data_2DME # _entry.id 2DME # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DME pdb_00002dme 10.2210/pdb2dme/pdb RCSB RCSB025585 ? ? WWPDB D_1000025585 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002200238.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DME _pdbx_database_status.recvd_initial_deposition_date 2006-04-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoneyama, M.' 1 'Tochio, N.' 2 'Koshiba, S.' 3 'Watabe, S.' 4 'Harada, T.' 5 'Kigawa, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the TFIIS domain II of human PHD finger protein 3' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoneyama, M.' 1 ? primary 'Tochio, N.' 2 ? primary 'Koshiba, S.' 3 ? primary 'Watabe, S.' 4 ? primary 'Harada, T.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'PHD finger protein 3' _entity.formula_weight 13609.664 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'TFSII_M domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNI LFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGSADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNI LFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002200238.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 SER n 1 9 ALA n 1 10 ASP n 1 11 GLN n 1 12 ILE n 1 13 ARG n 1 14 GLN n 1 15 SER n 1 16 VAL n 1 17 ARG n 1 18 HIS n 1 19 SER n 1 20 LEU n 1 21 LYS n 1 22 ASP n 1 23 ILE n 1 24 LEU n 1 25 MET n 1 26 LYS n 1 27 ARG n 1 28 LEU n 1 29 THR n 1 30 ASP n 1 31 SER n 1 32 ASN n 1 33 LEU n 1 34 LYS n 1 35 VAL n 1 36 PRO n 1 37 GLU n 1 38 GLU n 1 39 LYS n 1 40 ALA n 1 41 ALA n 1 42 LYS n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 LYS n 1 47 ILE n 1 48 GLU n 1 49 LYS n 1 50 GLU n 1 51 LEU n 1 52 PHE n 1 53 SER n 1 54 PHE n 1 55 PHE n 1 56 ARG n 1 57 ASP n 1 58 THR n 1 59 ASP n 1 60 ALA n 1 61 LYS n 1 62 TYR n 1 63 LYS n 1 64 ASN n 1 65 LYS n 1 66 TYR n 1 67 ARG n 1 68 SER n 1 69 LEU n 1 70 MET n 1 71 PHE n 1 72 ASN n 1 73 LEU n 1 74 LYS n 1 75 ASP n 1 76 PRO n 1 77 LYS n 1 78 ASN n 1 79 ASN n 1 80 ILE n 1 81 LEU n 1 82 PHE n 1 83 LYS n 1 84 LYS n 1 85 VAL n 1 86 LEU n 1 87 LYS n 1 88 GLY n 1 89 GLU n 1 90 VAL n 1 91 THR n 1 92 PRO n 1 93 ASP n 1 94 HIS n 1 95 LEU n 1 96 ILE n 1 97 ARG n 1 98 MET n 1 99 SER n 1 100 PRO n 1 101 GLU n 1 102 GLU n 1 103 LEU n 1 104 ALA n 1 105 SER n 1 106 LYS n 1 107 GLU n 1 108 LEU n 1 109 ALA n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ARG n 1 114 ARG n 1 115 SER n 1 116 GLY n 1 117 PRO n 1 118 SER n 1 119 SER n 1 120 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene PHF3 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051216-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PHF3_HUMAN _struct_ref.pdbx_db_accession Q92576 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 923 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DME _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q92576 _struct_ref_seq.db_align_beg 923 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1029 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DME GLY A 1 ? UNP Q92576 ? ? 'cloning artifact' 1 1 1 2DME SER A 2 ? UNP Q92576 ? ? 