data_2DMB # _entry.id 2DMB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DMB pdb_00002dmb 10.2210/pdb2dmb/pdb RCSB RCSB025582 ? ? WWPDB D_1000025582 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002600.8 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DMB _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tomizawa, T.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Watanabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the 15th Filamin domain from human Filamin-B' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tomizawa, T.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watanabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Filamin-B _entity.formula_weight 12352.475 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Filamin domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP- 280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGT YVIYVRFGGVDIPNSPFTVMATDGEVTAVEEAPVNACPSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGT YVIYVRFGGVDIPNSPFTVMATDGEVTAVEEAPVNACPSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002600.8 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 THR n 1 9 GLY n 1 10 ASP n 1 11 ALA n 1 12 SER n 1 13 LYS n 1 14 CYS n 1 15 LEU n 1 16 ALA n 1 17 THR n 1 18 GLY n 1 19 PRO n 1 20 GLY n 1 21 ILE n 1 22 ALA n 1 23 SER n 1 24 THR n 1 25 VAL n 1 26 LYS n 1 27 THR n 1 28 GLY n 1 29 GLU n 1 30 GLU n 1 31 VAL n 1 32 GLY n 1 33 PHE n 1 34 VAL n 1 35 VAL n 1 36 ASP n 1 37 ALA n 1 38 LYS n 1 39 THR n 1 40 ALA n 1 41 GLY n 1 42 LYS n 1 43 GLY n 1 44 LYS n 1 45 VAL n 1 46 THR n 1 47 CYS n 1 48 THR n 1 49 VAL n 1 50 LEU n 1 51 THR n 1 52 PRO n 1 53 ASP n 1 54 GLY n 1 55 THR n 1 56 GLU n 1 57 ALA n 1 58 GLU n 1 59 ALA n 1 60 ASP n 1 61 VAL n 1 62 ILE n 1 63 GLU n 1 64 ASN n 1 65 GLU n 1 66 ASP n 1 67 GLY n 1 68 THR n 1 69 TYR n 1 70 ASP n 1 71 ILE n 1 72 PHE n 1 73 TYR n 1 74 THR n 1 75 ALA n 1 76 ALA n 1 77 LYS n 1 78 PRO n 1 79 GLY n 1 80 THR n 1 81 TYR n 1 82 VAL n 1 83 ILE n 1 84 TYR n 1 85 VAL n 1 86 ARG n 1 87 PHE n 1 88 GLY n 1 89 GLY n 1 90 VAL n 1 91 ASP n 1 92 ILE n 1 93 PRO n 1 94 ASN n 1 95 SER n 1 96 PRO n 1 97 PHE n 1 98 THR n 1 99 VAL n 1 100 MET n 1 101 ALA n 1 102 THR n 1 103 ASP n 1 104 GLY n 1 105 GLU n 1 106 VAL n 1 107 THR n 1 108 ALA n 1 109 VAL n 1 110 GLU n 1 111 GLU n 1 112 ALA n 1 113 PRO n 1 114 VAL n 1 115 ASN n 1 116 ALA n 1 117 CYS n 1 118 PRO n 1 119 SER n 1 120 GLY n 1 121 PRO n 1 122 SER n 1 123 SER n 1 124 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene FLNB _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051205-15 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FLNB_HUMAN _struct_ref.pdbx_db_accession O75369 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;TGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRF GGVDIPNSPFTVMATDGEVTAVEEAPVNACP ; _struct_ref.pdbx_align_begin 1611 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DMB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 118 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O75369 _struct_ref_seq.db_align_beg 1611 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1721 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DMB GLY A 1 ? UNP O75369 ? ? 