HEADER PROTEIN BINDING 20-APR-06 2DM3 TITLE SOLUTION STRUCTURE OF THE SECOND IG DOMAIN OF HUMAN PALLADIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: KIAA0992 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG; COMPND 5 SYNONYM: PALLADIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIAA0992; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050829-23; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, KIAA0992, MYOPALLADIN, ACTIN-ASSOCIATED SCAFFOLD, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DM3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DM3 1 VERSN REVDAT 1 24-APR-07 2DM3 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND IG DOMAIN OF HUMAN PALLADIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DM3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025574. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.89MM UNIFORMLY 13C AND 15N REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3; REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 -173.43 -69.80 REMARK 500 1 GLU A 23 138.53 -35.45 REMARK 500 1 THR A 38 105.03 -175.49 REMARK 500 1 GLU A 71 124.43 -172.37 REMARK 500 1 PRO A 72 -178.83 -69.73 REMARK 500 1 PRO A 107 1.90 -69.79 REMARK 500 2 ASP A 46 50.47 71.25 REMARK 500 2 PRO A 72 -174.43 -69.80 REMARK 500 2 ARG A 88 -37.15 -36.93 REMARK 500 2 SER A 105 53.55 -117.72 REMARK 500 3 PRO A 10 98.83 -69.70 REMARK 500 3 PRO A 16 -177.56 -69.74 REMARK 500 3 THR A 38 109.46 -166.87 REMARK 500 3 GLU A 62 -71.15 -71.02 REMARK 500 3 PRO A 72 -164.24 -69.84 REMARK 500 3 ALA A 102 170.59 -52.98 REMARK 500 3 SER A 109 152.35 -49.86 REMARK 500 4 SER A 2 93.13 -66.86 REMARK 500 4 SER A 5 46.37 -92.21 REMARK 500 4 PRO A 16 -166.60 -69.72 REMARK 500 4 GLU A 23 143.19 -35.69 REMARK 500 4 PRO A 37 -177.96 -69.75 REMARK 500 4 PRO A 72 -165.23 -69.72 REMARK 500 4 ALA A 102 155.74 -41.92 REMARK 500 4 PRO A 107 85.94 -69.75 REMARK 500 5 SER A 3 109.64 -48.47 REMARK 500 5 SER A 5 92.78 -68.80 REMARK 500 5 ARG A 9 139.21 -39.38 REMARK 500 5 GLU A 23 139.96 -35.08 REMARK 500 5 PRO A 37 -165.44 -69.72 REMARK 500 5 PRO A 72 -179.19 -69.78 REMARK 500 6 SER A 5 48.11 -105.59 REMARK 500 6 PRO A 16 -175.48 -69.75 REMARK 500 6 PRO A 37 -175.20 -69.82 REMARK 500 6 PRO A 72 -170.62 -69.75 REMARK 500 6 ASP A 77 -38.37 -39.40 REMARK 500 6 ALA A 102 158.58 -48.20 REMARK 500 6 SER A 105 110.68 -167.30 REMARK 500 7 PRO A 16 -170.84 -69.79 REMARK 500 7 GLU A 23 139.29 -35.20 REMARK 500 7 PRO A 37 -166.84 -69.76 REMARK 500 7 GLU A 62 -73.26 -80.23 REMARK 500 7 ASN A 63 -34.36 -34.28 REMARK 500 8 PRO A 16 -177.45 -69.80 REMARK 500 8 GLU A 23 141.05 -39.11 REMARK 500 8 ALA A 102 162.79 -43.54 REMARK 500 9 SER A 6 -176.00 -52.49 REMARK 500 9 PRO A 37 -172.73 -69.75 REMARK 500 9 SER A 54 -57.85 -134.99 REMARK 500 9 ARG A 61 -178.48 -64.66 REMARK 500 REMARK 500 THIS ENTRY HAS 110 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DM3 A 8 104 GB 4589628 BAA76836 522 618 SEQADV 2DM3 GLY A 1 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 2 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 3 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 