'cloning artifact' 2 2 1 2DME SER A 3 ? UNP Q92576 ? ? 'cloning artifact' 3 3 1 2DME GLY A 4 ? UNP Q92576 ? ? 'cloning artifact' 4 4 1 2DME SER A 5 ? UNP Q92576 ? ? 'cloning artifact' 5 5 1 2DME SER A 6 ? UNP Q92576 ? ? 'cloning artifact' 6 6 1 2DME GLY A 7 ? UNP Q92576 ? ? 'cloning artifact' 7 7 1 2DME SER A 115 ? UNP Q92576 ? ? 'cloning artifact' 115 8 1 2DME GLY A 116 ? UNP Q92576 ? ? 'cloning artifact' 116 9 1 2DME PRO A 117 ? UNP Q92576 ? ? 'cloning artifact' 117 10 1 2DME SER A 118 ? UNP Q92576 ? ? 'cloning artifact' 118 11 1 2DME SER A 119 ? UNP Q92576 ? ? 'cloning artifact' 119 12 1 2DME GLY A 120 ? UNP Q92576 ? ? 'cloning artifact' 120 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 296 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.20mM TFSII_M domain U-15N, 13C; 20mM d-Tris HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DME _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DME _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DME _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9736 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DME _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DME _struct.title 'Solution structure of the TFIIS domain II of human PHD finger protein 3' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DME _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text ;PHF3, TFS2M, Glioblastoma multiforme, brain tumor, structural genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 8 ? THR A 29 ? SER A 8 THR A 29 1 ? 22 HELX_P HELX_P2 2 PRO A 36 ? ARG A 56 ? PRO A 36 ARG A 56 1 ? 21 HELX_P HELX_P3 3 ASP A 59 ? MET A 70 ? ASP A 59 MET A 70 1 ? 12 HELX_P HELX_P4 4 MET A 70 ? ASP A 75 ? MET A 70 ASP A 75 1 ? 6 HELX_P HELX_P5 5 ILE A 80 ? GLY A 88 ? ILE A 80 GLY A 88 1 ? 9 HELX_P HELX_P6 6 ASP A 93 ? MET A 98 ? ASP A 93 MET A 98 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DME _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DME _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 ARG 13 13 13 ARG ARG A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 SER 15 15 15 SER SER A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 PRO 36 36 36 PRO PRO A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 LYS 39 39 39 LYS LYS A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 PHE 52 52 52 PHE PHE A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 PHE 55 55 55 PHE PHE A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 TYR 62 62 62 TYR TYR A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 MET 70 70 70 MET MET A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ASN 78 78 78 ASN ASN A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 LYS 83 83 83 LYS LYS A . n A 1 84 LYS 84 84 84 LYS LYS A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 VAL 90 90 90 VAL VAL A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 ASP 93 93 93 ASP ASP A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 PRO 100 100 100 PRO PRO A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ARG 113 113 113 ARG ARG A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 SER 118 118 118 SER SER A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLY 120 120 120 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 32 ? ? 