data_2DLY # _entry.id 2DLY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DLY pdb_00002dly 10.2210/pdb2dly/pdb RCSB RCSB025569 ? ? WWPDB D_1000025569 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000775.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DLY _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Endo, H.' 1 'Hayashi, F.' 2 'Yoshida, M.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the SH2 domain of murine Fyn-related kinase' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Endo, H.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yoshida, M.' 3 ? primary 'Yokoyama, S.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Fyn-related kinase' _entity.formula_weight 13454.015 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'SH2 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLT RRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKIQVSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKGDFSLSVLDEGVVKHYRIRRLDEGGFFLT RRKVFSTLNEFVNYYTTTSDGLCVKLEKPCLKIQVSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier mmt008000775.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 GLU n 1 10 ASP n 1 11 ARG n 1 12 SER n 1 13 LEU n 1 14 GLN n 1 15 ALA n 1 16 GLU n 1 17 PRO n 1 18 TRP n 1 19 PHE n 1 20 PHE n 1 21 GLY n 1 22 ALA n 1 23 ILE n 1 24 LYS n 1 25 ARG n 1 26 ALA n 1 27 ASP n 1 28 ALA n 1 29 GLU n 1 30 LYS n 1 31 GLN n 1 32 LEU n 1 33 LEU n 1 34 TYR n 1 35 SER n 1 36 GLU n 1 37 ASN n 1 38 GLN n 1 39 THR n 1 40 GLY n 1 41 ALA n 1 42 PHE n 1 43 LEU n 1 44 ILE n 1 45 ARG n 1 46 GLU n 1 47 SER n 1 48 GLU n 1 49 SER n 1 50 GLN n 1 51 LYS n 1 52 GLY n 1 53 ASP n 1 54 PHE n 1 55 SER n 1 56 LEU n 1 57 SER n 1 58 VAL n 1 59 LEU n 1 60 ASP n 1 61 GLU n 1 62 GLY n 1 63 VAL n 1 64 VAL n 1 65 LYS n 1 66 HIS n 1 67 TYR n 1 68 ARG n 1 69 ILE n 1 70 ARG n 1 71 ARG n 1 72 LEU n 1 73 ASP n 1 74 GLU n 1 75 GLY n 1 76 GLY n 1 77 PHE n 1 78 PHE n 1 79 LEU n 1 80 THR n 1 81 ARG n 1 82 ARG n 1 83 LYS n 1 84 VAL n 1 85 PHE n 1 86 SER n 1 87 THR n 1 88 LEU n 1 89 ASN n 1 90 GLU n 1 91 PHE n 1 92 VAL n 1 93 ASN n 1 94 TYR n 1 95 TYR n 1 96 THR n 1 97 THR n 1 98 THR n 1 99 SER n 1 100 ASP n 1 101 GLY n 1 102 LEU n 1 103 CYS n 1 104 VAL n 1 105 LYS n 1 106 LEU n 1 107 GLU n 1 108 LYS n 1 109 PRO n 1 110 CYS n 1 111 LEU n 1 112 LYS n 1 113 ILE n 1 114 GLN n 1 115 VAL n 1 116 SER n 1 117 GLY n 1 118 PRO n 1 119 SER n 1 120 SER n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Frk _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050425-02 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8BPC1_MOUSE _struct_ref.pdbx_db_accession Q8BPC1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 113 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DLY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 115 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8BPC1 _struct_ref_seq.db_align_beg 113 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 220 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 115 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DLY GLY A 1 ? UNP Q8BPC1 ? ? 'cloning artifact' 1 1 1 2DLY SER A 2 ? UNP Q8BPC1 ? ? 'cloning artifact' 2 2 1 2DLY SER A 3 ? UNP Q8BPC1 ? ? 'cloning artifact' 3 3 1 2DLY GLY A 4 ? UNP Q8BPC1 ? ? 