'cloning artifact' 1 1 1 2DMB SER A 2 ? UNP O75369 ? ? 'cloning artifact' 2 2 1 2DMB SER A 3 ? UNP O75369 ? ? 'cloning artifact' 3 3 1 2DMB GLY A 4 ? UNP O75369 ? ? 'cloning artifact' 4 4 1 2DMB SER A 5 ? UNP O75369 ? ? 'cloning artifact' 5 5 1 2DMB SER A 6 ? UNP O75369 ? ? 'cloning artifact' 6 6 1 2DMB GLY A 7 ? UNP O75369 ? ? 'cloning artifact' 7 7 1 2DMB SER A 119 ? UNP O75369 ? ? 'cloning artifact' 119 8 1 2DMB GLY A 120 ? UNP O75369 ? ? 'cloning artifact' 120 9 1 2DMB PRO A 121 ? UNP O75369 ? ? 'cloning artifact' 121 10 1 2DMB SER A 122 ? UNP O75369 ? ? 'cloning artifact' 122 11 1 2DMB SER A 123 ? UNP O75369 ? ? 'cloning artifact' 123 12 1 2DMB GLY A 124 ? UNP O75369 ? ? 'cloning artifact' 124 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.21mM Filamin domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DMB _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DMB _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DMB _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9742 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DMB _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DMB _struct.title 'Solution structure of the 15th Filamin domain from human Filamin-B' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DMB _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' _struct_keywords.text ;beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, STRUCTURAL PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLY _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 18 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 22 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLY _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 18 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 22 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 1 -0.15 2 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 2 0.00 3 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 3 -0.02 4 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 4 0.05 5 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 5 -0.10 6 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 6 -0.04 7 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 7 -0.03 8 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 8 -0.03 9 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 9 0.07 10 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 10 -0.06 11 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 11 0.03 12 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 12 -0.11 13 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 13 0.06 14 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 14 0.03 15 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 15 -0.08 16 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 16 -0.05 17 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 17 0.00 18 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 18 -0.02 19 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 19 -0.02 20 SER 95 A . ? SER 95 A PRO 96 A ? PRO 96 A 20 0.01 