45.20 26.56 2 1 LYS A 34 ? ? -84.44 37.89 3 1 THR A 58 ? ? -110.23 55.46 4 1 LEU A 108 ? ? -103.46 -72.15 5 1 ARG A 112 ? ? -174.98 133.81 6 1 ARG A 113 ? ? -91.72 55.03 7 2 SER A 8 ? ? -160.87 115.42 8 2 ARG A 17 ? ? -47.98 -70.50 9 2 ASN A 32 ? ? -88.26 45.24 10 2 PHE A 71 ? ? -39.26 -38.02 11 2 ASN A 78 ? ? -68.53 84.11 12 2 GLU A 89 ? ? -36.08 -37.07 13 2 LYS A 106 ? ? -116.56 52.68 14 2 ARG A 113 ? ? -36.09 134.12 15 3 SER A 6 ? ? -58.35 94.32 16 3 ILE A 12 ? ? -63.56 -73.84 17 3 ASN A 32 ? ? -88.71 40.80 18 3 ASP A 57 ? ? -173.38 142.95 19 3 THR A 58 ? ? -93.48 55.31 20 3 SER A 105 ? ? -35.14 146.60 21 4 ARG A 17 ? ? -46.63 -71.05 22 4 PHE A 52 ? ? -39.92 -30.06 23 4 ASP A 57 ? ? -172.57 149.77 24 4 THR A 58 ? ? -100.62 54.90 25 4 GLU A 107 ? ? -41.88 157.86 26 4 PRO A 117 ? ? -69.75 1.91 27 5 ASN A 32 ? ? -85.77 38.43 28 5 ARG A 56 ? ? 38.07 32.25 29 5 ASP A 57 ? ? -174.60 141.56 30 5 THR A 58 ? ? -94.34 59.11 31 5 ASP A 75 ? ? -38.31 134.53 32 5 ILE A 80 ? ? -129.65 -50.19 33 5 PHE A 82 ? ? -39.79 -39.15 34 5 PRO A 117 ? ? -69.84 90.73 35 6 SER A 8 ? ? -65.90 94.79 36 6 ILE A 12 ? ? -63.11 -70.35 37 6 SER A 31 ? ? -68.72 -179.10 38 6 ASN A 32 ? ? -83.94 41.95 39 6 LYS A 49 ? ? -38.65 -32.69 40 6 THR A 58 ? ? -103.47 45.39 41 6 ASP A 75 ? ? -39.40 134.92 42 6 MET A 98 ? ? -58.85 171.05 43 6 SER A 105 ? ? -41.41 108.83 44 6 ALA A 109 ? ? -86.82 32.14 45 6 ARG A 112 ? ? -52.37 171.84 46 6 ARG A 113 ? ? -82.87 46.28 47 6 SER A 118 ? ? -174.11 106.06 48 7 SER A 8 ? ? 72.76 35.63 49 7 ASN A 32 ? ? -86.21 49.79 50 7 LEU A 33 ? ? -94.77 -65.02 51 7 LYS A 34 ? ? 70.70 42.26 52 7 LYS A 49 ? ? -37.41 -38.05 53 7 ASP A 57 ? ? -173.84 146.50 54 7 THR A 58 ? ? -100.80 57.07 55 7 ILE A 80 ? ? -131.04 -57.90 56 7 SER A 105 ? ? -36.26 143.37 57 7 ARG A 112 ? ? -69.62 -177.71 58 7 SER A 118 ? ? -51.37 109.04 59 8 SER A 5 ? ? -38.67 127.02 60 8 SER A 31 ? ? -66.55 -179.18 61 8 ASN A 32 ? ? -91.51 47.25 62 8 LYS A 49 ? ? -34.60 -37.58 63 8 ARG A 56 ? ? 43.83 29.62 64 8 ASN A 79 ? ? -103.03 51.79 65 8 ILE A 80 ? ? -134.98 -51.72 66 8 PHE A 82 ? ? -38.53 -29.00 67 8 LYS A 83 ? ? -92.55 -63.35 68 8 ARG A 112 ? ? -34.88 -37.67 69 8 PRO A 117 ? ? -69.80 98.32 70 9 SER A 3 ? ? -43.96 107.38 71 9 SER A 6 ? ? 36.91 41.44 72 9 SER A 31 ? ? -60.23 -178.48 73 9 ASN A 32 ? ? -92.34 49.12 74 9 ARG A 56 ? ? 74.70 33.90 75 9 ASN A 78 ? ? -110.36 79.82 76 9 ASN A 79 ? ? -98.91 47.48 77 9 GLU A 89 ? ? -39.49 -34.35 78 9 ILE A 96 ? ? -72.74 -70.81 79 9 ARG A 97 ? ? -39.72 -33.59 80 9 SER A 105 ? ? -35.08 130.07 81 9 GLU A 107 ? ? -34.51 106.01 82 9 ALA A 109 ? ? -34.68 -38.58 83 9 TRP A 111 ? ? -46.53 150.20 84 9 ARG A 113 ? ? -60.80 96.71 85 10 ARG A 17 ? ? -56.25 -71.14 86 10 ASN A 32 ? ? -79.38 49.60 87 10 LYS A 49 ? ? -35.26 -39.60 88 10 ASP A 75 ? ? -39.09 125.94 89 10 ILE A 80 ? ? -128.51 -54.44 90 10 LYS A 84 ? ? -34.33 -38.92 91 10 PRO A 100 ? ? -69.71 2.43 92 10 SER A 105 ? ? -39.48 135.80 93 11 SER A 2 ? ? -173.82 141.15 94 11 SER A 31 ? ? -53.76 -177.90 95 11 ASN A 