data_2DM8 # _entry.id 2DM8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DM8 pdb_00002dm8 10.2210/pdb2dm8/pdb RCSB RCSB025579 ? ? WWPDB D_1000025579 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hso003006830.5 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DM8 _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Inoue, K.' 1 'Nagashima, T.' 2 'Hayashi, F.' 3 'Yokoyama, S.' 4 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 5 # _citation.id primary _citation.title 'Solution structure of the eighth PDZ domain of human InaD-like protein' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Inoue, K.' 1 ? primary 'Nagashima, T.' 2 ? primary 'Hayashi, F.' 3 ? primary 'Yokoyama, S.' 4 ? # _cell.entry_id 2DM8 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DM8 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'InaD-like protein' _entity.formula_weight 12296.590 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS HEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGPATCPIVPGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSS HEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hso003006830.5 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PRO n 1 9 ALA n 1 10 THR n 1 11 CYS n 1 12 PRO n 1 13 ILE n 1 14 VAL n 1 15 PRO n 1 16 GLY n 1 17 GLN n 1 18 GLU n 1 19 MET n 1 20 ILE n 1 21 ILE n 1 22 GLU n 1 23 ILE n 1 24 SER n 1 25 LYS n 1 26 GLY n 1 27 ARG n 1 28 SER n 1 29 GLY n 1 30 LEU n 1 31 GLY n 1 32 LEU n 1 33 SER n 1 34 ILE n 1 35 VAL n 1 36 GLY n 1 37 GLY n 1 38 LYS n 1 39 ASP n 1 40 THR n 1 41 PRO n 1 42 LEU n 1 43 ASN n 1 44 ALA n 1 45 ILE n 1 46 VAL n 1 47 ILE n 1 48 HIS n 1 49 GLU n 1 50 VAL n 1 51 TYR n 1 52 GLU n 1 53 GLU n 1 54 GLY n 1 55 ALA n 1 56 ALA n 1 57 ALA n 1 58 ARG n 1 59 ASP n 1 60 GLY n 1 61 ARG n 1 62 LEU n 1 63 TRP n 1 64 ALA n 1 65 GLY n 1 66 ASP n 1 67 GLN n 1 68 ILE n 1 69 LEU n 1 70 GLU n 1 71 VAL n 1 72 ASN n 1 73 GLY n 1 74 VAL n 1 75 ASP n 1 76 LEU n 1 77 ARG n 1 78 ASN n 1 79 SER n 1 80 SER n 1 81 HIS n 1 82 GLU n 1 83 GLU n 1 84 ALA n 1 85 ILE n 1 86 THR n 1 87 ALA n 1 88 LEU n 1 89 ARG n 1 90 GLN n 1 91 THR n 1 92 PRO n 1 93 GLN n 1 94 LYS n 1 95 VAL n 1 96 ARG n 1 97 LEU n 1 98 VAL n 1 99 VAL n 1 100 TYR n 1 101 ARG n 1 102 ASP n 1 103 GLU n 1 104 ALA n 1 105 HIS n 1 106 TYR n 1 107 ARG n 1 108 ASP n 1 109 GLU n 1 110 GLU n 1 111 SER n 1 112 GLY n 1 113 PRO n 1 114 SER n 1 115 SER n 1 116 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'INADL, PATJ' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050627-18 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code INADL_HUMAN _struct_ref.pdbx_db_accession Q8NI35 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1425 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DM8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 110 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8NI35 _struct_ref_seq.db_align_beg 1425 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1527 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 110 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DM8 GLY A 1 ? UNP Q8NI35 ? ? 'cloning artifact' 1 1 1 2DM8 SER A 2 ? UNP Q8NI35 ? ? 