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 15 ? THR A 17 ? LEU A 15 THR A 17 A 2 GLU A 30 ? ASP A 36 ? GLU A 30 ASP A 36 A 3 TYR A 69 ? THR A 74 ? TYR A 69 THR A 74 A 4 ASP A 60 ? GLU A 63 ? ASP A 60 GLU A 63 B 1 THR A 24 ? LYS A 26 ? THR A 24 LYS A 26 B 2 PHE A 97 ? THR A 102 ? PHE A 97 THR A 102 B 3 GLY A 79 ? PHE A 87 ? GLY A 79 PHE A 87 B 4 VAL A 45 ? LEU A 50 ? VAL A 45 LEU A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 15 ? N LEU A 15 O ASP A 36 ? O ASP A 36 A 2 3 N PHE A 33 ? N PHE A 33 O ILE A 71 ? O ILE A 71 A 3 4 O ASP A 70 ? O ASP A 70 N ILE A 62 ? N ILE A 62 B 1 2 N VAL A 25 ? N VAL A 25 O MET A 100 ? O MET A 100 B 2 3 O VAL A 99 ? O VAL A 99 N TYR A 81 ? N TYR A 81 B 3 4 O VAL A 82 ? O VAL A 82 N LEU A 50 ? N LEU A 50 # _database_PDB_matrix.entry_id 2DMB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DMB _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 THR 27 27 27 THR THR A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 THR 55 55 55 THR THR A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ILE 83 83 83 ILE ILE A . n A 1 84 TYR 84 84 84 TYR TYR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLY 89 89 89 GLY GLY A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 ASP 91 91 91 ASP ASP A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 PRO 96 96 96 PRO PRO A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 THR 98 98 98 THR THR A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 MET 100 100 100 MET MET A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 THR 102 102 102 THR THR A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 THR 107 107 107 THR THR A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 GLU 110 110 110 GLU GLU A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 ASN 115 115 115 ASN ASN A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 PRO 121 121 121 PRO PRO A . n A 1 122 SER 122 122 122 SER SER A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 GLY 124 124 124 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 8 ? ? -134.23 -43.96 2 1 LYS A 38 ? ? -102.40 -69.76 3 1 PRO A 52 ? ? -69.84 0.66 4 1 PRO A 93 ? ? -69.73 2.81 5 1 PRO A 118 ? ? -69.83 -179.98 6 2 SER A 6 ? ? -88.00 42.28 7 2 LYS A 38 ? ? -106.45 -64.60 8 2 ALA A 40 ? ? -81.63 38.97 9 2 ILE A 92 ? ? -49.88 154.22 10 2 PRO A 93 ? ? -69.74 3.27 11 2 VAL A 106 ? ? 37.77 37.51 12 2 ASN A 115 ? ? -90.20 -61.73 13 3 LYS A 38 ? ? -98.58 -70.03 14 3 ILE A 92 ? ? -43.46 154.87 15 3 ASN A 115 ? ? -35.84 153.47 16 3 PRO A 121 ? ? -69.80 -175.89 17 4 SER A 23 ? ? -35.29 -37.56 18 4 PRO A 93 ? ? -69.73 3.17 19 4 PRO A 121 ? ? -69.77 -174.27 20 5 ALA A 40 ? ? -36.89 -35.57 21 5 ILE A 92 ? ? -49.70 156.57 22 5 PRO A 93 ? ? -69.81 3.63 23 5 ALA A 108 ? ? -39.01 125.02 24 5 PRO A 118 ? ? -69.80 -174.40 25 6 SER A 3 ? ? -49.54 158.90 26 6 ASP A 66 ? ? -85.38 31.32 27 6 ILE A 92 ? ? -43.89 155.75 28 6 PRO A 93 ? ? -69.73 2.86 29 6 PRO A 96 ? ? -69.72 -178.82 30 6 ASN A 115 ? ? -37.47 136.75 31 6 SER A 122 ? ? -174.20 110.66 32 7 SER A 2 ? ? -169.12 119.13 33 7 ALA A 40 ? ? -39.02 -34.53 34 7 ASP A 91 ? ? -68.82 94.94 35 