HEADER LIPID TRANSPORT 20-APR-06 2DM4 TITLE SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN SORLA/LR11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTILIN-RELATED RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3; COMPND 5 SYNONYM: SORTING PROTEIN-RELATED RECEPTOR CONTAINING LDLR CLASS A COMPND 6 REPEATS, SORLA, SORLA-1, LOW-DENSITY LIPOPROTEIN RECEPTOR RELATIVE COMPND 7 WITH 11 LIGAND-BINDING REPEATS, LDLR RELATIVE WITH 11 LIGAND-BINDING COMPND 8 REPEATS, LR11; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SORL1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-16; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, SORTING PROTEIN-RELATED RECEPTOR CONTAINING LDLR CLASS KEYWDS 2 A REPEATS, SORLA, LOW-DENSITY LIPOPROTEIN RECEPTOR RELATIVE WITH 11 KEYWDS 3 LIGAND-BINDING REPEATS, LR11, ALZHEIMER'S DISEASE, APP, BACE1, KEYWDS 4 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 5 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 6 INITIATIVE, RSGI, LIPID TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DM4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DM4 1 VERSN REVDAT 1 20-OCT-06 2DM4 0 JRNL AUTH T.NAGASHIMA,C.KUROSAKI,M.YOSHIDA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SECOND FN3 DOMAIN OF HUMAN JRNL TITL 2 SORLA/LR11 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3.2, CYANA 2.0.17 REMARK 3 AUTHORS : JEOL (DELTA NMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DM4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025575. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM UNIFORMLY 13C AND 15N REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3; REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA REMARK 210 SPECTROMETER MANUFACTURER : JEOL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 158.09 -44.21 REMARK 500 1 GLU A 42 -178.13 -170.55 REMARK 500 1 SER A 50 -33.56 -36.43 REMARK 500 1 SER A 52 127.69 -174.74 REMARK 500 1 LYS A 53 38.36 -87.25 REMARK 500 1 SER A 85 -37.88 -34.37 REMARK 500 1 ASN A 90 155.29 -49.03 REMARK 500 1 ASP A 93 93.41 -53.34 REMARK 500 1 LYS A 101 74.56 -103.92 REMARK 500 1 SER A 103 44.19 -105.91 REMARK 500 2 HIS A 37 46.24 -100.94 REMARK 500 2 LEU A 39 130.58 -39.64 REMARK 500 2 SER A 50 93.09 -47.75 REMARK 500 2 ASN A 90 157.98 -47.10 REMARK 500 2 ASP A 93 91.88 -53.16 REMARK 500 2 THR A 99 178.24 -58.00 REMARK 500 2 SER A 107 121.73 -174.89 REMARK 500 3 HIS A 37 36.07 -86.04 REMARK 500 3 SER A 50 118.71 -38.71 REMARK 500 3 ASN A 63 44.85 -83.15 REMARK 500 3 ASP A 93 90.74 -61.41 REMARK 500 4 PRO A 11 -176.65 -69.75 REMARK 500 4 TRP A 30 -176.48 -173.97 REMARK 500 4 SER A 50 94.03 -41.01 REMARK 500 4 ASN A 63 40.38 -85.47 REMARK 500 4 SER A 92 173.34 -58.26 REMARK 500 4 SER A 94 135.46 -35.59 REMARK 500 4 THR A 99 161.32 -48.37 REMARK 500 5 PRO A 11 -178.79 -69.75 REMARK 500 5 LEU A 39 126.03 -35.46 REMARK 500 5 SER A 50 87.44 -51.53 REMARK 500 5 SER A 85 -36.35 -38.83 REMARK 500 5 ASP A 93 94.16 -40.40 REMARK 500 6 SER A 3 174.39 -53.90 REMARK 500 6 SER A 5 41.96 -101.52 REMARK 500 6 PRO A 11 -176.94 -69.76 REMARK 500 6 SER A 50 94.76 -39.50 REMARK 500 6 ASN A 63 46.48 -82.10 REMARK 500 6 ASP A 93 97.65 -36.67 REMARK 500 6 SER A 94 145.77 -37.87 REMARK 500 6 PRO A 105 97.62 -69.77 REMARK 500 7 TRP A 30 -176.26 -171.64 REMARK 500 7 HIS A 37 42.61 -93.71 REMARK 500 7 SER A 50 97.44 -39.72 REMARK 500 7 SER A 52 147.94 -170.44 REMARK 500 7 ASN A 63 42.02 -81.57 REMARK 500 7 ASP A 93 97.37 -48.10 REMARK 500 7 THR A 99 173.27 -55.77 REMARK 500 8 ASP A 9 34.38 33.09 REMARK 500 8 ILE A 34 -33.31 -33.80 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001406.1 RELATED DB: TARGETDB DBREF 2DM4 A 8 102 UNP Q92673 SORL_HUMAN 1651 1745 SEQADV 2DM4 GLY A 1 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 2 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 3 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 GLY A 4 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 5 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 6 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 GLY A 7 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 103 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 GLY A 104 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 PRO A 105 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 106 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 SER A 107 UNP Q92673 CLONING ARTIFACT SEQADV 2DM4 GLY A 108 UNP Q92673 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY PRO ASP ALA PRO ARG ASN SEQRES 2 A 108 LEU GLN LEU SER LEU PRO ARG GLU ALA GLU GLY VAL ILE SEQRES 3 A 108 VAL GLY HIS TRP ALA PRO PRO ILE HIS THR HIS GLY LEU SEQRES 4 A 108 ILE ARG GLU TYR ILE VAL GLU TYR SER ARG SER GLY SER SEQRES 5 A 108 LYS MET TRP ALA SER GLN ARG ALA ALA SER ASN PHE THR SEQRES 6 A 108 GLU ILE LYS ASN LEU LEU VAL ASN THR LEU TYR THR VAL SEQRES 7 A 108 ARG VAL ALA ALA VAL THR SER ARG GLY ILE GLY ASN TRP SEQRES 8 A 108 SER ASP SER LYS SER ILE THR THR ILE LYS GLY SER GLY SEQRES 9 A 108 PRO SER SER GLY SHEET 1 A 3 ARG A 12 SER A 17 0 SHEET 2 A 3 ILE A 26 ALA A 31 -1 O ALA A 31 N ARG A 12 SHEET 3 A 3 PHE A 64 ILE A 67 -1 O ILE A 67 N ILE A 26 SHEET 1 B 4 ALA A 56 ALA A 60 0 SHEET 2 B 4 ILE A 40 ARG A 49 -1 N TYR A 47 O ALA A 56 SHEET 3 B 4 LEU A 75 THR A 84 -1 O ARG A 79 N GLU A 46 SHEET 4 B 4 ILE A 88 TRP A 91 -1 O GLY A 89 N ALA A 82 SHEET 1 C 4 ALA A 56 ALA A 60 0 SHEET 2 C 4 ILE A 40 ARG A 49 -1 N TYR A 47 O ALA A 56 SHEET 3 C 4 LEU A 75 THR A 84 -1 O ARG A 79 N GLU A 46 SHEET 4 C 4 LYS A 95 THR A 98 -1 O LYS A 95 N VAL A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1