HEADER PROTEIN BINDING 22-APR-06 2DMK TITLE THE SOLUTION STRUCTURE OF THE FN3 DOMAIN OF HUMAN MIDLINE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MIDLINE 2 ISOFORM 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FN3 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MID2; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050302-86; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS MIDLINE DEFECT 2, TRIPARTITE MOTIF PROTEIN 1, MIDIN-2, RING FINGER KEYWDS 2 PROTEIN 60, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DMK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DMK 1 VERSN REVDAT 1 22-OCT-06 2DMK 0 JRNL AUTH N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL THE SOLUTION STRUCTURE OF THE FN3 DOMAIN OF HUMAN MIDLINE 2 JRNL TITL 2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DMK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025591. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM FN3 DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL; 100MM NACL; 1MM REMARK 210 D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMNMRVIEW REMARK 210 5.0.4, KUJIRA 0.955, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 -55.31 -125.19 REMARK 500 1 LEU A 10 94.89 -64.65 REMARK 500 1 THR A 14 -29.19 -36.70 REMARK 500 1 HIS A 30 -73.54 -34.66 REMARK 500 1 GLN A 58 153.79 -45.73 REMARK 500 1 ASP A 69 -33.58 -38.25 REMARK 500 1 TRP A 71 150.21 -40.36 REMARK 500 1 PRO A 75 -166.56 -69.81 REMARK 500 1 HIS A 81 118.37 -167.85 REMARK 500 1 ALA A 103 -72.59 -74.10 REMARK 500 1 SER A 117 -75.47 -45.74 REMARK 500 1 PRO A 119 -177.02 -69.77 REMARK 500 1 PRO A 124 84.98 -69.78 REMARK 500 1 SER A 125 114.94 -174.96 REMARK 500 2 SER A 3 41.94 34.86 REMARK 500 2 ASP A 11 33.72 -86.94 REMARK 500 2 TYR A 12 161.08 -41.52 REMARK 500 2 THR A 14 -38.69 -30.28 REMARK 500 2 HIS A 30 -70.88 -35.59 REMARK 500 2 SER A 67 52.54 -114.24 REMARK 500 2 HIS A 81 120.79 -172.35 REMARK 500 2 SER A 117 -73.48 -33.96 REMARK 500 2 PRO A 119 -178.84 -69.81 REMARK 500 2 SER A 125 -50.54 -123.45 REMARK 500 3 THR A 56 54.47 -116.74 REMARK 500 3 ALA A 59 -178.40 -49.78 REMARK 500 3 ASN A 60 122.49 -32.22 REMARK 500 3 ILE A 62 -39.99 -33.19 REMARK 500 3 SER A 67 77.47 -108.39 REMARK 500 3 TRP A 71 137.45 -34.70 REMARK 500 3 PRO A 75 -177.24 -69.78 REMARK 500 3 SER A 117 -71.13 -36.21 REMARK 500 3 PRO A 119 -174.75 -69.75 REMARK 500 3 SER A 126 -179.91 -65.64 REMARK 500 4 SER A 5 47.55 -90.28 REMARK 500 4 HIS A 30 -71.55 -35.81 REMARK 500 4 VAL A 68 42.62 -81.61 REMARK 500 4 TRP A 71 143.84 -36.32 REMARK 500 4 PRO A 75 -174.13 -69.73 REMARK 500 4 HIS A 81 123.95 -171.60 REMARK 500 4 SER A 117 174.75 -53.19 REMARK 500 4 PRO A 119 -174.38 -69.74 REMARK 500 4 SER A 122 141.03 -175.03 REMARK 500 4 SER A 126 153.98 -47.81 REMARK 500 5 SER A 3 169.49 -45.18 REMARK 500 5 THR A 14 -25.78 -38.92 REMARK 500 5 PHE A 43 -32.49 -39.04 REMARK 500 5 THR A 56 50.76 -105.56 REMARK 500 5 SER A 67 56.93 -100.28 REMARK 500 5 TRP A 71 157.63 -46.52 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002011264.2 RELATED DB: TARGETDB DBREF 2DMK A 8 121 UNP Q9UJV3 TRIM1_HUMAN 374 517 SEQADV 2DMK GLY A 1 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 2 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 3 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK GLY A 4 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 5 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 6 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK GLY A 7 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 122 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK GLY A 123 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK PRO A 124 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 125 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK SER A 126 UNP Q9UJV3 CLONING ARTIFACT SEQADV 2DMK GLY A 127 UNP Q9UJV3 CLONING ARTIFACT SEQRES 1 A 127 GLY SER SER GLY SER SER GLY GLU GLY LEU ASP TYR LEU SEQRES 2 A 127 THR ALA PRO ASN PRO PRO SER ILE ARG GLU GLU LEU CYS SEQRES 3 A 127 THR ALA SER HIS ASP THR ILE THR VAL HIS TRP ILE SER SEQRES 4 A 127 ASP ASP GLU PHE SER ILE SER SER TYR GLU LEU GLN TYR SEQRES 5 A 127 THR ILE PHE THR GLY GLN ALA ASN PHE ILE SER LEU TYR SEQRES 6 A 127 ASN SER VAL ASP SER TRP MET ILE VAL PRO ASN ILE LYS SEQRES 7 A 127 GLN ASN HIS TYR THR VAL HIS GLY LEU GLN SER GLY THR SEQRES 8 A 127 ARG TYR ILE PHE ILE VAL LYS ALA ILE ASN GLN ALA GLY SEQRES 9 A 127 SER ARG ASN SER GLU PRO THR ARG LEU LYS THR ASN SER SEQRES 10 A 127 GLN PRO PHE LYS SER GLY PRO SER SER GLY HELIX 1 1 ASN A 60 SER A 67 1 8 HELIX 2 2 VAL A 68 TRP A 71 5 4 SHEET 1 A 3 SER A 20 SER A 29 0 SHEET 2 A 3 THR A 32 ILE A 38 -1 O ILE A 38 N SER A 20 SHEET 3 A 3 HIS A 81 HIS A 85 -1 O VAL A 84 N ILE A 33 SHEET 1 B 4 MET A 72 ILE A 77 0 SHEET 2 B 4 ILE A 45 PHE A 55 -1 N TYR A 48 O ILE A 77 SHEET 3 B 4 ARG A 92 ASN A 101 -1 O ILE A 96 N GLN A 51 SHEET 4 B 4 SER A 105 ASN A 107 -1 O ARG A 106 N ALA A 99 SHEET 1 C 4 MET A 72 ILE A 77 0 SHEET 2 C 4 ILE A 45 PHE A 55 -1 N TYR A 48 O ILE A 77 SHEET 3 C 4 ARG A 92 ASN A 101 -1 O ILE A 96 N GLN A 51 SHEET 4 C 4 THR A 111 LYS A 114 -1 O THR A 111 N PHE A 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1