7 ILE A 92 ? ? -40.04 158.16 36 7 PRO A 93 ? ? -69.77 3.10 37 7 PRO A 113 ? ? -69.75 88.01 38 8 PRO A 52 ? ? -69.77 2.72 39 8 ASP A 66 ? ? -86.50 34.38 40 8 ILE A 92 ? ? -39.01 156.65 41 8 PRO A 93 ? ? -69.79 2.61 42 8 GLU A 105 ? ? -43.89 150.20 43 8 PRO A 113 ? ? -69.82 2.88 44 8 VAL A 114 ? ? -35.40 141.37 45 9 SER A 3 ? ? -103.64 44.19 46 9 SER A 5 ? ? -62.47 95.95 47 9 ASP A 66 ? ? -84.96 32.37 48 9 ILE A 92 ? ? -41.35 155.51 49 9 PRO A 93 ? ? -69.81 3.40 50 9 VAL A 114 ? ? -34.68 139.24 51 9 PRO A 118 ? ? -69.79 90.62 52 10 SER A 3 ? ? -170.69 130.50 53 10 SER A 5 ? ? -170.20 144.08 54 10 SER A 6 ? ? -120.29 -67.63 55 10 ILE A 92 ? ? -41.22 156.21 56 10 PRO A 93 ? ? -69.74 2.09 57 11 SER A 5 ? ? -37.90 156.35 58 11 SER A 23 ? ? -35.84 -35.89 59 11 ALA A 40 ? ? -35.04 -34.14 60 11 ILE A 92 ? ? -49.10 154.44 61 11 PRO A 93 ? ? -69.86 3.09 62 11 PRO A 96 ? ? -69.80 -179.82 63 11 ALA A 108 ? ? -162.16 113.05 64 12 CYS A 14 ? ? -49.23 169.96 65 12 PRO A 52 ? ? -69.80 1.09 66 12 ASP A 66 ? ? -84.35 34.44 67 12 ILE A 92 ? ? -43.90 156.92 68 12 PRO A 93 ? ? -69.83 3.58 69 12 PRO A 113 ? ? -69.78 1.82 70 12 VAL A 114 ? ? -34.29 121.93 71 12 PRO A 118 ? ? -69.81 94.05 72 12 SER A 122 ? ? -38.07 121.60 73 13 ALA A 40 ? ? -84.04 35.25 74 13 ILE A 92 ? ? -46.98 157.54 75 13 PRO A 93 ? ? -69.74 3.40 76 13 PRO A 96 ? ? -69.76 -176.67 77 14 SER A 6 ? ? -47.85 152.45 78 14 THR A 8 ? ? -99.26 -61.84 79 14 ALA A 40 ? ? -35.96 -36.09 80 14 PRO A 52 ? ? -69.76 2.55 81 14 PRO A 93 ? ? -69.79 2.31 82 14 PRO A 96 ? ? -69.86 -179.02 83 14 GLU A 111 ? ? -34.99 136.02 84 15 LYS A 38 ? ? -94.98 -61.16 85 15 PRO A 52 ? ? -69.77 2.72 86 15 ASP A 66 ? ? -90.34 31.01 87 15 PRO A 93 ? ? -69.79 3.21 88 15 PRO A 96 ? ? -69.72 -176.07 89 15 GLU A 105 ? ? -36.98 154.03 90 15 ASN A 115 ? ? -37.72 95.56 91 15 CYS A 117 ? ? -36.73 144.26 92 15 SER A 119 ? ? -39.14 126.52 93 16 SER A 6 ? ? -102.59 42.55 94 16 ASP A 66 ? ? -85.41 32.55 95 16 ILE A 92 ? ? -43.59 154.76 96 16 PRO A 93 ? ? -69.69 3.01 97 16 GLU A 105 ? ? -44.30 158.90 98 16 SER A 119 ? ? -171.93 147.67 99 17 SER A 2 ? ? -132.94 -49.53 100 17 SER A 23 ? ? -39.58 -39.53 101 17 ASP A 66 ? ? -83.99 36.22 102 17 ASP A 91 ? ? -64.48 94.37 103 17 ILE A 92 ? ? -36.61 156.05 104 17 PRO A 93 ? ? -69.74 3.15 105 17 ALA A 108 ? ? -47.35 160.60 106 17 VAL A 114 ? ? -39.28 130.01 107 17 ALA A 116 ? ? -169.47 119.46 108 17 PRO A 118 ? ? -69.69 -171.42 109 17 PRO A 121 ? ? -69.76 -176.17 110 17 SER A 122 ? ? -174.94 132.90 111 18 ILE A 92 ? ? -40.89 155.35 112 18 PRO A 93 ? ? -69.70 3.80 113 18 ALA A 112 ? ? 72.78 53.23 114 19 SER A 6 ? ? -161.12 109.18 115 19 LYS A 38 ? ? -123.01 -52.06 116 19 ALA A 40 ? ? -34.52 -38.05 117 19 PRO A 52 ? ? -69.74 0.10 118 19 ASP A 66 ? ? -83.69 35.52 119 19 PRO A 78 ? ? -69.82 -171.69 120 19 PRO A 93 ? ? -69.77 2.90 121 19 VAL A 114 ? ? -34.25 123.76 122 19 SER A 119 ? ? -58.35 102.92 123 20 SER A 2 ? ? 37.92 41.63 124 20 SER A 23 ? ? -38.46 -28.75 125 20 LYS A 38 ? ? -104.28 -70.05 126 20 PRO A 52 ? ? -69.88 1.64 127 20 ILE A 92 ? ? -38.55 158.16 128 20 PRO A 93 ? ? -69.73 3.05 129 20 PRO A 118 ? ? -69.76 -175.09 #