HEADER LIPID BINDING PROTEIN 21-APR-06 2DMH TITLE SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN OF HUMAN MYOFERLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOFERLIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN; COMPND 5 SYNONYM: FER-1-LIKE PROTEIN 3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FER1L3, KIAA1207, MYOF; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050627-29; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BETA-SANDWICH, FER-1-LIKE PROTEIN 3, MUSCULAR DYSTROPHY, KEYWDS 2 CARDIOMYOPATHY, MEMBRANE FUSION, DYSTROPHIN, STRUCTURAL GENOMICS, KEYWDS 3 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 4 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, KEYWDS 5 LIPID BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DMH 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DMH 1 VERSN REVDAT 1 21-OCT-06 2DMH 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST C2 DOMAIN OF HUMAN MYOFERLIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DMH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025588. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18MM UNIFORMLY 13C AND 15N REMARK 210 LABELED PROTEIN; 20MM TRISHCL, REMARK 210 100MM NACL, 1MM DTT, 0.02% NAN3, REMARK 210 10% D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9318, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -74.65 -69.66 REMARK 500 1 LYS A 21 -179.71 -54.13 REMARK 500 1 ASN A 47 93.36 -38.49 REMARK 500 1 PRO A 65 -175.52 -69.77 REMARK 500 1 GLU A 80 -28.93 -38.70 REMARK 500 1 ILE A 82 -63.73 -107.71 REMARK 500 1 GLN A 84 157.24 -39.79 REMARK 500 1 ASN A 85 32.36 -87.40 REMARK 500 1 ALA A 91 136.07 -174.51 REMARK 500 1 THR A 99 159.17 -49.43 REMARK 500 1 SER A 103 138.59 -34.46 REMARK 500 1 ASP A 120 106.98 -49.38 REMARK 500 2 SER A 5 91.21 -68.50 REMARK 500 2 GLU A 14 -73.08 -51.90 REMARK 500 2 LYS A 21 174.39 -56.80 REMARK 500 2 ASP A 46 173.88 -50.20 REMARK 500 2 ASN A 47 99.30 -34.50 REMARK 500 2 ASN A 85 45.90 -89.51 REMARK 500 2 THR A 99 151.77 -40.13 REMARK 500 2 ASN A 115 -175.24 -68.86 REMARK 500 2 ASP A 120 119.60 -39.68 REMARK 500 3 SER A 5 105.83 -56.66 REMARK 500 3 SER A 6 44.26 -104.68 REMARK 500 3 GLU A 14 -75.07 -64.84 REMARK 500 3 LYS A 21 179.50 -53.49 REMARK 500 3 PRO A 27 -178.96 -69.81 REMARK 500 3 ASP A 46 170.61 -54.30 REMARK 500 3 ASN A 47 100.64 -34.45 REMARK 500 3 ASN A 85 43.12 -81.80 REMARK 500 3 ASN A 115 -178.95 -69.02 REMARK 500 4 SER A 6 44.75 -86.06 REMARK 500 4 GLU A 14 -75.21 -59.62 REMARK 500 4 PHE A 24 31.69 -88.95 REMARK 500 4 PRO A 27 -173.09 -69.76 REMARK 500 4 LYS A 44 156.11 -49.74 REMARK 500 4 ASP A 46 175.51 -54.68 REMARK 500 4 ASN A 47 98.33 -37.45 REMARK 500 4 PHE A 79 -36.02 -36.07 REMARK 500 4 ILE A 82 -67.13 -128.26 REMARK 500 4 GLN A 84 179.64 -52.24 REMARK 500 4 GLN A 102 137.51 -173.57 REMARK 500 4 SER A 103 123.55 -34.27 REMARK 500 4 SER A 138 106.55 -45.52 REMARK 500 5 SER A 6 39.63 35.14 REMARK 500 5 GLU A 14 -74.90 -60.86 REMARK 500 5 LYS A 21 -179.47 -54.73 REMARK 500 5 PRO A 27 -178.74 -69.77 REMARK 500 5 ASP A 46 174.32 -55.29 REMARK 500 5 ASN A 47 100.08 -34.64 REMARK 500 5 SER A 70 151.44 -42.22 REMARK 500 REMARK 500 THIS ENTRY HAS 207 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101181.1 RELATED DB: TARGETDB DBREF 2DMH A 8 134 UNP Q9NZM1 MYOF_HUMAN 1 127 SEQADV 2DMH GLY A 1 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 2 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 3 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH GLY A 4 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 5 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 6 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH GLY A 7 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 135 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH GLY A 136 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH PRO A 137 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 138 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH SER A 139 UNP Q9NZM1 CLONING ARTIFACT SEQADV 2DMH GLY A 140 UNP Q9NZM1 CLONING ARTIFACT SEQRES 1 A 140 GLY SER SER GLY SER SER GLY MET LEU ARG VAL ILE VAL SEQRES 2 A 140 GLU SER ALA SER ASN ILE PRO LYS THR LYS PHE GLY LYS SEQRES 3 A 140 PRO ASP PRO ILE VAL SER VAL ILE PHE LYS ASP GLU LYS SEQRES 4 A 140 LYS LYS THR LYS LYS VAL ASP ASN GLU LEU ASN PRO VAL SEQRES 5 A 140 TRP ASN GLU ILE LEU GLU PHE ASP LEU ARG GLY ILE PRO SEQRES 6 A 140 LEU ASP PHE SER SER SER LEU GLY ILE ILE VAL LYS ASP SEQRES 7 A 140 PHE GLU THR ILE GLY GLN ASN LYS LEU ILE GLY THR ALA SEQRES 8 A 140 THR VAL ALA LEU LYS ASP LEU THR GLY ASP GLN SER ARG SEQRES 9 A 140 SER LEU PRO TYR LYS LEU ILE SER LEU LEU ASN GLU LYS SEQRES 10 A 140 GLY GLN ASP THR GLY ALA THR ILE ASP LEU VAL ILE GLY SEQRES 11 A 140 TYR ASP PRO PRO SER GLY PRO SER SER GLY HELIX 1 1 LYS A 96 LEU A 98 5 3 SHEET 1 A 4 VAL A 52 ASP A 60 0 SHEET 2 A 4 MET A 8 SER A 17 -1 N GLU A 14 O ASN A 54 SHEET 3 A 4 ASP A 120 TYR A 131 -1 O THR A 124 N SER A 17 SHEET 4 A 4 ARG A 104 LEU A 114 -1 N LEU A 113 O THR A 121 SHEET 1 B 4 LYS A 39 LYS A 41 0 SHEET 2 B 4 PRO A 29 ILE A 34 -1 N VAL A 33 O LYS A 40 SHEET 3 B 4 SER A 71 ASP A 78 -1 O ILE A 75 N SER A 32 SHEET 4 B 4 GLY A 89 ALA A 94 -1 O GLY A 89 N VAL A 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1