'cloning artifact' 4 4 1 2DLY SER A 5 ? UNP Q8BPC1 ? ? 'cloning artifact' 5 5 1 2DLY SER A 6 ? UNP Q8BPC1 ? ? 'cloning artifact' 6 6 1 2DLY GLY A 7 ? UNP Q8BPC1 ? ? 'cloning artifact' 7 7 1 2DLY SER A 116 ? UNP Q8BPC1 ? ? 'cloning artifact' 116 8 1 2DLY GLY A 117 ? UNP Q8BPC1 ? ? 'cloning artifact' 117 9 1 2DLY PRO A 118 ? UNP Q8BPC1 ? ? 'cloning artifact' 118 10 1 2DLY SER A 119 ? UNP Q8BPC1 ? ? 'cloning artifact' 119 11 1 2DLY SER A 120 ? UNP Q8BPC1 ? ? 'cloning artifact' 120 12 1 2DLY GLY A 121 ? UNP Q8BPC1 ? ? 'cloning artifact' 121 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.24mM 13C,15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DLY _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DLY _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DLY _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 Delaglio,F. 2 'data analysis' NMRView 5.0.4 Johnson,B.A. 3 'data analysis' KUJIRA 0.955 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 2DLY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DLY _struct.title 'Solution structure of the SH2 domain of murine Fyn-related kinase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DLY _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;Brk family kinase, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 10 ? GLU A 16 ? ASP A 10 GLU A 16 5 ? 7 HELX_P HELX_P2 2 LYS A 24 ? LEU A 33 ? LYS A 24 LEU A 33 1 ? 10 HELX_P HELX_P3 3 THR A 87 ? THR A 96 ? THR A 87 THR A 96 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 42 ? GLU A 46 ? PHE A 42 GLU A 46 A 2 PHE A 54 ? LEU A 59 ? PHE A 54 LEU A 59 A 3 VAL A 64 ? ARG A 71 ? VAL A 64 ARG A 71 A 4 PHE A 77 ? THR A 80 ? PHE A 77 THR A 80 A 5 LYS A 83 ? PHE A 85 ? LYS A 83 PHE A 85 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 43 ? N LEU A 43 O SER A 57 ? O SER A 57 A 2 3 N VAL A 58 ? N VAL A 58 O LYS A 65 ? O LYS A 65 A 3 4 N ARG A 70 ? N ARG A 70 O PHE A 78 ? O PHE A 78 A 4 5 N PHE A 77 ? N PHE A 77 O PHE A 85 ? O PHE A 85 # _database_PDB_matrix.entry_id 2DLY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DLY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 PRO 17 17 17 PRO PRO A . n A 1 18 TRP 18 18 18 TRP TRP A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 PHE 20 20 20 PHE PHE A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ILE 44 44 44 ILE ILE A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ASP 73 73 73 ASP ASP A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 PHE 78 78 78 PHE PHE A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 TYR 95 95 95 TYR TYR A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 THR 97 97 97 THR THR A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 CYS 103 103 103 CYS CYS A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 CYS 110 110 110 CYS CYS A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 GLN 114 114 114 GLN GLN A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 30 ? ? -38.21 -33.88 2 1 TYR A 34 ? ? -44.21 166.72 3 1 GLU A 36 ? ? -34.69 -38.81 4 1 THR A 39 ? ? -39.60 113.46 5 1 SER A 47 ? ? -36.32 139.42 6 1 GLU A 61 ? ? 