HEADER TRANSCRIPTION 21-APR-06 2DMI TITLE SOLUTION STRUCTURE OF THE FIRST AND THE SECOND ZF-C2H2 LIKE DOMAINS OF TITLE 2 HUMAN TEASHIRT HOMOLOG 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TEASHIRT HOMOLOG 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2; COMPND 5 SYNONYM: ZINC FINGER PROTEIN 537; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZNF537; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050905-02; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS ZINC FINGER PROTEIN 537, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ENDO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DMI 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2DMI 1 VERSN REVDAT 1 21-OCT-06 2DMI 0 JRNL AUTH H.ENDO,F.HAYASHI,M.YOSHIDA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE FIRST AND THE SECOND ZF-C2H2 LIKE JRNL TITL 2 DOMAINS OF HUMAN TEASHIRT HOMOLOG 3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DMI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025589. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM; 20MM NAD-MAL(6.0),100MM REMARK 210 NACL,0.1MM DTT,0.02%NAN3,0.05MM REMARK 210 ZNCL2,1MM NTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 108.88 -170.35 REMARK 500 1 ASP A 24 -73.19 -43.95 REMARK 500 1 SER A 26 40.30 -102.25 REMARK 500 1 HIS A 44 174.68 -47.37 REMARK 500 1 ARG A 46 176.13 -58.69 REMARK 500 1 ASP A 48 147.15 -34.63 REMARK 500 1 ASN A 49 148.28 -38.91 REMARK 500 1 GLU A 51 68.72 -106.06 REMARK 500 1 SER A 61 -177.21 -57.02 REMARK 500 1 LEU A 68 70.65 -118.97 REMARK 500 1 LEU A 69 178.11 -49.65 REMARK 500 1 PRO A 112 -178.59 -69.74 REMARK 500 2 SER A 5 49.81 38.13 REMARK 500 2 SER A 6 104.23 -53.47 REMARK 500 2 SER A 12 130.65 -174.56 REMARK 500 2 THR A 15 49.08 31.60 REMARK 500 2 SER A 26 47.40 -107.97 REMARK 500 2 HIS A 44 159.58 -43.74 REMARK 500 2 ARG A 46 158.21 -49.06 REMARK 500 2 LYS A 58 89.88 -66.64 REMARK 500 2 ARG A 59 39.91 -88.15 REMARK 500 2 TRP A 60 94.34 -61.61 REMARK 500 2 PRO A 63 -178.68 -69.75 REMARK 500 2 MET A 71 176.39 -53.61 REMARK 500 2 GLU A 72 132.36 -38.52 REMARK 500 2 LEU A 81 126.72 -38.70 REMARK 500 2 SER A 110 179.27 -53.64 REMARK 500 3 SER A 5 112.20 -173.59 REMARK 500 3 ILE A 13 42.07 -91.57 REMARK 500 3 SER A 26 36.09 -84.46 REMARK 500 3 VAL A 37 -33.11 -36.82 REMARK 500 3 ARG A 46 175.31 -50.97 REMARK 500 3 LYS A 58 46.02 -90.69 REMARK 500 3 PRO A 63 -179.22 -69.73 REMARK 500 3 ASP A 76 105.80 -40.73 REMARK 500 3 TYR A 85 -72.40 -52.54 REMARK 500 3 SER A 114 -51.84 -124.51 REMARK 500 4 SER A 12 43.44 -85.22 REMARK 500 4 ILE A 13 135.93 -39.65 REMARK 500 4 LYS A 23 -32.77 -33.87 REMARK 500 4 ASP A 24 -70.99 -72.21 REMARK 500 4 SER A 26 42.65 -78.35 REMARK 500 4 HIS A 44 163.56 -45.78 REMARK 500 4 ASP A 47 38.80 -91.67 REMARK 500 4 ASN A 49 106.39 -48.90 REMARK 500 4 ARG A 64 129.56 -173.36 REMARK 500 4 ARG A 66 114.79 -175.12 REMARK 500 4 SER A 67 130.76 -172.45 REMARK 500 4 LYS A 74 39.95 -82.22 REMARK 500 4 ASP A 76 39.51 -82.27 REMARK 500 REMARK 500 THIS ENTRY HAS 335 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 CYS A 25 SG 106.8 REMARK 620 3 HIS A 38 NE2 110.1 111.7 REMARK 620 4 HIS A 44 ND1 110.1 111.7 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 83 SG REMARK 620 2 CYS A 86 SG 107.7 REMARK 620 3 HIS A 99 NE2 106.0 110.0 REMARK 620 4 HIS A 105 ND1 111.4 116.5 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002001446.1 RELATED DB: TARGETDB DBREF 2DMI A 8 109 UNP Q63HK5 TSH3_HUMAN 200 303 SEQADV 2DMI GLY A 1 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 2 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 3 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI GLY A 4 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 5 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 6 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI GLY A 7 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 110 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI GLY A 111 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI PRO A 112 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 113 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI SER A 114 UNP Q63HK5 CLONING ARTIFACT SEQADV 2DMI GLY A 115 UNP Q63HK5 CLONING ARTIFACT SEQRES 1 A 115 GLY SER SER GLY SER SER GLY LYS LEU TYR GLY SER ILE SEQRES 2 A 115 PHE THR GLY ALA SER LYS PHE ARG CYS LYS ASP CYS SER SEQRES 3 A 115 ALA ALA TYR ASP THR LEU VAL GLU LEU THR VAL HIS MET SEQRES 4 A 115 ASN GLU THR GLY HIS TYR ARG ASP ASP ASN HIS GLU THR SEQRES 5 A 115 ASP ASN ASN ASN PRO LYS ARG TRP SER LYS PRO ARG LYS SEQRES 6 A 115 ARG SER LEU LEU GLU MET GLU GLY LYS GLU ASP ALA GLN SEQRES 7 A 115 LYS VAL LEU LYS CYS MET TYR CYS GLY HIS SER PHE GLU SEQRES 8 A 115 SER LEU GLN ASP LEU SER VAL HIS MET ILE LYS THR LYS SEQRES 9 A 115 HIS TYR GLN LYS VAL SER GLY PRO SER SER GLY HET ZN A 200 1 HET ZN A 300 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 THR A 31 THR A 42 1 12 HELIX 2 2 SER A 92 THR A 103 1 12 SHEET 1 A 2 PHE A 20 ARG A 21 0 SHEET 2 A 2 ALA A 28 TYR A 29 -1 O TYR A 29 N PHE A 20 LINK SG CYS A 22 ZN ZN A 200 1555 1555 2.29 LINK SG CYS A 25 ZN ZN A 200 1555 1555 2.25 LINK NE2 HIS A 38 ZN ZN A 200 1555 1555 1.97 LINK ND1 HIS A 44 ZN ZN A 200 1555 1555 1.97 LINK SG CYS A 83 ZN ZN A 300 1555 1555 2.31 LINK SG CYS A 86 ZN ZN A 300 1555 1555 2.21 LINK NE2 HIS A 99 ZN ZN A 300 1555 1555 2.06 LINK ND1 HIS A 105 ZN ZN A 300 1555 1555 1.93 SITE 1 AC1 4 CYS A 22 CYS A 25 HIS A 38 HIS A 44 SITE 1 AC2 4 CYS A 83 CYS A 86 HIS A 99 HIS A 105 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1