'cloning artifact' 2 2 1 2DM8 SER A 3 ? UNP Q8NI35 ? ? 'cloning artifact' 3 3 1 2DM8 GLY A 4 ? UNP Q8NI35 ? ? 'cloning artifact' 4 4 1 2DM8 SER A 5 ? UNP Q8NI35 ? ? 'cloning artifact' 5 5 1 2DM8 SER A 6 ? UNP Q8NI35 ? ? 'cloning artifact' 6 6 1 2DM8 GLY A 7 ? UNP Q8NI35 ? ? 'cloning artifact' 7 7 1 2DM8 SER A 111 ? UNP Q8NI35 ? ? 'cloning artifact' 111 8 1 2DM8 GLY A 112 ? UNP Q8NI35 ? ? 'cloning artifact' 112 9 1 2DM8 PRO A 113 ? UNP Q8NI35 ? ? 'cloning artifact' 113 10 1 2DM8 SER A 114 ? UNP Q8NI35 ? ? 'cloning artifact' 114 11 1 2DM8 SER A 115 ? UNP Q8NI35 ? ? 'cloning artifact' 115 12 1 2DM8 GLY A 116 ? UNP Q8NI35 ? ? 'cloning artifact' 116 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.13mM U-15N, 13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DM8 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DM8 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DM8 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.93191 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DM8 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DM8 _struct.title 'Solution structure of the eighth PDZ domain of human InaD-like protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DM8 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;PDZ domain, InaD-like protein, Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions, INADL, PATJ, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 54 ? GLY A 60 ? GLY A 54 GLY A 60 1 ? 7 HELX_P HELX_P2 2 SER A 80 ? GLN A 90 ? SER A 80 GLN A 90 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MET A 19 ? SER A 24 ? MET A 19 SER A 24 A 2 LYS A 94 ? TYR A 100 ? LYS A 94 TYR A 100 A 3 GLN A 67 ? VAL A 71 ? GLN A 67 VAL A 71 A 4 ILE A 45 ? VAL A 46 ? ILE A 45 VAL A 46 A 5 ILE A 34 ? VAL A 35 ? ILE A 34 VAL A 35 B 1 MET A 19 ? SER A 24 ? MET A 19 SER A 24 B 2 LYS A 94 ? TYR A 100 ? LYS A 94 TYR A 100 B 3 GLN A 67 ? VAL A 71 ? GLN A 67 VAL A 71 B 4 VAL A 74 ? ASP A 75 ? VAL A 74 ASP A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 23 ? N ILE A 23 O VAL A 95 ? O VAL A 95 A 2 3 O VAL A 98 ? O VAL A 98 N LEU A 69 ? N LEU A 69 A 3 4 N ILE A 68 ? N ILE A 68 O ILE A 45 ? O ILE A 45 B 1 2 N ILE A 23 ? N ILE A 23 O VAL A 95 ? O VAL A 95 B 2 3 O VAL A 98 ? O VAL A 98 N LEU A 69 ? N LEU A 69 B 3 4 N VAL A 71 ? N VAL A 71 O VAL A 74 ? O VAL A 74 # _database_PDB_matrix.entry_id 2DM8 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DM8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 ALA 84 84 84 ALA ALA A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 VAL 98 98 98 VAL VAL A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 ARG 101 101 101 ARG ARG A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 HIS 105 105 105 HIS HIS A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ARG 107 107 107 ARG ARG A . n A 1 108 ASP 108 108 108 ASP ASP A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 SER 111 111 111 SER SER A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 SER 114 114 114 SER SER A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 27 ? ? -124.05 -67.56 2 1 ASP A 39 ? ? 