GLY A 4 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 5 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 6 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 GLY A 7 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 105 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 GLY A 106 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 PRO A 107 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 108 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 SER A 109 GB 4589628 CLONING ARTIFACT SEQADV 2DM3 GLY A 110 GB 4589628 CLONING ARTIFACT SEQRES 1 A 110 GLY SER SER GLY SER SER GLY PHE ARG PRO HIS PHE LEU SEQRES 2 A 110 GLN ALA PRO GLY ASP LEU THR VAL GLN GLU GLY LYS LEU SEQRES 3 A 110 CYS ARG MET ASP CYS LYS VAL SER GLY LEU PRO THR PRO SEQRES 4 A 110 ASP LEU SER TRP GLN LEU ASP GLY LYS PRO VAL ARG PRO SEQRES 5 A 110 ASP SER ALA HIS LYS MET LEU VAL ARG GLU ASN GLY VAL SEQRES 6 A 110 HIS SER LEU ILE ILE GLU PRO VAL THR SER ARG ASP ALA SEQRES 7 A 110 GLY ILE TYR THR CYS ILE ALA THR ASN ARG ALA GLY GLN SEQRES 8 A 110 ASN SER PHE SER LEU GLU LEU VAL VAL ALA ALA LYS GLU SEQRES 9 A 110 SER GLY PRO SER SER GLY HELIX 1 1 THR A 74 ALA A 78 5 5 SHEET 1 A 4 HIS A 11 GLN A 14 0 SHEET 2 A 4 ASP A 30 SER A 34 -1 O SER A 34 N HIS A 11 SHEET 3 A 4 HIS A 66 ILE A 70 -1 O HIS A 66 N CYS A 31 SHEET 4 A 4 HIS A 56 VAL A 60 -1 N LYS A 57 O ILE A 69 SHEET 1 B 2 ASP A 18 GLN A 22 0 SHEET 2 B 2 GLU A 97 ALA A 101 1 O VAL A 99 N LEU A 19 SHEET 1 C 3 ASP A 40 SER A 42 0 SHEET 2 C 3 CYS A 83 THR A 86 -1 O THR A 86 N ASP A 40 SHEET 3 C 3 GLN A 91 PHE A 94 -1 O ASN A 92 N ALA A 85 CISPEP 1 LEU A 36 PRO A 37 1 -0.13 CISPEP 2 GLU A 71 PRO A 72 1 -0.07 CISPEP 3 LEU A 36 PRO A 37 2 -0.11 CISPEP 4 GLU A 71 PRO A 72 2 -0.01 CISPEP 5 LEU A 36 PRO A 37 3 -0.16 CISPEP 6 GLU A 71 PRO A 72 3 0.05 CISPEP 7 LEU A 36 PRO A 37 4 -0.13 CISPEP 8 GLU A 71 PRO A 72 4 -0.05 CISPEP 9 LEU A 36 PRO A 37 5 -0.14 CISPEP 10 GLU A 71 PRO A 72 5 0.01 CISPEP 11 LEU A 36 PRO A 37 6 -0.08 CISPEP 12 GLU A 71 PRO A 72 6 -0.05 CISPEP 13 LEU A 36 PRO A 37 7 -0.15 CISPEP 14 GLU A 71 PRO A 72 7 0.00 CISPEP 15 LEU A 36 PRO A 37 8 -0.10 CISPEP 16 GLU A 71 PRO A 72 8 0.04 CISPEP 17 LEU A 36 PRO A 37 9 -0.10 CISPEP 18 GLU A 71 PRO A 72 9 0.03 CISPEP 19 LEU A 36 PRO A 37 10 -0.15 CISPEP 20 GLU A 71 PRO A 72 10 0.02 CISPEP 21 LEU A 36 PRO A 37 11 -0.23 CISPEP 22 GLU A 71 PRO A 72 11 0.03 CISPEP 23 LEU A 36 PRO A 37 12 -0.15 CISPEP 24 GLU A 71 PRO A 72 12 0.04 CISPEP 25 LEU A 36 PRO A 37 13 -0.19 CISPEP 26 GLU A 71 PRO A 72 13 -0.01 CISPEP 27 LEU A 36 PRO A 37 14 -0.10 CISPEP 28 GLU A 71 PRO A 72 14 0.02 CISPEP 29 LEU A 36 PRO A 37 15 -0.16 CISPEP 30 GLU A 71 PRO A 72 15 0.03 CISPEP 31 LEU A 36 PRO A 37 16 -0.11 CISPEP 32 GLU A 71 PRO A 72 16 -0.01 CISPEP 33 LEU A 36 PRO A 37 17 -0.14 CISPEP 34 GLU A 71 PRO A 72 17 -0.01 CISPEP 35 LEU A 36 PRO A 37 18 -0.15 CISPEP 36 GLU A 71 PRO A 72 18 0.02 CISPEP 37 LEU A 36 PRO A 37 19 -0.02 CISPEP 38 GLU A 71 PRO A 72 19 0.03 CISPEP 39 LEU A 36 PRO A 37 20 -0.12 CISPEP 40 GLU A 71 PRO A 72 20 0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1