74.30 40.64 7 1 ARG A 81 ? ? -34.40 -39.46 8 1 TYR A 94 ? ? -82.85 -70.92 9 1 THR A 96 ? ? -33.98 -34.80 10 1 SER A 99 ? ? -101.60 44.90 11 1 ASP A 100 ? ? -42.10 95.94 12 1 PRO A 118 ? ? -69.74 -174.73 13 2 TYR A 34 ? ? -40.63 158.12 14 2 GLU A 36 ? ? -38.86 -33.01 15 2 THR A 39 ? ? -36.45 116.40 16 2 TYR A 94 ? ? -95.02 -66.91 17 2 SER A 99 ? ? -98.40 44.52 18 2 ASP A 100 ? ? -40.11 99.44 19 2 LEU A 106 ? ? -56.59 107.17 20 2 GLU A 107 ? ? -82.33 -71.14 21 3 ARG A 11 ? ? -122.54 -54.76 22 3 TYR A 34 ? ? -36.07 151.80 23 3 GLU A 36 ? ? -39.74 -28.78 24 3 THR A 39 ? ? -35.01 111.40 25 3 SER A 47 ? ? -34.96 136.21 26 3 GLU A 61 ? ? 71.44 35.57 27 3 PHE A 78 ? ? -173.25 129.27 28 3 ARG A 81 ? ? -36.94 -38.46 29 3 TYR A 94 ? ? -90.61 -66.97 30 3 SER A 99 ? ? -89.84 36.78 31 3 ASP A 100 ? ? -35.69 95.06 32 3 GLU A 107 ? ? -94.19 -65.28 33 3 GLN A 114 ? ? -65.28 88.43 34 4 TYR A 34 ? ? -39.77 144.48 35 4 GLU A 36 ? ? -35.80 -38.23 36 4 THR A 39 ? ? -37.25 115.14 37 4 SER A 47 ? ? -43.07 157.76 38 4 GLN A 50 ? ? -173.29 147.36 39 4 GLU A 61 ? ? 73.51 31.54 40 4 TYR A 94 ? ? -93.72 -68.83 41 4 THR A 96 ? ? -37.42 -33.70 42 4 VAL A 115 ? ? -37.96 142.00 43 4 SER A 119 ? ? -34.49 143.39 44 5 SER A 6 ? ? 35.27 40.93 45 5 ARG A 11 ? ? -128.18 -54.24 46 5 LYS A 30 ? ? -37.12 -37.47 47 5 TYR A 34 ? ? -38.59 154.22 48 5 THR A 39 ? ? -36.27 116.38 49 5 LYS A 51 ? ? -46.95 172.79 50 5 GLU A 107 ? ? -93.22 -71.04 51 6 TYR A 34 ? ? -36.87 153.36 52 6 GLU A 61 ? ? 71.05 50.25 53 6 TYR A 94 ? ? -93.29 -63.17 54 6 ASP A 100 ? ? -34.15 102.25 55 6 PRO A 118 ? ? -69.78 96.65 56 7 ARG A 11 ? ? -126.76 -61.40 57 7 LYS A 30 ? ? -38.94 -39.55 58 7 TYR A 34 ? ? -36.27 152.95 59 7 SER A 47 ? ? -54.73 102.28 60 7 GLU A 61 ? ? 71.14 42.27 61 7 TYR A 94 ? ? -94.52 -69.19 62 7 ASP A 100 ? ? -37.12 93.53 63 7 GLU A 107 ? ? -93.56 -62.72 64 7 CYS A 110 ? ? -49.11 170.72 65 8 ARG A 11 ? ? -126.69 -62.77 66 8 TYR A 34 ? ? -41.06 159.20 67 8 THR A 39 ? ? -38.95 115.39 68 8 GLU A 61 ? ? 72.46 40.33 69 8 LEU A 102 ? ? -37.66 133.20 70 8 CYS A 103 ? ? -34.19 -39.98 71 8 GLU A 107 ? ? -109.92 -67.51 72 8 PRO A 118 ? ? -69.74 2.76 73 8 SER A 119 ? ? -35.12 118.94 74 9 ALA A 8 ? ? -172.05 135.72 75 9 ARG A 11 ? ? -121.44 -61.89 76 9 TYR A 34 ? ? -35.05 152.25 77 9 SER A 35 ? ? -65.46 -71.39 78 9 GLU A 36 ? ? -34.16 -38.84 79 9 THR A 39 ? ? -37.68 116.27 80 9 GLU A 48 ? ? -34.83 -36.03 81 9 ASP A 100 ? ? -49.61 96.62 82 9 GLU A 107 ? ? -96.72 -68.65 83 9 GLN A 114 ? ? -106.61 48.66 84 9 VAL A 115 ? ? 33.76 45.18 85 9 PRO A 118 ? ? -69.78 1.95 86 9 SER A 119 ? ? -36.09 126.45 87 10 SER A 5 ? ? 36.13 41.37 88 10 ALA A 8 ? ? -35.15 131.38 89 10 ARG A 11 ? ? -132.54 -53.56 90 10 TYR A 34 ? ? -41.33 158.15 91 10 THR A 39 ? ? -35.98 117.36 92 10 LEU A 43 ? ? -171.02 126.83 93 10 SER A 49 ? ? -46.95 -70.44 94 10 CYS A 103 ? ? -33.89 -39.09 95 10 GLU A 107 ? ? -85.13 -70.79 96 10 PRO A 118 ? ? -69.73 88.04 97 11 ASP A 10 ? ? -91.18 37.91 98 11 ARG A 11 ? ? -44.72 -71.20 99 11 TYR A 34 ? ? -43.94 168.61 100 11 GLU A 36 ? ? -38.81 -26.20 101 11 SER A 49 ? ? -90.52 32.73 102 11 ASP A 100 ? ? 70.45 48.32 103 12 SER A 2 ? ? 