39.65 27.26 3 1 PRO A 41 ? ? -69.76 2.39 4 1 GLU A 53 ? ? -91.76 43.88 5 1 ARG A 77 ? ? -49.87 -18.84 6 1 PRO A 92 ? ? -69.73 -164.33 7 1 GLU A 103 ? ? -108.98 47.35 8 1 TYR A 106 ? ? -68.72 81.65 9 1 ARG A 107 ? ? -39.91 100.48 10 1 GLU A 109 ? ? -113.91 73.06 11 2 SER A 6 ? ? -35.66 117.94 12 2 PRO A 12 ? ? -69.82 -176.47 13 2 GLU A 18 ? ? -57.55 98.08 14 2 ASN A 43 ? ? -85.44 32.76 15 2 TYR A 51 ? ? -37.59 100.58 16 2 GLU A 53 ? ? -97.83 44.06 17 2 ALA A 55 ? ? -103.64 -63.95 18 2 ALA A 56 ? ? -38.49 -36.28 19 2 HIS A 81 ? ? -43.54 -72.56 20 2 PRO A 92 ? ? -69.79 -164.44 21 2 HIS A 105 ? ? -39.47 128.86 22 2 SER A 114 ? ? -37.95 110.45 23 3 SER A 6 ? ? -172.23 120.73 24 3 THR A 10 ? ? -37.20 -39.31 25 3 PRO A 12 ? ? -69.77 -169.07 26 3 ARG A 27 ? ? -123.03 -63.88 27 3 LYS A 38 ? ? -72.90 -72.82 28 3 ASP A 39 ? ? -38.52 -29.01 29 3 PRO A 41 ? ? -69.78 1.68 30 3 ALA A 44 ? ? -171.99 137.83 31 3 TYR A 51 ? ? -46.45 106.06 32 3 ALA A 64 ? ? -51.83 109.25 33 3 PRO A 92 ? ? -69.80 -169.06 34 3 GLU A 103 ? ? -104.15 43.48 35 3 HIS A 105 ? ? 73.88 52.13 36 4 THR A 10 ? ? 43.41 27.83 37 4 PRO A 41 ? ? -69.77 1.72 38 4 GLU A 53 ? ? -81.97 42.64 39 4 SER A 79 ? ? -43.84 157.99 40 4 HIS A 81 ? ? -41.55 -74.72 41 4 PRO A 92 ? ? -69.78 -163.91 42 4 ASP A 102 ? ? -48.79 161.53 43 5 SER A 5 ? ? -60.85 82.69 44 5 PRO A 8 ? ? -69.78 2.94 45 5 PRO A 12 ? ? -69.76 -164.66 46 5 PRO A 15 ? ? -69.77 -174.30 47 5 ASP A 39 ? ? 36.07 32.84 48 5 ASN A 43 ? ? -89.31 32.54 49 5 ALA A 56 ? ? -36.77 -29.01 50 5 ALA A 64 ? ? -56.34 109.85 51 5 ASN A 72 ? ? 38.91 32.79 52 5 PRO A 92 ? ? -69.74 -164.63 53 5 GLU A 103 ? ? -88.57 42.74 54 5 HIS A 105 ? ? -38.94 99.66 55 5 ARG A 107 ? ? -59.84 92.54 56 5 ASP A 108 ? ? -37.21 149.08 57 5 SER A 114 ? ? -59.70 103.25 58 6 LYS A 38 ? ? -101.58 -66.16 59 6 PRO A 41 ? ? -69.72 2.09 60 6 ALA A 44 ? ? -174.98 140.00 61 6 TYR A 51 ? ? -36.69 110.52 62 6 GLU A 53 ? ? -100.53 49.84 63 6 SER A 79 ? ? -55.60 170.54 64 6 HIS A 81 ? ? -49.07 -74.37 65 6 PRO A 92 ? ? -69.71 -165.17 66 7 SER A 3 ? ? -128.48 -57.16 67 7 PRO A 12 ? ? -69.81 -174.43 68 7 GLU A 18 ? ? -64.70 98.81 69 7 ASN A 43 ? ? 48.06 29.67 70 7 ALA A 44 ? ? -173.79 139.91 71 7 GLU A 53 ? ? -96.10 40.48 72 7 PRO A 92 ? ? -69.76 -165.29 73 7 ASP A 102 ? ? -48.59 154.79 74 8 PRO A 12 ? ? -69.79 -179.94 75 8 LYS A 25 ? ? -48.17 177.25 76 8 SER A 28 ? ? -121.00 -54.32 77 8 LYS A 38 ? ? -120.35 -73.52 78 8 PRO A 41 ? ? -69.77 2.44 79 8 HIS A 48 ? ? -53.47 -70.05 80 8 ALA A 64 ? ? -50.14 107.17 81 8 ARG A 77 ? ? -38.92 -29.65 82 8 PRO A 92 ? ? -69.79 -163.77 83 8 ASP A 102 ? ? -48.72 163.86 84 8 GLU A 109 ? ? -54.78 99.51 85 9 THR A 10 ? ? -100.28 40.44 86 9 LYS A 38 ? ? -126.05 -50.40 87 9 ASN A 43 ? ? 43.49 29.59 88 9 TYR A 51 ? ? -46.28 108.65 89 9 GLU A 53 ? ? -85.29 38.14 90 9 ASP A 66 ? ? -57.69 173.24 91 9 SER A 79 ? ? -58.00 174.68 92 9 PRO A 92 ? ? -69.79 -166.30 93 9 ASP A 102 ? ? -45.64 159.88 94 9 SER A 114 ? ? -38.82 111.73 95 10 LYS A 25 ? ? -47.52 170.94 96 10 ALA A 44 ? ? -170.76 130.78 97 10 ARG A 61 ? ? -107.95 -61.49 98 10 PRO A 92 ? ? -69.77 -169.26 99 10 GLU A 103 ? ? -88.99 47.24 100 10 ALA A 104 ? ? -96.76 -70.65 101 10 SER A 111 ? ? 34.57 43.79 102 11 PRO A 12 ? ? -69.77 -173.36 103 11 ARG A 27 ? ? 