HEADER PROTEIN BINDING 20-APR-06 2DM8 TITLE SOLUTION STRUCTURE OF THE EIGHTH PDZ DOMAIN OF HUMAN INAD-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT JUNCTION COMPND 6 PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050627-18; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT KEYWDS 3 JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DM8 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DM8 1 VERSN REVDAT 1 20-OCT-06 2DM8 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE EIGHTH PDZ DOMAIN OF HUMAN JRNL TITL 2 INAD-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DM8 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025579. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.13MM U-15N, 13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 27 -67.56 -124.05 REMARK 500 1 ASP A 39 27.26 39.65 REMARK 500 1 PRO A 41 2.39 -69.76 REMARK 500 1 GLU A 53 43.88 -91.76 REMARK 500 1 ARG A 77 -18.84 -49.87 REMARK 500 1 PRO A 92 -164.33 -69.73 REMARK 500 1 GLU A 103 47.35 -108.98 REMARK 500 1 TYR A 106 81.65 -68.72 REMARK 500 1 ARG A 107 100.48 -39.91 REMARK 500 1 GLU A 109 73.06 -113.91 REMARK 500 2 SER A 6 117.94 -35.66 REMARK 500 2 PRO A 12 -176.47 -69.82 REMARK 500 2 GLU A 18 98.08 -57.55 REMARK 500 2 ASN A 43 32.76 -85.44 REMARK 500 2 TYR A 51 100.58 -37.59 REMARK 500 2 GLU A 53 44.06 -97.83 REMARK 500 2 ALA A 55 -63.95 -103.64 REMARK 500 2 ALA A 56 -36.28 -38.49 REMARK 500 2 HIS A 81 -72.56 -43.54 REMARK 500 2 PRO A 92 -164.44 -69.79 REMARK 500 2 HIS A 105 128.86 -39.47 REMARK 500 2 SER A 114 110.45 -37.95 REMARK 500 3 SER A 6 120.73 -172.23 REMARK 500 3 THR A 10 -39.31 -37.20 REMARK 500 3 PRO A 12 -169.07 -69.77 REMARK 500 3 ARG A 27 -63.88 -123.03 REMARK 500 3 LYS A 38 -72.82 -72.90 REMARK 500 3 ASP A 39 -29.01 -38.52 REMARK 500 3 PRO A 41 1.68 -69.78 REMARK 500 3 ALA A 44 137.83 -171.99 REMARK 500 3 TYR A 51 106.06 -46.45 REMARK 500 3 ALA A 64 109.25 -51.83 REMARK 500 3 PRO A 92 -169.06 -69.80 REMARK 500 3 GLU A 103 43.48 -104.15 REMARK 500 3 HIS A 105 52.13 73.88 REMARK 500 4 THR A 10 27.83 43.41 REMARK 500 4 PRO A 41 1.72 -69.77 REMARK 500 4 GLU A 53 42.64 -81.97 REMARK 500 4 SER A 79 157.99 -43.84 REMARK 500 4 HIS A 81 -74.72 -41.55 REMARK 500 4 PRO A 92 -163.91 -69.78 REMARK 500 4 ASP A 102 161.53 -48.79 REMARK 500 5 SER A 5 82.69 -60.85 REMARK 500 5 PRO A 8 2.94 -69.78 REMARK 500 5 PRO A 12 -164.66 -69.76 REMARK 500 5 PRO A 15 -174.30 -69.77 REMARK 500 5 ASP A 39 32.84 36.07 REMARK 500 5 ASN A 43 32.54 -89.31 REMARK 500 5 ALA A 56 -29.01 -36.77 REMARK 500 5 ALA A 64 109.85 -56.34 REMARK 500 REMARK 500 THIS ENTRY HAS 197 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.5 RELATED DB: TARGETDB DBREF 2DM8 A 8 110 UNP Q8NI35 INADL_HUMAN 1425 1527 SEQADV 2DM8 GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 111 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 112 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 PRO A 113 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 114 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 SER A 115 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DM8 GLY A 116 UNP Q8NI35 CLONING ARTIFACT SEQRES 1 A 116 GLY SER SER GLY SER SER GLY PRO ALA THR CYS PRO ILE SEQRES 2 A 116 VAL PRO GLY GLN GLU MET ILE ILE GLU ILE SER LYS GLY SEQRES 3 A 116 ARG SER GLY LEU GLY LEU SER ILE VAL GLY GLY LYS ASP SEQRES 4 A 116 THR PRO LEU ASN ALA ILE VAL ILE HIS GLU VAL TYR GLU SEQRES 5 A 116 GLU GLY ALA ALA ALA ARG ASP GLY ARG LEU TRP ALA GLY SEQRES 6 A 116 ASP GLN ILE LEU GLU VAL ASN GLY VAL ASP LEU ARG ASN SEQRES 7 A 116 SER SER HIS GLU GLU ALA ILE THR ALA LEU ARG GLN THR SEQRES 8 A 116 PRO GLN LYS VAL ARG LEU VAL VAL TYR ARG ASP GLU ALA SEQRES 9 A 116 HIS TYR ARG ASP GLU GLU SER GLY PRO SER SER GLY HELIX 1 1 GLY A 54 GLY A 60 1 7 HELIX 2 2 SER A 80 GLN A 90 1 11 SHEET 1 A 5 MET A 19 SER A 24 0 SHEET 2 A 5 LYS A 94 TYR A 100 -1 O VAL A 95 N ILE A 23 SHEET 3 A 5 GLN A 67 VAL A 71 -1 N LEU A 69 O VAL A 98 SHEET 4 A 5 ILE A 45 VAL A 46 -1 O ILE A 45 N ILE A 68 SHEET 5 A 5 ILE A 34 VAL A 35 -1 SHEET 1 B 4 MET A 19 SER A 24 0 SHEET 2 B 4 LYS A 94 TYR A 100 -1 O VAL A 95 N ILE A 23 SHEET 3 B 4 GLN A 67 VAL A 71 -1 N LEU A 69 O VAL A 98 SHEET 4 B 4 VAL A 74 ASP A 75 -1 O VAL A 74 N VAL A 71 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1