HEADER METAL BINDING PROTEIN 21-APR-06 2DME TITLE SOLUTION STRUCTURE OF THE TFIIS DOMAIN II OF HUMAN PHD FINGER PROTEIN TITLE 2 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TFSII_M DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF3; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P051216-05; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PHF3, TFS2M, GLIOBLASTOMA MULTIFORME, BRAIN TUMOR, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.YONEYAMA,N.TOCHIO,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DME 1 REMARK REVDAT 3 09-MAR-22 2DME 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DME 1 VERSN REVDAT 1 21-OCT-06 2DME 0 JRNL AUTH M.YONEYAMA,N.TOCHIO,S.KOSHIBA,S.WATABE,T.HARADA,T.KIGAWA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE TFIIS DOMAIN II OF HUMAN PHD JRNL TITL 2 FINGER PROTEIN 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DME COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025585. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.20MM TFSII_M DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9736, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 32 26.56 45.20 REMARK 500 1 LYS A 34 37.89 -84.44 REMARK 500 1 THR A 58 55.46 -110.23 REMARK 500 1 LEU A 108 -72.15 -103.46 REMARK 500 1 ARG A 112 133.81 -174.98 REMARK 500 1 ARG A 113 55.03 -91.72 REMARK 500 2 SER A 8 115.42 -160.87 REMARK 500 2 ARG A 17 -70.50 -47.98 REMARK 500 2 ASN A 32 45.24 -88.26 REMARK 500 2 PHE A 71 -38.02 -39.26 REMARK 500 2 ASN A 78 84.11 -68.53 REMARK 500 2 GLU A 89 -37.07 -36.08 REMARK 500 2 LYS A 106 52.68 -116.56 REMARK 500 2 ARG A 113 134.12 -36.09 REMARK 500 3 SER A 6 94.32 -58.35 REMARK 500 3 ILE A 12 -73.84 -63.56 REMARK 500 3 ASN A 32 40.80 -88.71 REMARK 500 3 ASP A 57 142.95 -173.38 REMARK 500 3 THR A 58 55.31 -93.48 REMARK 500 3 SER A 105 146.60 -35.14 REMARK 500 4 ARG A 17 -71.05 -46.63 REMARK 500 4 PHE A 52 -30.06 -39.92 REMARK 500 4 ASP A 57 149.77 -172.57 REMARK 500 4 THR A 58 54.90 -100.62 REMARK 500 4 GLU A 107 157.86 -41.88 REMARK 500 4 PRO A 117 1.91 -69.75 REMARK 500 5 ASN A 32 38.43 -85.77 REMARK 500 5 ARG A 56 32.25 38.07 REMARK 500 5 ASP A 57 141.56 -174.60 REMARK 500 5 THR A 58 59.11 -94.34 REMARK 500 5 ASP A 75 134.53 -38.31 REMARK 500 5 ILE A 80 -50.19 -129.65 REMARK 500 5 PHE A 82 -39.15 -39.79 REMARK 500 5 PRO A 117 90.73 -69.84 REMARK 500 6 SER A 8 94.79 -65.90 REMARK 500 6 ILE A 12 -70.35 -63.11 REMARK 500 6 SER A 31 -179.10 -68.72 REMARK 500 6 ASN A 32 41.95 -83.94 REMARK 500 6 LYS A 49 -32.69 -38.65 REMARK 500 6 THR A 58 45.39 -103.47 REMARK 500 6 ASP A 75 134.92 -39.40 REMARK 500 6 MET A 98 171.05 -58.85 REMARK 500 6 SER A 105 108.83 -41.41 REMARK 500 6 ALA A 109 32.14 -86.82 REMARK 500 6 ARG A 112 171.84 -52.37 REMARK 500 6 ARG A 113 46.28 -82.87 REMARK 500 6 SER A 118 106.06 -174.11 REMARK 500 7 SER A 8 35.63 72.76 REMARK 500 7 ASN A 32 49.79 -86.21 REMARK 500 7 LEU A 33 -65.02 -94.77 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002200238.1 RELATED DB: TARGETDB DBREF 2DME A 8 114 UNP Q92576 PHF3_HUMAN 923 1029 SEQADV 2DME GLY A 1 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 2 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 3 UNP Q92576 CLONING ARTIFACT SEQADV 2DME GLY A 4 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 5 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 6 UNP Q92576 CLONING ARTIFACT SEQADV 2DME GLY A 7 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 115 UNP Q92576 CLONING ARTIFACT SEQADV 2DME GLY A 116 UNP Q92576 CLONING ARTIFACT SEQADV 2DME PRO A 117 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 118 UNP Q92576 CLONING ARTIFACT SEQADV 2DME SER A 119 UNP Q92576 CLONING ARTIFACT SEQADV 2DME GLY A 120 UNP Q92576 CLONING ARTIFACT SEQRES 1 A 120 GLY SER SER GLY SER SER GLY SER ALA ASP GLN ILE ARG SEQRES 2 A 120 GLN SER VAL ARG HIS SER LEU LYS ASP ILE LEU MET LYS SEQRES 3 A 120 ARG LEU THR ASP SER ASN LEU LYS VAL PRO GLU GLU LYS SEQRES 4 A 120 ALA ALA LYS VAL ALA THR LYS ILE GLU LYS GLU LEU PHE SEQRES 5 A 120 SER PHE PHE ARG ASP THR ASP ALA LYS TYR LYS ASN LYS SEQRES 6 A 120 TYR ARG SER LEU MET PHE ASN LEU LYS ASP PRO LYS ASN SEQRES 7 A 120 ASN ILE LEU PHE LYS LYS VAL LEU LYS GLY GLU VAL THR SEQRES 8 A 120 PRO ASP HIS LEU ILE ARG MET SER PRO GLU GLU LEU ALA SEQRES 9 A 120 SER LYS GLU LEU ALA ALA TRP ARG ARG ARG SER GLY PRO SEQRES 10 A 120 SER SER GLY HELIX 1 1 SER A 8 THR A 29 1 22 HELIX 2 2 PRO A 36 ARG A 56 1 21 HELIX 3 3 ASP A 59 MET A 70 1 12 HELIX 4 4 MET A 70 ASP A 75 1 6 HELIX 5 5 ILE A 80 GLY A 88 1 9 HELIX 6 6 ASP A 93 MET A 98 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1