33.46 44.23 104 11 SER A 28 ? ? -170.11 110.26 105 11 LEU A 30 ? ? -34.83 148.00 106 11 PRO A 41 ? ? -69.78 1.24 107 11 TYR A 51 ? ? -34.44 130.54 108 11 HIS A 81 ? ? -34.44 -39.42 109 11 PRO A 92 ? ? -69.72 -167.22 110 11 SER A 114 ? ? -41.21 155.42 111 12 ILE A 13 ? ? -32.56 108.83 112 12 ASP A 39 ? ? 49.28 27.48 113 12 PRO A 41 ? ? -69.78 2.67 114 12 TYR A 51 ? ? -47.25 101.67 115 12 GLU A 53 ? ? -89.44 41.26 116 12 PRO A 92 ? ? -69.79 -165.64 117 12 ASP A 108 ? ? -50.95 173.07 118 13 SER A 2 ? ? -100.37 77.62 119 13 PRO A 8 ? ? -69.79 2.71 120 13 THR A 10 ? ? -131.86 -51.75 121 13 LEU A 30 ? ? -124.47 -65.71 122 13 PRO A 41 ? ? -69.66 2.83 123 13 TYR A 51 ? ? -52.29 96.33 124 13 GLU A 52 ? ? -49.70 -19.03 125 13 GLU A 53 ? ? -84.83 37.94 126 13 ALA A 56 ? ? -38.46 -27.44 127 13 ALA A 64 ? ? -50.89 92.77 128 13 ASN A 72 ? ? 40.99 29.41 129 13 ASP A 108 ? ? -66.34 -177.88 130 13 SER A 111 ? ? -39.74 116.13 131 14 SER A 3 ? ? -121.03 -53.85 132 14 ARG A 27 ? ? 36.65 30.90 133 14 LEU A 30 ? ? -34.64 134.26 134 14 LYS A 38 ? ? -99.93 -73.62 135 14 PRO A 41 ? ? -69.70 2.23 136 14 ASN A 43 ? ? -86.49 30.52 137 14 GLU A 53 ? ? -94.75 48.81 138 14 ASN A 72 ? ? 47.71 27.22 139 14 SER A 79 ? ? -49.57 150.61 140 14 SER A 80 ? ? -66.70 -175.35 141 14 PRO A 92 ? ? -69.74 -165.94 142 14 PRO A 113 ? ? -69.78 90.92 143 14 SER A 114 ? ? -65.10 92.76 144 15 PRO A 12 ? ? -69.76 -172.64 145 15 LEU A 30 ? ? -36.84 141.45 146 15 PRO A 92 ? ? -69.76 -164.17 147 15 ASP A 102 ? ? -45.64 152.36 148 15 HIS A 105 ? ? 39.48 50.60 149 16 THR A 10 ? ? 37.81 42.29 150 16 PRO A 12 ? ? -69.77 -174.38 151 16 PRO A 41 ? ? -69.75 2.15 152 16 TYR A 51 ? ? -40.86 101.59 153 16 GLU A 53 ? ? -90.37 48.46 154 16 ARG A 58 ? ? -39.25 -36.08 155 16 PRO A 92 ? ? -69.76 -165.04 156 16 ASP A 102 ? ? -47.01 154.51 157 17 PRO A 8 ? ? -69.80 -162.52 158 17 ALA A 9 ? ? 74.99 36.70 159 17 ILE A 13 ? ? -36.49 127.52 160 17 ASP A 39 ? ? -84.62 33.53 161 17 ASN A 43 ? ? -85.73 36.53 162 17 ARG A 61 ? ? -100.16 -60.45 163 17 ALA A 64 ? ? -52.71 108.44 164 17 ARG A 77 ? ? -34.02 -37.13 165 17 SER A 79 ? ? -44.63 157.09 166 17 SER A 114 ? ? -121.33 -53.07 167 18 SER A 2 ? ? -35.29 138.01 168 18 SER A 3 ? ? -41.31 154.22 169 18 ILE A 13 ? ? -59.07 95.73 170 18 LYS A 38 ? ? -92.11 -69.55 171 18 TYR A 51 ? ? -39.82 128.13 172 18 GLU A 53 ? ? -89.33 33.49 173 18 ALA A 56 ? ? -35.27 -39.81 174 18 ARG A 58 ? ? -39.43 -37.31 175 18 ALA A 64 ? ? -59.61 103.92 176 18 PRO A 92 ? ? -69.79 -164.24 177 18 HIS A 105 ? ? -105.37 41.94 178 19 LYS A 25 ? ? -39.11 114.82 179 19 LEU A 30 ? ? -47.53 152.01 180 19 ASP A 39 ? ? -93.64 45.78 181 19 ASN A 43 ? ? 39.31 32.80 182 19 ALA A 64 ? ? -50.71 108.05 183 19 PRO A 92 ? ? -69.77 -169.92 184 20 SER A 3 ? ? -41.89 104.49 185 20 ALA A 9 ? ? -106.17 -61.68 186 20 PRO A 12 ? ? -69.75 -165.45 187 20 ASP A 39 ? ? -80.33 44.08 188 20 PRO A 41 ? ? -69.75 0.14 189 20 ALA A 44 ? ? -171.11 140.20 190 20 TYR A 51 ? ? -35.03 104.40 191 20 GLU A 53 ? ? -99.34 55.08 192 20 ARG A 58 ? ? -39.26 -37.53 193 20 ALA A 64 ? ? -50.14 109.07 194 20 PRO A 92 ? ? -69.81 -170.53 195 20 ASP A 102 ? ? -48.94 154.75 196 20 HIS A 105 ? ? -34.24 110.71 197 20 SER A 111 ? ? -45.93 159.73 #