3 A 3 LEU A 39 GLU A 40 -1 O GLU A 40 N ARG A 33 SHEET 1 B 3 PHE A 62 ASP A 65 0 SHEET 2 B 3 THR A 68 ALA A 73 -1 O SER A 70 N GLY A 63 SHEET 3 B 3 GLY A 82 PHE A 86 -1 O PHE A 86 N PHE A 69 CISPEP 1 GLU A 46 PRO A 47 1 -0.01 CISPEP 2 GLU A 46 PRO A 47 2 -0.05 CISPEP 3 GLU A 46 PRO A 47 3 0.02 CISPEP 4 GLU A 46 PRO A 47 4 0.01 CISPEP 5 GLU A 46 PRO A 47 5 -0.03 CISPEP 6 GLU A 46 PRO A 47 6 0.05 CISPEP 7 GLU A 46 PRO A 47 7 0.05 CISPEP 8 GLU A 46 PRO A 47 8 -0.05 CISPEP 9 GLU A 46 PRO A 47 9 0.05 CISPEP 10 GLU A 46 PRO A 47 10 0.01 CISPEP 11 GLU A 46 PRO A 47 11 -0.07 CISPEP 12 GLU A 46 PRO A 47 12 -0.01 CISPEP 13 GLU A 46 PRO A 47 13 -0.05 CISPEP 14 GLU A 46 PRO A 47 14 0.03 CISPEP 15 GLU A 46 PRO A 47 15 0.03 CISPEP 16 GLU A 46 PRO A 47 16 0.06 CISPEP 17 GLU A 46 PRO A 47 17 0.01 CISPEP 18 GLU A 46 PRO A 47 18 0.06 CISPEP 19 GLU A 46 PRO A 47 19 0.01 CISPEP 20 GLU A 46 PRO A 47 20 0.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1