32 ? ? -89.32 45.22 96 11 LYS A 49 ? ? -38.88 -29.41 97 11 ASN A 79 ? ? -101.63 42.83 98 11 ILE A 80 ? ? -129.67 -57.38 99 11 LEU A 103 ? ? -39.53 -30.21 100 12 ASN A 32 ? ? -95.17 48.59 101 12 LYS A 49 ? ? -36.22 -37.55 102 12 THR A 58 ? ? -119.71 60.52 103 12 ASN A 79 ? ? -106.65 57.36 104 12 ILE A 80 ? ? -132.06 -58.74 105 12 PHE A 82 ? ? -38.54 -33.30 106 12 LYS A 106 ? ? -93.26 59.93 107 12 ALA A 109 ? ? -39.13 -31.67 108 12 TRP A 111 ? ? -49.02 155.62 109 12 ARG A 114 ? ? -57.35 105.70 110 12 SER A 118 ? ? -34.55 118.83 111 13 ASN A 32 ? ? -82.92 41.97 112 13 THR A 58 ? ? -104.74 58.65 113 13 ASP A 75 ? ? -35.00 116.42 114 13 PHE A 82 ? ? -39.12 -39.17 115 13 MET A 98 ? ? -55.07 172.66 116 13 SER A 105 ? ? -36.80 138.59 117 13 ALA A 109 ? ? -39.94 -36.03 118 13 PRO A 117 ? ? -69.76 93.28 119 14 SER A 2 ? ? -68.99 82.98 120 14 SER A 8 ? ? -174.93 149.87 121 14 ASP A 59 ? ? -62.81 -175.93 122 14 ASN A 79 ? ? -96.94 44.83 123 14 ILE A 80 ? ? -127.27 -55.34 124 14 LEU A 108 ? ? 48.39 28.39 125 14 SER A 115 ? ? -52.66 88.45 126 15 SER A 31 ? ? -67.04 -178.92 127 15 ASN A 32 ? ? -85.61 31.72 128 15 ILE A 80 ? ? -125.21 -60.18 129 15 LYS A 84 ? ? -34.37 -38.95 130 15 LEU A 95 ? ? -39.77 -26.08 131 15 LYS A 106 ? ? -114.59 51.20 132 16 ARG A 17 ? ? -48.84 -70.69 133 16 ASN A 32 ? ? -94.36 30.13 134 16 THR A 58 ? ? -112.42 50.45 135 16 SER A 105 ? ? -34.76 98.53 136 16 ALA A 109 ? ? -39.38 -25.93 137 16 PRO A 117 ? ? -69.77 87.85 138 16 SER A 119 ? ? 70.44 42.09 139 17 SER A 5 ? ? -103.58 45.01 140 17 ASN A 32 ? ? -81.40 46.47 141 17 LEU A 33 ? ? -105.85 -65.94 142 17 GLU A 37 ? ? -38.07 -37.13 143 17 THR A 58 ? ? -111.15 56.54 144 17 LYS A 77 ? ? -38.51 -28.12 145 17 ILE A 80 ? ? -130.82 -56.98 146 17 LEU A 95 ? ? -36.83 -35.00 147 17 SER A 105 ? ? -40.06 108.81 148 17 GLU A 107 ? ? -35.04 140.99 149 17 ARG A 113 ? ? 72.64 33.57 150 17 ARG A 114 ? ? -37.32 153.21 151 17 SER A 115 ? ? -49.05 151.12 152 17 PRO A 117 ? ? -69.85 90.49 153 18 SER A 2 ? ? -63.54 91.77 154 18 SER A 8 ? ? -118.69 51.80 155 18 ALA A 9 ? ? -133.19 -41.90 156 18 ASN A 32 ? ? 39.34 26.89 157 18 LYS A 34 ? ? -86.66 38.28 158 18 LYS A 49 ? ? -36.79 -35.20 159 18 ARG A 56 ? ? 72.12 30.55 160 18 ASP A 57 ? ? -171.12 148.73 161 18 THR A 58 ? ? -99.81 57.55 162 18 ASP A 75 ? ? -36.87 119.70 163 18 ILE A 80 ? ? -132.20 -58.54 164 18 SER A 105 ? ? -36.45 134.04 165 18 LYS A 106 ? ? -100.11 60.18 166 18 TRP A 111 ? ? -35.80 141.20 167 19 ASN A 32 ? ? -84.98 38.42 168 19 LYS A 34 ? ? -103.08 50.02 169 19 ASP A 57 ? ? -174.19 132.83 170 19 MET A 98 ? ? -49.28 154.53 171 19 SER A 105 ? ? -39.41 150.12 172 19 GLU A 107 ? ? -35.23 134.71 173 19 TRP A 111 ? ? -49.74 153.49 174 19 ARG A 113 ? ? -59.08 109.57 175 20 SER A 31 ? ? -56.66 -177.61 176 20 ASN A 32 ? ? -98.64 59.18 177 20 ILE A 47 ? ? -37.24 -74.42 178 20 LYS A 49 ? ? -34.70 -34.52 179 20 ASP A 57 ? ? -171.07 118.65 180 20 ASP A 75 ? ? -36.98 120.28 181 20 ASN A 78 ? ? -89.32 -75.06 182 20 PRO A 100 ? ? -69.73 0.86 183 20 SER A 105 ? ? -34.47 143.67 184 20 LYS A 106 ? ? -110.86 57.44 185 20 ARG A 112 ? ? -87.68 49.77 186 20 PRO A 117 ? ? -69.70 98.05 #