38.66 42.87 104 12 GLU A 9 ? ? -85.78 47.26 105 12 TYR A 34 ? ? -35.31 148.54 106 12 GLU A 36 ? ? -39.33 -33.91 107 12 THR A 39 ? ? -36.88 111.73 108 12 GLU A 48 ? ? -45.00 169.94 109 12 ASP A 100 ? ? -39.38 96.26 110 12 CYS A 110 ? ? -49.71 157.00 111 13 ALA A 8 ? ? -174.90 141.65 112 13 ARG A 11 ? ? -120.11 -58.43 113 13 TYR A 34 ? ? -44.66 169.76 114 13 THR A 39 ? ? -34.16 116.89 115 13 SER A 47 ? ? -45.50 97.28 116 13 SER A 49 ? ? -38.00 -71.04 117 13 ASP A 73 ? ? -38.21 -36.85 118 13 ARG A 81 ? ? -74.79 47.00 119 13 ARG A 82 ? ? -134.99 -30.84 120 13 LEU A 88 ? ? -39.70 -25.34 121 13 CYS A 103 ? ? -35.32 -39.48 122 13 LYS A 112 ? ? -118.90 78.23 123 14 ARG A 11 ? ? -134.38 -68.67 124 14 TYR A 34 ? ? -36.51 154.58 125 14 THR A 39 ? ? -35.29 116.87 126 14 GLN A 50 ? ? -174.36 142.33 127 14 TYR A 94 ? ? -91.94 -64.92 128 14 ASP A 100 ? ? -41.60 97.29 129 14 GLU A 107 ? ? -94.20 -68.20 130 14 GLN A 114 ? ? -101.32 41.96 131 15 ALA A 8 ? ? -45.51 169.22 132 15 ASP A 10 ? ? 31.86 39.14 133 15 LYS A 30 ? ? -39.80 -29.79 134 15 TYR A 34 ? ? -45.13 170.15 135 15 THR A 39 ? ? -54.32 106.94 136 15 GLU A 61 ? ? 70.75 42.63 137 15 SER A 99 ? ? -106.79 59.27 138 15 ASP A 100 ? ? -49.96 87.80 139 15 GLU A 107 ? ? -101.14 -66.03 140 15 GLN A 114 ? ? -60.75 87.00 141 15 VAL A 115 ? ? -39.00 133.65 142 15 PRO A 118 ? ? -69.77 88.30 143 16 SER A 3 ? ? -38.83 132.40 144 16 GLU A 9 ? ? -108.09 45.08 145 16 ASP A 10 ? ? 33.47 51.63 146 16 LYS A 30 ? ? -38.34 -33.64 147 16 THR A 39 ? ? -39.41 115.16 148 16 GLU A 61 ? ? 75.06 54.72 149 16 THR A 96 ? ? -49.04 -18.38 150 16 SER A 99 ? ? -92.19 42.21 151 16 ASP A 100 ? ? -36.83 98.79 152 16 CYS A 110 ? ? -34.73 150.52 153 16 ILE A 113 ? ? -34.22 142.31 154 16 SER A 120 ? ? -104.13 42.30 155 17 SER A 3 ? ? -132.30 -61.29 156 17 ALA A 8 ? ? -171.04 119.11 157 17 ARG A 11 ? ? -124.76 -67.80 158 17 LYS A 30 ? ? -39.77 -32.60 159 17 TYR A 34 ? ? -45.18 158.24 160 17 GLU A 36 ? ? -35.75 -38.88 161 17 THR A 39 ? ? -39.81 114.39 162 17 SER A 47 ? ? -54.25 103.36 163 17 GLU A 61 ? ? 73.92 49.52 164 17 ARG A 81 ? ? -80.06 37.91 165 17 TYR A 94 ? ? -96.26 -69.08 166 17 THR A 96 ? ? -37.85 -30.64 167 17 SER A 99 ? ? -98.43 33.60 168 17 ASP A 100 ? ? -40.60 101.48 169 17 CYS A 110 ? ? -37.65 147.98 170 17 PRO A 118 ? ? -69.79 2.15 171 18 GLU A 9 ? ? 36.23 45.47 172 18 ARG A 11 ? ? -132.07 -46.06 173 18 PHE A 20 ? ? -119.42 50.08 174 18 TYR A 34 ? ? -41.02 156.74 175 18 THR A 39 ? ? -39.35 117.74 176 18 GLU A 61 ? ? 72.92 36.63 177 18 ARG A 81 ? ? -59.13 -9.47 178 18 LYS A 83 ? ? -177.17 110.89 179 18 SER A 99 ? ? -106.30 45.59 180 18 ASP A 100 ? ? -38.19 92.69 181 18 GLU A 107 ? ? -93.53 -72.43 182 18 GLN A 114 ? ? -50.42 97.18 183 18 PRO A 118 ? ? -69.67 98.02 184 19 SER A 5 ? ? -124.42 -61.64 185 19 ARG A 11 ? ? -122.98 -50.38 186 19 TYR A 34 ? ? -35.48 145.55 187 19 THR A 39 ? ? -45.79 108.97 188 19 SER A 47 ? ? -66.99 86.71 189 19 GLU A 61 ? ? 70.09 48.37 190 19 ASP A 100 ? ? -34.99 93.53 191 20 SER A 6 ? ? -166.73 117.20 192 20 ASP A 10 ? ? 33.64 37.92 193 20 TYR A 34 ? ? -35.85 146.76 194 20 GLU A 36 ? ? -39.78 -28.14 195 20 THR A 39 ? ? -36.69 116.03 196 20 LEU A 43 ? ? -170.35 129.04 197 20 GLU A 48 ? ? -39.01 156.84 198 20 GLN A 50 ? ? -170.94 131.19 199 20 SER A 99 ? ? -91.50 43.82 200 20 ASP A 100 ? ? -34.58 94.89 201 20 GLU A 107 ? ? -80.43 -72.19 202 20 VAL A 115 ? ? -88.68 46.23 203 20 SER A 119 ? ? -46.26 107.23 #